Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032747.1

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Forward (+)

332 .. 1233

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032747.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggctgctctggctcacgccctgctcggaatcatcccagctcggtgtggtctctgccgagccatttaccccaacctctgctgctcttggcgcccttcacctaatccctccggattctccgtttccagtaggacccaccttgctaatctcaccgcccgctccagactcaacgccgcccacaccctcactgtccacaatgcctccgctcccaccactcttgaaatccccgtcacctgttaccagcttattggtgttcctgatcaagctgagaaagatgaggttattaaagcggttatggatttgaagaattctgaagttgaagagggttatact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

111

Amino Acids

11.93

Weight (kDa)

6.88

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	90
AccBSI	CCGCTC	2 cut(s)	159, 206
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	5 cut(s)	153, 157, 174, 204, 290
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	221, 304, 320
AluBI	AGCT	3 cut(s)	41, 244, 266
AluI	AGCT	3 cut(s)	41, 244, 266
Alw26I	GTCTC	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	5, 81
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	90, 142, 223
AvaII	GGWCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	94
BisI	GCNGC	3 cut(s)	6, 82, 174
BlsI	GCNGC	3 cut(s)	7, 83, 175
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	92, 134
BpmI	CTGGAG	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	91
BsaI	GGTCTC	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse1I	ACTGG	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	110
BseGI	GGATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	56
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	5 cut(s)	153, 157, 174, 204, 290
BspCNI	CTCAG	1 cut(s)	259
BspEI	TCCGGA	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	92, 134
BspT107I	GGYRCC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	56
BsrBI	CCGCTC	2 cut(s)	159, 206
BsrI	ACTGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 90
BstV1I	GCAGC	1 cut(s)	68
BstXI	CCANNNNNNTGG	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviJI	RGCY	6 cut(s)	5, 14, 41, 62, 244, 266
CviKI_1	RGCY	6 cut(s)	5, 14, 41, 62, 244, 266
DdeI	CTNAG	1 cut(s)	267
DinI	GGCGCC	1 cut(s)	92
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	307
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
FaiI	YATR	2 cut(s)	296, 330
FauI	CCCGC	1 cut(s)	164
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	6, 82, 174
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	6, 82, 174
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	3 cut(s)	6, 82, 174
GsaI	CCCAGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	145
HaeII	RGCGCY	1 cut(s)	94
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	30, 114, 165
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	3 cut(s)	90, 142, 223
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	29, 313
Hpy188III	TCNNGA	4 cut(s)	111, 162, 218, 257
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 90
HpyF3I	CTNAG	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	91
HspAI	GCGC	1 cut(s)	91
KasI	GGCGCC	1 cut(s)	90
Kpn2I	TCCGGA	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	164, 211
LpnPI	CCDG	8 cut(s)	35, 51, 124, 139, 175, 247, 254, 270
Lsp1109I	GCAGC	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	229, 236
MalI	GATC	1 cut(s)	261
MbiI	CCGCTC	2 cut(s)	159, 206
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	316, 332
MluCI	AATT	1 cut(s)	307
Mly113I	GGCGCC	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	6 cut(s)	86, 118, 194, 211, 271, 316
MroI	TCCGGA	1 cut(s)	110
MseI	TTAA	1 cut(s)	285
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	11, 90
NarI	GGCGCC	1 cut(s)	91
NdeII	GATC	1 cut(s)	259
NlaIV	GGNNCC	2 cut(s)	92, 134
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	30, 114
PkrI	GCNGC	3 cut(s)	7, 83, 175
PleI	GAGTC	1 cut(s)	159
PluTI	GGCGCC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	92, 134
PspPI	GGNCC	1 cut(s)	132
PspPPI	RGGWCCY	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	3 cut(s)	6, 82, 174
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	159
SetI	ASST	8 cut(s)	43, 78, 103, 141, 236, 246, 268, 282
SfoI	GGCGCC	1 cut(s)	92
SinI	GGWCC	1 cut(s)	132
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	5 cut(s)	153, 157, 174, 204, 290
SspDI	GGCGCC	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	190
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	30, 114
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	2 cut(s)	5, 81
Tsp45I	GTSAC	1 cut(s)	229
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.