Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8304249.1

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 903

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8304249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 632 bp

attgacagagctaaaactttgtgtgagtgtctgattgcatcagagcttactgatctgaaactagaggaagctcttacgctgtttcttctcggtaaggataatgaggctgcagttgttgaaaagctgaagaagcttgatggaagcaaaaaccaattaatacagtctttatgcaaacaaggtgacctcaagctagctcaacaactttttcctcatgaacccaacccctcccaacagacctgtgagctcttaatcctttcttgcatccgccaggattctctctctgatgggttagacgtgcatagccaccttgttgatggcgggtgggaccaagacccttttttggccaccaaacttatagagatgtactctgagttggactccatcgagaatgcacgtgaagtattcgataaaactcgtaaaagaactatttatatgtggaatgcactttttagagcccttacgttggctggccatggaactgaggtgctaaatttgtacagacaaatgaatacaattggggtttcgtctgatcggtttacgtatacgtatgtactcaaagcttgtgttgtttcagagattttgagttcgcttctccagaagggaaaggagattcatgggcatattttgcgtca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

210

Amino Acids

23.71

Weight (kDa)

5.7

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	542
AciI	CCGC	2 cut(s)	265, 318
AcoI	YGGCCR	2 cut(s)	342, 469
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	146
AcvI	CACGTG	1 cut(s)	395
AfaI	GTAC	3 cut(s)	365, 497, 552
AfiI	CCNNNNNNNGG	2 cut(s)	340, 463
AgsI	TTSAA	1 cut(s)	119
AjiI	CACGTC	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	9 cut(s)	11, 46, 71, 124, 133, 190, 194, 244, 560
AluI	AGCT	9 cut(s)	11, 46, 71, 124, 133, 190, 194, 244, 560
Alw21I	GWGCWC	1 cut(s)	246
AoxI	GGCC	2 cut(s)	342, 469
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	490
AseI	ATTAAT	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	191
AsuNHI	GCTAGC	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	325
BalI	TGGCCA	2 cut(s)	344, 471
BanII	GRGCYC	2 cut(s)	246, 457
BbrPI	CACGTG	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	4 cut(s)	131, 278, 308, 389
BciT130I	CCWGG	1 cut(s)	269
BfaI	CTAG	2 cut(s)	62, 191
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	325
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	2 cut(s)	47, 270
BmtI	GCTAGC	1 cut(s)	194
BplI	GAGNNNNNCTC	4 cut(s)	350, 382, 362, 394
BpmI	CTGGAG	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	170
BsaAI	YACGTR	3 cut(s)	395, 540, 546
BsaJI	CCNNGG	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 463
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	472
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	340, 463
BseMII	CTCAG	2 cut(s)	360, 471
BseXI	GCAGC	1 cut(s)	94
BshFI	GGCC	2 cut(s)	344, 471
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	340, 463
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	2 cut(s)	394, 445
BsnI	GGCC	2 cut(s)	344, 471
Bsp1286I	GDGCHC	2 cut(s)	246, 457
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	52, 529
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	2 cut(s)	265, 318
BspANI	GGCC	2 cut(s)	344, 471
BspCNI	CTCAG	2 cut(s)	361, 472
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	326
BspMAI	CTGCAG	1 cut(s)	112
BspOI	GCTAGC	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	472
BssMI	GATC	2 cut(s)	52, 529
BssNAI	GTATAC	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	472
Bst1107I	GTATAC	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	625
BstAUI	TGTACA	1 cut(s)	495
BstBAI	YACGTR	3 cut(s)	395, 540, 546
BstC8I	GCNNGC	2 cut(s)	192, 469
BstDEI	CTNAG	2 cut(s)	369, 480
BstDSI	CCRYGG	1 cut(s)	472
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	55, 532
BstMBI	GATC	2 cut(s)	52, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 625
BstNI	CCWGG	1 cut(s)	269
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	108
BstSNI	TACGTA	2 cut(s)	540, 546
BstV1I	GCAGC	1 cut(s)	94
BstZ17I	GTATAC	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	344, 471
BtgI	CCRYGG	1 cut(s)	472
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	192, 469
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	3 cut(s)	364, 496, 551
CviAII	CATG	3 cut(s)	212, 473, 614
CviQI	GTAC	3 cut(s)	364, 496, 551
DdeI	CTNAG	2 cut(s)	369, 480
DpnI	GATC	2 cut(s)	54, 531
DpnII	GATC	2 cut(s)	52, 529
EaeI	YGGCCR	2 cut(s)	342, 469
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	244
Eco105I	TACGTA	2 cut(s)	540, 546
Eco130I	CCWWGG	1 cut(s)	472
Eco24I	GRGCYC	2 cut(s)	246, 457
Eco47I	GGWCC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	146
Eco72I	CACGTG	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	472
EcoT38I	GRGCYC	2 cut(s)	246, 457
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	3 cut(s)	215, 476, 617
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	3 cut(s)	211, 472, 613
FauI	CCCGC	1 cut(s)	311
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	2 cut(s)	246, 457
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	62, 191
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	2 cut(s)	344, 471
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	3 cut(s)	215, 476, 617
HindIII	AAGCTT	2 cut(s)	131, 558
HinfI	GANTC	3 cut(s)	272, 377, 610
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	537, 543
Hpy188I	TCNGA	7 cut(s)	33, 43, 57, 283, 370, 529, 574
Hpy188III	TCNNGA	3 cut(s)	212, 385, 595
Hpy8I	GTNNAC	2 cut(s)	537, 543
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	5 cut(s)	294, 394, 461, 539, 545
HpyCH4V	TGCA	7 cut(s)	38, 110, 171, 261, 298, 392, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 625
HpyF3I	CTNAG	2 cut(s)	369, 480
HpySE526I	ACGT	5 cut(s)	294, 394, 461, 539, 545
Hsp92II	CATG	3 cut(s)	215, 476, 617
Kzo9I	GATC	2 cut(s)	52, 529
LpnPI	CCDG	5 cut(s)	250, 254, 281, 453, 608
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	2 cut(s)	47, 270
MaeI	CTAG	2 cut(s)	62, 191
MaeII	ACGT	5 cut(s)	294, 394, 461, 539, 545
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	54, 531
MboI	GATC	2 cut(s)	52, 529
MboII	GAAGA	2 cut(s)	77, 139
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	246, 457
MlsI	TGGCCA	2 cut(s)	344, 471
MluCI	AATT	3 cut(s)	152, 490, 513
MluNI	TGGCCA	2 cut(s)	344, 471
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	6 cut(s)	58, 97, 194, 219, 235, 475
Mox20I	TGGCCA	2 cut(s)	344, 471
MscI	TGGCCA	2 cut(s)	344, 471
MseI	TTAA	2 cut(s)	155, 248
Msp20I	TGGCCA	2 cut(s)	344, 471
MspR9I	CCNGG	1 cut(s)	269
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	2 cut(s)	394, 445
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	130, 625
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	2 cut(s)	52, 529
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	3 cut(s)	215, 476, 617
NlaIV	GGNNCC	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	211
PctI	GAATGC	2 cut(s)	394, 445
PfeI	GAWTC	2 cut(s)	272, 610
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	371
PmaCI	CACGTG	1 cut(s)	395
PmlI	CACGTG	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	371
Ppu21I	YACGTR	3 cut(s)	395, 540, 546
PshBI	ATTAAT	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	267
PspCI	CACGTG	1 cut(s)	395
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	112
RsaI	GTAC	3 cut(s)	365, 497, 552
RsaNI	GTAC	3 cut(s)	364, 496, 551
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	155, 248
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	52, 529
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	2 cut(s)	246, 457
SfaNI	GCATC	2 cut(s)	47, 270
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SnaBI	TACGTA	2 cut(s)	540, 546
Sse9I	AATT	3 cut(s)	152, 490, 513
SsiI	CCGC	2 cut(s)	265, 318
SspMI	CTAG	2 cut(s)	62, 191
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	5 cut(s)	297, 397, 464, 542, 548
TaqI	TCGA	2 cut(s)	384, 405
TasI	AATT	3 cut(s)	152, 490, 513
TatI	WGTACW	3 cut(s)	363, 495, 550
TfiI	GAWTC	2 cut(s)	272, 610
Tru1I	TTAA	2 cut(s)	155, 248
Tru9I	TTAA	2 cut(s)	155, 248
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	228, 521, 602
VpaK11BI	GGWCC	1 cut(s)	325
VspI	ATTAAT	1 cut(s)	155
XapI	RAATTY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	542
XspI	CTAG	2 cut(s)	62, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.