Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Forward (+)

1724226 .. 1725214

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1020200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTATGCGAGATGCGGTAAGCTTGACTTGGGGGAACAGGTTTTCAGTATGATGAATAAGAAGCATGTTGTTTCATGGAGTTCCTTGATCTCAAGTTATGGCATTCATAGATATGGGAAAAAGGCAATACAAATTTTTGAAGACATGATCAATCATGGAGTTTCACCGAGTCACATTTCATTTGTTAGTGTCTTGGGGGCTTGTAGTCACGCAGATCTTGTTGAAGAGGGGGAAATATTGTTTGATTCTATGGTTAAAGAACATGGATTATATCCCAGTGTTGAGCACTATGCTTGTATGGTGGATCTTCTTGGTCGTGCCAATCGGTTAGATGAAGCAGCCAAAAGAGCAAGTAGAAGGCTATTTGAGCTTGAGCCTAGGAATGCTGGGAACTATGTACTTCTAGCTGATATTTATGCTGAAGCCAAGTTGTGGGACGATGTAAAAAGAGTGAAGAAGCATTTAGAAGCTCGAGAACTCCAAAAGGTCCCAGGTCGGAGTTGGATTGAAGTTAAAAGGAAGATATACTCATTCATTTCCATTGACAAGTTTAACCCACAGATGGAGCAGCTCCATGCATTGTTGGCTGAATTGTCGGCAGAGATGAAAGACCAGGGATATAAGCCGCAAACTAAAGTTGTCCTGTATGGTCTCGATGAGGAAGAGAAGGAACGAATAGTATTAGGCCATAGTGAAAAATTAGCAGTTGCATTTGGACTCATAAATTCCAAAAGAGGGGAAACTATTAGGATTTCCAAGAACTTAAGGTTATGTGAAGATTGTCACCCCGTTACAGAGTTCATTTCTAAATTCGCCAATAGAGAGATTCTGGTTCGAGATGTGAATCGGTTTCACCATTTCCGTGACGGGGTTTGTTCATGTGGAGATTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

299

Amino Acids

34.22

Weight (kDa)

7.66

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	22 - 69	5.9e-08	PPR repeat family
PPR	PF01535	24 - 54	3.7e-06	PPR repeat
E_motif	PF20431	112 - 170	6.2e-18	E motif
DYW_deaminase	PF14432	206 - 298	2.4e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	432
AciI	CCGC	2 cut(s)	15, 626
AclWI	GGATC	1 cut(s)	312
AcsI	RAATTY	3 cut(s)	132, 724, 809
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	4 cut(s)	432, 562, 735, 868
AflII	CTTAAG	1 cut(s)	763
AgsI	TTSAA	3 cut(s)	140, 224, 509
AjnI	CCWGG	2 cut(s)	490, 612
AluBI	AGCT	5 cut(s)	22, 370, 407, 470, 571
AluI	AGCT	5 cut(s)	22, 370, 407, 470, 571
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	471
AoxI	GGCC	1 cut(s)	685
ApeKI	GCWGC	2 cut(s)	338, 568
ApoI	RAATTY	3 cut(s)	132, 724, 809
AspA2I	CCTAGG	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	3 cut(s)	156, 776, 845
AvaI	CYCGRG	1 cut(s)	471
AvaII	GGWCC	1 cut(s)	487
AvrII	CCTAGG	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	350, 580
BccI	CCATC	1 cut(s)	556
BciT130I	CCWGG	2 cut(s)	492, 614
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	2 cut(s)	378, 404
BfrI	CTTAAG	1 cut(s)	763
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	3 cut(s)	339, 569, 626
BlnI	CCTAGG	1 cut(s)	377
BlsI	GCNGC	3 cut(s)	340, 570, 627
Bme1390I	CCNGG	2 cut(s)	492, 614
Bme18I	GGWCC	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	2 cut(s)	492, 614
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	2
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	76, 392
BsaBI	GATNNNNATC	1 cut(s)	843
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	3 cut(s)	377, 490, 613
Bsc4I	CCNNNNNNNGG	4 cut(s)	432, 562, 735, 868
Bse1I	ACTGG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	843
BseBI	CCWGG	2 cut(s)	492, 614
BseDI	CCNNGG	3 cut(s)	377, 490, 613
BseJI	GATNNNNATC	1 cut(s)	843
BseLI	CCNNNNNNNGG	4 cut(s)	432, 562, 735, 868
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	350, 580
BseYI	CCCAGC	1 cut(s)	386
BshFI	GGCC	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	471
BslFI	GGGAC	2 cut(s)	449, 473
BslI	CCNNNNNNNGG	4 cut(s)	432, 562, 735, 868
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	2 cut(s)	449, 473
BsmI	GAATGC	2 cut(s)	102, 388
BsnI	GGCC	1 cut(s)	687
Bso31I	GGTCTC	1 cut(s)	656
BsoBI	CYCGRG	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	87, 147, 214, 304
BspACI	CCGC	2 cut(s)	15, 626
BspANI	GGCC	1 cut(s)	687
BspLI	GGNNCC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	312
BspTI	CTTAAG	1 cut(s)	763
BspTNI	GGTCTC	1 cut(s)	656
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	377, 490, 613
BssMI	GATC	4 cut(s)	87, 147, 214, 304
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	492, 614
Bst6I	CTCTTC	2 cut(s)	219, 657
BstAFI	CTTAAG	1 cut(s)	763
BstKTI	GATC	4 cut(s)	90, 150, 217, 307
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	87, 147, 214, 304
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 367, 584
BstNI	CCWGG	2 cut(s)	492, 614
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	490, 612
BstV1I	GCAGC	2 cut(s)	350, 580
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	2 cut(s)	214, 304
BstYI	RGATCY	2 cut(s)	214, 304
BsuRI	GGCC	1 cut(s)	687
BtsIMutI	CAGTG	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	7 cut(s)	65, 75, 145, 155, 263, 575, 879
CviQI	GTAC	1 cut(s)	398
DpnI	GATC	4 cut(s)	89, 149, 216, 306
DpnII	GATC	4 cut(s)	87, 147, 214, 304
Eam1104I	CTCTTC	2 cut(s)	219, 657
EarI	CTCTTC	2 cut(s)	219, 657
Eco130I	CCWWGG	1 cut(s)	377
Eco31I	GGTCTC	1 cut(s)	656
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	471
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	490, 612
EcoT14I	CCWWGG	1 cut(s)	377
EcoT22I	ATGCAT	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	7 cut(s)	68, 78, 148, 158, 266, 578, 882
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	2 cut(s)	449, 473
FatI	CATG	7 cut(s)	64, 74, 144, 154, 262, 574, 878
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	339, 569, 626
Fsp4HI	GCNGC	3 cut(s)	339, 569, 626
FspBI	CTAG	2 cut(s)	378, 404
GluI	GCNGC	3 cut(s)	339, 569, 626
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	687
Hin1II	CATG	7 cut(s)	68, 78, 148, 158, 266, 578, 882
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	5 cut(s)	169, 245, 717, 826, 844
HphI	GGTGA	3 cut(s)	156, 776, 845
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	3 cut(s)	473, 653, 836
HpyAV	CCTTC	2 cut(s)	351, 661
HpyCH4V	TGCA	2 cut(s)	578, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 367, 584
Hsp92II	CATG	7 cut(s)	68, 78, 148, 158, 266, 578, 882
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	87, 147, 214, 304
LmnI	GCTCC	2 cut(s)	565, 576
LpnPI	CCDG	9 cut(s)	23, 289, 372, 477, 504, 599, 626, 656, 815
Lsp1109I	GCAGC	2 cut(s)	350, 580
LweI	GCATC	1 cut(s)	2
MaeI	CTAG	2 cut(s)	378, 404
MaeIII	GTNAC	5 cut(s)	170, 206, 782, 790, 863
MalI	GATC	4 cut(s)	89, 149, 216, 306
MboI	GATC	4 cut(s)	87, 147, 214, 304
MboII	GAAGA	7 cut(s)	152, 236, 299, 466, 532, 674, 788
MflI	RGATCY	2 cut(s)	214, 304
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	5 cut(s)	132, 590, 698, 724, 809
MlyI	GAGTC	2 cut(s)	178, 711
MmeI	TCCRAC	2 cut(s)	476, 482
MnlI	CCTC	3 cut(s)	220, 652, 728
Mph1103I	ATGCAT	1 cut(s)	580
MseI	TTAA	4 cut(s)	255, 513, 552, 764
MslI	CAYNNNNRTG	2 cut(s)	111, 861
MspCI	CTTAAG	1 cut(s)	763
MspR9I	CCNGG	2 cut(s)	492, 614
Mva1269I	GAATGC	2 cut(s)	102, 388
MvaI	CCWGG	2 cut(s)	492, 614
MwoI	GCNNNNNNNGC	3 cut(s)	347, 367, 584
NdeII	GATC	4 cut(s)	87, 147, 214, 304
NlaIII	CATG	7 cut(s)	68, 78, 148, 158, 266, 578, 882
NlaIV	GGNNCC	1 cut(s)	489
NmuCI	GTSAC	4 cut(s)	170, 206, 782, 863
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	1 cut(s)	68
PaeR7I	CTCGAG	1 cut(s)	471
PctI	GAATGC	2 cut(s)	102, 388
PfeI	GAWTC	3 cut(s)	245, 826, 844
PflMI	CCANNNNNTGG	1 cut(s)	432
PkrI	GCNGC	3 cut(s)	340, 570, 627
PleI	GAGTC	2 cut(s)	177, 711
PpsI	GAGTC	2 cut(s)	177, 711
PpuMI	RGGWCCY	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	2 cut(s)	490, 612
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	2 cut(s)	490, 612
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	487
PspPPI	RGGWCCY	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	214, 304
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	111, 861
SaqAI	TTAA	4 cut(s)	255, 513, 552, 764
SatI	GCNGC	3 cut(s)	339, 569, 626
Sau3AI	GATC	4 cut(s)	87, 147, 214, 304
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	2 cut(s)	178, 711
ScrFI	CCNGG	2 cut(s)	492, 614
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	9 cut(s)	24, 42, 372, 409, 472, 489, 496, 573, 770
SfaNI	GCATC	1 cut(s)	2
Sfr274I	CTCGAG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	487
SlaI	CTCGAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	2 cut(s)	111, 861
SmlI	CTYRAG	4 cut(s)	91, 371, 471, 763
SmoI	CTYRAG	4 cut(s)	91, 371, 471, 763
Sse9I	AATT	5 cut(s)	132, 590, 698, 724, 809
SsiI	CCGC	2 cut(s)	15, 626
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	2 cut(s)	378, 404
StyD4I	CCNGG	2 cut(s)	490, 612
StyI	CCWWGG	1 cut(s)	377
TaqI	TCGA	3 cut(s)	472, 654, 835
TasI	AATT	5 cut(s)	132, 590, 698, 724, 809
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	1 cut(s)	628
TfiI	GAWTC	3 cut(s)	245, 826, 844
Tru1I	TTAA	4 cut(s)	255, 513, 552, 764
Tru9I	TTAA	4 cut(s)	255, 513, 552, 764
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	4 cut(s)	170, 206, 782, 863
TseI	GCWGC	2 cut(s)	338, 568
Tsp45I	GTSAC	4 cut(s)	170, 206, 782, 863
TspDTI	ATGAA	9 cut(s)	63, 68, 95, 168, 348, 523, 620, 790, 867
TspGWI	ACGGA	1 cut(s)	851
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	432
Vha464I	CTTAAG	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	3 cut(s)	132, 724, 809
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XhoI	CTCGAG	1 cut(s)	471
XmaJI	CCTAGG	1 cut(s)	377
XspI	CTAG	2 cut(s)	378, 404
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.