Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Forward (+)

4792586 .. 4796897

Gene Structure 4312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG025400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2697 bp

ATGGCTGCTCTGGCTCACGCCCTGCTCGGAATCATCCCAGCTCGGTGTGGTCTCTGCCGAGCCATCAATCCCAACCTCTGCTGCTCTTGGCGCCCTTCACCTAATCCCTCTGGATTCTCCGTTTCCAGTAGGACCCACCTTGCTAATCTCACCGCCCGGTCCAGACTCAACGCCGCCCACACCCTCACCGTCCACAATGCCTCCGCTCCCACCACTCTTGAAATCCCCGTCACCTGTTACCAGCTTATTGGCGTTCCTGATCAAGCTGAGAAAGATGAGGTTATTAAAGCGGTAATGGATTTGAAGAATTCTGAAGTTGAAGAGGGTTATACTGAGAATGCTATTAAATCTCGGCAGGATCTCTTAATGGATGTGAGAGATAAGCTTATTTTTGAACCAGAATGTGCTGGTAATAGTAATGAAAATACCCGACCTAAATCTGCTCTTCAAATCCCTTGGGCATGGCTGGCAGCTGCTCTTTGCCTCCTTCAGGAGGTTAGGGAAGTAGAGCTTGTGCTAGATATTGGTCAAGCAGCTATTAAGCATCCAGATGCTAAGCCATATATTCATGATATTCTACTTTCTATGGCACTGGCTGAGTGTGCAACTGCAATGATTGGTTTTGAGAGCAACAAAGTGTCCCAGGGATTTGAAGCTATTTCTCGTGCTCAGAGTCTTCTAAGAAGTAAAAAATCTCTTGAGAAAATATCATTATTATCTAAGATTGACAGAGCTAAAACTATGTGTGAGTGTCTGATTGCATCAGAGCTTACTGATCTGAAACTAGAGGAAGCTCTTACGCTGTTTCTTCTCGGTAAGGATAATGAGGCTGCAGTTGTTGAAAAGCTGAAGAAGCTTGATGGAAGCAAAAACCAATTAATACAGTCTTTATGCAAACAAGGCGACCTCAAGCTAGCTCTTCAACTTTTTCCTCACGAACCCAACCCCTCCCAACAGACCTGTGAGTTCTTAATCCTTTCTTGCATCCGCCAGGATTCTCTCTCTGATGGGTTAGACGTGCATCGCCACCTTGTTGATGGTGGGTGGGACCAAGACCCTTTTTTGGCCACCAAACTTATAGGGATGTACTCTGAGTTGGACTCCATCGAGAATGCACGTGAAGTATTCGATAAAACTCGTAAAAGAACTATTTATATGTGGAATGCACTTTTTAGAGCCCTTACGTTGGCTGGCCATGGAACTGAGGTGCTAAATTTGTACAGACAAATGAATACAATTGGGGTTTCGTCTGATCGGTTTACGTATACGTATGTACTCAAAGCTTGTGTTGTTTCAGAGATTTTGAGTTCACTTCTCCAGAAGGGAAAGGAGATTCATGGGCATATTTTGCGTCACGGATATGGGGCCCATGTCCATGTAATGACCACTTTGTTGGATATGTATGCAAGGTTCGGGTGCGTTTCATGTGCTAGTAGTGTATTTGATCAGATGCAAAATAGAAATGTGGTTTCTTGGAGTGCTATGATTGCTTGCTATGCAAAGAATGCAAGGCCTTATGAAGCTTTGGAACTTTTTCGGAAGATGATACTAGAGGCCCCTGATTTGTTTCCCAACTCCGTGACCATGGTTAGTGTTCTTCAAGCTTGTGCAGCTCTTGCTGCCTTGGAGCAGGGGAAGTTCATTCATGGGTACATCCTGAGAAGGGGTCTTGATTCAACCCTTCCGGTTATGAGTAGCCTTATCACAATGTATGCGAGATGTGGTAAGCTTGAGCTGGGCCAACAAGTTTTCAATATGATAAAAAAGAAGGATGTGGTATCATGGAATTCCTTGATTTCAAGTTATGGAATTCATGGATATGGAAAGAGGGCAATTCAAATTTTTGAAGACATGATCAATCATGGAGTATCACCGAGTCATATTTCATTTGTTAGTGTTTTGGGGGCCTGTAGTCATGAAGGTCTTGTTGACGAGGGGAAGTTAATATTCCAGTCTATGGTGAGAGATCATGGATTATATCCCAGCATTGAGCAGTATGCTTGTATGGTGGATCTTCTTGGTCGTGCTAATCGGTTAGATGAAGCAGCCAAGGTCATTGAAGATATGCGGATTGAACCAGGAGCTCAAGTTTGGGGTGCTCTTCTTGGATCATGTAGGATACATGGTAATGTTGAGCTGGCAGAGAGAGCAAGCAAAAGGTTATTTGAGCTTGAGCCTAGGAATGCTGGGAATTATGTACTTCTAGCTGATATTTATGCTGAGGCCAAGATGTGGGATGAGGTAAAAAGAGTAAAAAAACTTCTAGAAGCTCGGGAACTTCAAAAGGTACCAGGTCGCAGTTGGATTGAAGTTAATAGGAAGATATACTCATTCGATTCTGTTGACGAGTTTAACCCACAAATGGAGCAACTTCATGCACTGCTGGGTGAATTGTCAATAGAGATGAAAGGACGAGGATATAAGCCACAGACTAAAGTTGTCCTCTATGATCTTGACGAGGAAGAGAAGGAACGTATAGTATTAGGCCATAGTGAAAAGTTAGCAGTTGCATTTGGTCTCATCAATACCAAAAATGGGGAAACTATTCGGATTTCCAAGAATTTGAGGCTATGTGAAGATTGCCATTATGTTACAAAGTTCATATCCAAGTTTACCAATAGAGAGATTCTAGTCCGAGATGTAAATCGGTTTCACCATTTCCGTGACGGGGTTTGTTCATGTGGGGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

898

Amino Acids

100.62

Weight (kDa)

6.73

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm_PDR	PF25515	150 - 243	2e-23	Plastid division regulator ARM repeat
PPR_2	PF13041	383 - 429	4.9e-06	PPR repeat family
PPR_2	PF13041	487 - 537	5.3e-06	PPR repeat family
PPR	PF01535	490 - 516	5.6e-06	PPR repeat
PPR_2	PF13041	590 - 638	1.2e-09	PPR repeat family
PPR	PF01535	593 - 623	1e-06	PPR repeat
E_motif	PF20431	708 - 770	3.1e-20	E motif
DYW_deaminase	PF14432	806 - 898	1.2e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2287
AccB1I	GGYRCC	2 cut(s)	90, 2287
AccB7I	CCANNNNNTGG	2 cut(s)	1957, 2232
AccBSI	CCGCTC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	1265
AciI	CCGC	6 cut(s)	153, 174, 204, 290, 988, 2068
AclWI	GGATC	3 cut(s)	366, 2019, 2116
AcoI	YGGCCR	2 cut(s)	1065, 1192
AcsI	RAATTY	6 cut(s)	307, 1213, 1786, 1809, 1839, 2560
AcuI	CTGAAG	3 cut(s)	333, 473, 869
AcvI	CACGTG	1 cut(s)	1118
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	6 cut(s)	1088, 1220, 1275, 1652, 2199, 2289
AjiI	CACGTC	1 cut(s)	1018
AjnI	CCWGG	4 cut(s)	642, 990, 2077, 2290
Alw21I	GWGCWC	3 cut(s)	670, 2086, 2101
Alw26I	GTCTC	2 cut(s)	56, 2522
AlwI	GGATC	3 cut(s)	366, 2019, 2116
Ama87I	CYCGRG	1 cut(s)	2271
AoxI	GGCC	9 cut(s)	1065, 1192, 1365, 1511, 1554, 1738, 1905, 2223, 2485
ApaI	GGGCCC	1 cut(s)	1369
ApeKI	GCWGC	9 cut(s)	5, 81, 470, 473, 533, 830, 1610, 1619, 2045
ApoI	RAATTY	6 cut(s)	307, 1213, 1786, 1809, 1839, 2560
AseI	ATTAAT	1 cut(s)	878
Asp700I	GAANNNNTTC	2 cut(s)	1533, 2544
Asp718I	GGTACC	1 cut(s)	2287
AspA2I	CCTAGG	1 cut(s)	2177
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	8 cut(s)	132, 159, 1048, 1365, 1366, 1555, 1738, 1905
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	8 cut(s)	90, 142, 178, 223, 1863, 1972, 2399, 2645
AsuNHI	GCTAGC	1 cut(s)	913
AvaI	CYCGRG	1 cut(s)	2271
AvaII	GGWCC	3 cut(s)	132, 159, 1048
AvrII	CCTAGG	1 cut(s)	2177
BaeGI	GKGCMC	1 cut(s)	1369
BalI	TGGCCA	2 cut(s)	1067, 1194
BanI	GGYRCC	2 cut(s)	90, 2287
BanII	GRGCYC	3 cut(s)	1180, 1369, 2086
BarI	GAAGNNNNNNTAC	2 cut(s)	2244, 2276
BauI	CACGAG	1 cut(s)	663
BbrPI	CACGTG	1 cut(s)	1118
BbsI	GAAGAC	2 cut(s)	668, 1854
Bbv12I	GWGCWC	3 cut(s)	670, 2086, 2101
BbvCI	CCTCAGC	1 cut(s)	2220
BbvI	GCAGC	8 cut(s)	68, 460, 482, 545, 817, 1606, 1622, 2057
BccI	CCATC	5 cut(s)	71, 854, 1001, 1031, 1112
BciT130I	CCWGG	4 cut(s)	644, 992, 2079, 2292
BciVI	GTATCC	1 cut(s)	2112
BclI	TGATCA	3 cut(s)	259, 1444, 1854
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	56, 2522
BfaI	CTAG	9 cut(s)	518, 785, 914, 1431, 1550, 2178, 2204, 2264, 2630
BfmI	CTRYAG	2 cut(s)	831, 1909
BfoI	RGCGCY	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	2112
BlnI	CCTAGG	1 cut(s)	2177
BlpI	GCTNAGC	1 cut(s)	555
Bme1390I	CCNGG	5 cut(s)	157, 644, 992, 2079, 2292
Bme18I	GGWCC	3 cut(s)	132, 159, 1048
BmeT110I	CYCGRG	1 cut(s)	2271
BmgBI	CACGTC	1 cut(s)	1018
BmgT120I	GGNCC	8 cut(s)	132, 159, 1048, 1365, 1366, 1555, 1738, 1905
BmiI	GGNNCC	8 cut(s)	92, 134, 1049, 1366, 1367, 1557, 1906, 2289
BmrFI	CCNGG	5 cut(s)	157, 644, 992, 2079, 2292
BmsI	GCATC	6 cut(s)	541, 553, 770, 993, 1030, 1440
BmtI	GCTAGC	1 cut(s)	917
BpiI	GAAGAC	2 cut(s)	668, 1854
BplI	GAGNNNNNCTC	2 cut(s)	1085, 1117
BpmI	CTGGAG	1 cut(s)	1301
Bpu10I	CCTNAGC	1 cut(s)	2220
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	5 cut(s)	719, 893, 1751, 2070, 2192
BpuMI	CCSGG	1 cut(s)	157
BsaAI	YACGTR	3 cut(s)	1118, 1263, 1269
BsaBI	GATNNNNATC	1 cut(s)	2643
BsaHI	GRCGYC	1 cut(s)	91
BsaI	GGTCTC	2 cut(s)	56, 2522
BsaJI	CCNNGG	8 cut(s)	455, 642, 643, 1195, 1584, 1623, 2049, 2177
BsaWI	WCCGGW	1 cut(s)	1684
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 2073, 2103
Bse1I	ACTGG	3 cut(s)	126, 597, 1951
Bse3DI	GCAATG	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	2643
BseBI	CCWGG	4 cut(s)	644, 992, 2079, 2292
BseDI	CCNNGG	8 cut(s)	455, 642, 643, 1195, 1584, 1623, 2049, 2177
BseGI	GGATG	8 cut(s)	33, 376, 544, 984, 1089, 1653, 1777, 2242
BseJI	GATNNNNATC	1 cut(s)	2643
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	8 cut(s)	258, 324, 588, 683, 1083, 1194, 1649, 2211
BseNI	ACTGG	3 cut(s)	126, 597, 1951
BseSI	GKGCMC	1 cut(s)	1369
BseXI	GCAGC	8 cut(s)	68, 460, 482, 545, 817, 1606, 1622, 2057
BseYI	CCCAGC	5 cut(s)	37, 1735, 1982, 2186, 2383
BsgI	GTGCAG	1 cut(s)	1629
BshFI	GGCC	9 cut(s)	1067, 1194, 1367, 1513, 1556, 1740, 1907, 2225, 2487
BshNI	GGYRCC	2 cut(s)	90, 2287
BsiHKAI	GWGCWC	3 cut(s)	670, 2086, 2101
BsiHKCI	CYCGRG	1 cut(s)	2271
BsiSI	CCGG	2 cut(s)	157, 1685
BslFI	GGGAC	2 cut(s)	625, 1061
BsmAI	GTCTC	2 cut(s)	56, 2522
BsmFI	GGGAC	2 cut(s)	625, 1061
BsmI	GAATGC	5 cut(s)	343, 1117, 1168, 1510, 2188
BsnI	GGCC	9 cut(s)	1067, 1194, 1367, 1513, 1556, 1740, 1907, 2225, 2487
Bso31I	GGTCTC	2 cut(s)	56, 2522
BsoBI	CYCGRG	1 cut(s)	2271
Bsp120I	GGGCCC	1 cut(s)	1365
Bsp1286I	GDGCHC	5 cut(s)	670, 1180, 1369, 2086, 2101
Bsp1407I	TGTACA	1 cut(s)	1218
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	2 cut(s)	1195, 1584
BspACI	CCGC	6 cut(s)	153, 174, 204, 290, 988, 2068
BspANI	GGCC	9 cut(s)	1067, 1194, 1367, 1513, 1556, 1740, 1907, 2225, 2487
BspCNI	CTCAG	8 cut(s)	259, 325, 589, 682, 1084, 1195, 1650, 2212
BspHI	TCATGA	2 cut(s)	568, 1915
BspLI	GGNNCC	8 cut(s)	92, 134, 1049, 1366, 1367, 1557, 1906, 2289
BspMAI	CTGCAG	1 cut(s)	835
BspOI	GCTAGC	1 cut(s)	917
BspPI	GGATC	3 cut(s)	366, 2019, 2116
BspQI	GCTCTTC	3 cut(s)	450, 924, 2106
BspT107I	GGYRCC	2 cut(s)	90, 2287
BspTNI	GGTCTC	2 cut(s)	56, 2522
BsrBI	CCGCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	618
BsrGI	TGTACA	1 cut(s)	1218
BsrI	ACTGG	3 cut(s)	126, 597, 1951
BssECI	CCNNGG	8 cut(s)	455, 642, 643, 1195, 1584, 1623, 2049, 2177
BssNAI	GTATAC	1 cut(s)	1266
BssNI	GRCGYC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	6 cut(s)	455, 1195, 1584, 1623, 2049, 2177
Bst1107I	GTATAC	1 cut(s)	1266
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	4 cut(s)	644, 992, 2079, 2292
Bst4CI	ACNGT	2 cut(s)	190, 885
Bst6I	CTCTTC	5 cut(s)	315, 450, 924, 2106, 2457
BstACI	GRCGYC	1 cut(s)	91
BstAPI	GCANNNNNTGC	3 cut(s)	1348, 1505, 1616
BstAUI	TGTACA	1 cut(s)	1218
BstBAI	YACGTR	3 cut(s)	1118, 1263, 1269
BstC8I	GCNNGC	6 cut(s)	468, 915, 1192, 1492, 2139, 2152
BstDSI	CCRYGG	2 cut(s)	1195, 1584
BstENI	CCTNNNNNAGG	2 cut(s)	488, 491
BstF5I	GGATG	8 cut(s)	33, 376, 544, 984, 1089, 1653, 1777, 2242
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstMAI	GTCTC	2 cut(s)	56, 2522
BstNI	CCWGG	4 cut(s)	644, 992, 2079, 2292
BstSCI	CCNGG	5 cut(s)	155, 642, 990, 2077, 2290
BstSFI	CTRYAG	2 cut(s)	831, 1909
BstSLI	GKGCMC	1 cut(s)	1369
BstSNI	TACGTA	2 cut(s)	1263, 1269
BstV1I	GCAGC	8 cut(s)	68, 460, 482, 545, 817, 1606, 1622, 2057
BstV2I	GAAGAC	2 cut(s)	668, 1854
BstX2I	RGATCY	2 cut(s)	358, 2011
BstXI	CCANNNNNNTGG	2 cut(s)	248, 1393
BstYI	RGATCY	2 cut(s)	358, 2011
BstZ17I	GTATAC	1 cut(s)	1266
BsuI	GTATCC	1 cut(s)	2112
BsuRI	GGCC	9 cut(s)	1067, 1194, 1367, 1513, 1556, 1740, 1907, 2225, 2487
BtgI	CCRYGG	2 cut(s)	1195, 1584
BtgZI	GCGATG	1 cut(s)	1007
BtrI	CACGTC	1 cut(s)	1018
BtsCI	GGATG	8 cut(s)	33, 376, 544, 984, 1089, 1653, 1777, 2242
BtsI	GCAGTG	1 cut(s)	2378
BtsIMutI	CAGTG	2 cut(s)	590, 2378
Cac8I	GCNNGC	6 cut(s)	468, 915, 1192, 1492, 2139, 2152
CciI	TCATGA	2 cut(s)	568, 1915
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	8 cut(s)	132, 159, 1048, 1365, 1366, 1555, 1738, 1905
CseI	GACGC	1 cut(s)	1340
CsiI	ACCWGGT	1 cut(s)	2290
Csp6I	GTAC	6 cut(s)	1087, 1219, 1274, 1651, 2198, 2288
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviQI	GTAC	6 cut(s)	1087, 1219, 1274, 1651, 2198, 2288
DinI	GGCGCC	1 cut(s)	92
EaeI	YGGCCR	2 cut(s)	1065, 1192
Eam1104I	CTCTTC	5 cut(s)	315, 450, 924, 2106, 2457
EarI	CTCTTC	5 cut(s)	315, 450, 924, 2106, 2457
EciI	GGCGGA	1 cut(s)	977
Ecl136II	GAGCTC	1 cut(s)	2084
Eco105I	TACGTA	2 cut(s)	1263, 1269
Eco130I	CCWWGG	6 cut(s)	455, 1195, 1584, 1623, 2049, 2177
Eco147I	AGGCCT	1 cut(s)	1513
Eco24I	GRGCYC	3 cut(s)	1180, 1369, 2086
Eco31I	GGTCTC	2 cut(s)	56, 2522
Eco47I	GGWCC	3 cut(s)	132, 159, 1048
Eco53kI	GAGCTC	1 cut(s)	2084
Eco57I	CTGAAG	3 cut(s)	333, 473, 869
Eco72I	CACGTG	1 cut(s)	1118
Eco88I	CYCGRG	1 cut(s)	2271
EcoICRI	GAGCTC	1 cut(s)	2084
EcoNI	CCTNNNNNAGG	2 cut(s)	488, 491
EcoO109I	RGGNCCY	4 cut(s)	132, 1365, 1555, 1905
EcoRI	GAATTC	3 cut(s)	307, 1786, 1809
EcoRII	CCWGG	4 cut(s)	642, 990, 2077, 2290
EcoT14I	CCWWGG	6 cut(s)	455, 1195, 1584, 1623, 2049, 2177
EcoT38I	GRGCYC	3 cut(s)	1180, 1369, 2086
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
ErhI	CCWWGG	6 cut(s)	455, 1195, 1584, 1623, 2049, 2177
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FaqI	GGGAC	2 cut(s)	625, 1061
FbaI	TGATCA	3 cut(s)	259, 1444, 1854
FblI	GTMKAC	1 cut(s)	1265
FokI	GGATG	8 cut(s)	20, 383, 531, 971, 1096, 1640, 1784, 2249
FriOI	GRGCYC	3 cut(s)	1180, 1369, 2086
FspBI	CTAG	9 cut(s)	518, 785, 914, 1431, 1550, 2178, 2204, 2264, 2630
GlaI	GCGC	1 cut(s)	92
GsaI	CCCAGC	5 cut(s)	41, 1739, 1986, 2190, 2387
GsuI	CTGGAG	1 cut(s)	1301
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	9 cut(s)	1067, 1194, 1367, 1513, 1556, 1740, 1907, 2225, 2487
HapII	CCGG	2 cut(s)	157, 1685
HgaI	GACGC	1 cut(s)	1340
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	2 cut(s)	1930, 2344
HindII	GTYRAC	2 cut(s)	1930, 2344
HindIII	AAGCTT	6 cut(s)	383, 854, 1281, 1521, 1602, 1727
HpaII	CCGG	2 cut(s)	157, 1685
HphI	GGTGA	8 cut(s)	90, 142, 178, 223, 1863, 1972, 2399, 2645
Hpy166II	GTNNAC	7 cut(s)	193, 1260, 1266, 1310, 1930, 2344, 2613
Hpy8I	GTNNAC	7 cut(s)	193, 1260, 1266, 1310, 1930, 2344, 2613
HpyAV	CCTTC	8 cut(s)	105, 497, 1315, 1656, 1691, 1762, 1913, 2461
HpyCH4III	ACNGT	2 cut(s)	190, 885
HpyCH4IV	ACGT	6 cut(s)	1017, 1117, 1184, 1262, 1268, 2473
HpySE526I	ACGT	6 cut(s)	1017, 1117, 1184, 1262, 1268, 2473
Hsp92I	GRCGYC	1 cut(s)	91
HspAI	GCGC	1 cut(s)	91
KasI	GGCGCC	1 cut(s)	90
KpnI	GGTACC	1 cut(s)	2291
Ksp22I	TGATCA	3 cut(s)	259, 1444, 1854
LguI	GCTCTTC	3 cut(s)	450, 924, 2106
LmnI	GCTCC	4 cut(s)	211, 1627, 2081, 2365
Lsp1109I	GCAGC	8 cut(s)	68, 460, 482, 545, 817, 1606, 1622, 2057
LweI	GCATC	6 cut(s)	541, 553, 770, 993, 1030, 1440
MabI	ACCWGGT	1 cut(s)	2290
MaeI	CTAG	9 cut(s)	518, 785, 914, 1431, 1550, 2178, 2204, 2264, 2630
MaeII	ACGT	6 cut(s)	1017, 1117, 1184, 1262, 1268, 2473
MaeIII	GTNAC	6 cut(s)	229, 236, 1352, 1579, 2590, 2663
MbiI	CCGCTC	1 cut(s)	206
MfeI	CAATTG	1 cut(s)	1236
MflI	RGATCY	2 cut(s)	358, 2011
MhlI	GDGCHC	5 cut(s)	670, 1180, 1369, 2086, 2101
MlsI	TGGCCA	2 cut(s)	1067, 1194
MluNI	TGGCCA	2 cut(s)	1067, 1194
Mly113I	GGCGCC	1 cut(s)	91
MlyI	GAGTC	4 cut(s)	159, 682, 1094, 1885
MmeI	TCCRAC	3 cut(s)	1077, 1374, 2282
Mox20I	TGGCCA	2 cut(s)	1067, 1194
MroXI	GAANNNNTTC	2 cut(s)	1533, 2544
MscI	TGGCCA	2 cut(s)	1067, 1194
MseI	TTAA	9 cut(s)	285, 345, 365, 540, 878, 971, 1943, 2313, 2352
MslI	CAYNNNNRTG	6 cut(s)	549, 1359, 1374, 1818, 2127, 2661
Msp20I	TGGCCA	2 cut(s)	1067, 1194
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	157, 1685
MspR9I	CCNGG	5 cut(s)	157, 644, 992, 2079, 2292
MunI	CAATTG	1 cut(s)	1236
Mva1269I	GAATGC	5 cut(s)	343, 1117, 1168, 1510, 2188
MvaI	CCWGG	4 cut(s)	644, 992, 2079, 2292
NarI	GGCGCC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	2 cut(s)	1195, 1584
NheI	GCTAGC	1 cut(s)	913
NlaIV	GGNNCC	8 cut(s)	92, 134, 1049, 1366, 1367, 1557, 1906, 2289
NmeAIII	GCCGAG	2 cut(s)	83, 331
NmuCI	GTSAC	4 cut(s)	229, 1352, 1579, 2663
PagI	TCATGA	2 cut(s)	568, 1915
PasI	CCCWGGG	1 cut(s)	643
PceI	AGGCCT	1 cut(s)	1513
PciSI	GCTCTTC	3 cut(s)	450, 924, 2106
PctI	GAATGC	5 cut(s)	343, 1117, 1168, 1510, 2188
PdmI	GAANNNNTTC	2 cut(s)	1533, 2544
PfeI	GAWTC	7 cut(s)	30, 114, 995, 1333, 1673, 2336, 2626
PflMI	CCANNNNNTGG	2 cut(s)	1957, 2232
PleI	GAGTC	4 cut(s)	159, 681, 1094, 1884
PluTI	GGCGCC	1 cut(s)	94
PmaCI	CACGTG	1 cut(s)	1118
PmlI	CACGTG	1 cut(s)	1118
PpsI	GAGTC	4 cut(s)	159, 681, 1094, 1884
Ppu21I	YACGTR	3 cut(s)	1118, 1263, 1269
PpuMI	RGGWCCY	1 cut(s)	132
PshBI	ATTAAT	1 cut(s)	878
Psp124BI	GAGCTC	1 cut(s)	2086
Psp5II	RGGWCCY	1 cut(s)	132
Psp6I	CCWGG	4 cut(s)	642, 990, 2077, 2290
PspCI	CACGTG	1 cut(s)	1118
PspFI	CCCAGC	5 cut(s)	37, 1735, 1982, 2186, 2383
PspGI	CCWGG	4 cut(s)	642, 990, 2077, 2290
PspN4I	GGNNCC	8 cut(s)	92, 134, 1049, 1366, 1367, 1557, 1906, 2289
PspOMI	GGGCCC	1 cut(s)	1365
PspPI	GGNCC	8 cut(s)	132, 159, 1048, 1365, 1366, 1555, 1738, 1905
PspPPI	RGGWCCY	1 cut(s)	132
PsrI	GAACNNNNNNTAC	2 cut(s)	1394, 1426
PstI	CTGCAG	1 cut(s)	835
PsuI	RGATCY	2 cut(s)	358, 2011
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	6 cut(s)	1088, 1220, 1275, 1652, 2199, 2289
RsaNI	GTAC	6 cut(s)	1087, 1219, 1274, 1651, 2198, 2288
RseI	CAYNNNNRTG	6 cut(s)	549, 1359, 1374, 1818, 2127, 2661
SacI	GAGCTC	1 cut(s)	2086
SapI	GCTCTTC	3 cut(s)	450, 924, 2106
SaqAI	TTAA	9 cut(s)	285, 345, 365, 540, 878, 971, 1943, 2313, 2352
Sau96I	GGNCC	8 cut(s)	132, 159, 1048, 1365, 1366, 1555, 1738, 1905
SchI	GAGTC	4 cut(s)	159, 682, 1094, 1885
ScrFI	CCNGG	5 cut(s)	157, 644, 992, 2079, 2292
SduI	GDGCHC	5 cut(s)	670, 1180, 1369, 2086, 2101
SexAI	ACCWGGT	1 cut(s)	2290
SfaNI	GCATC	6 cut(s)	541, 553, 770, 993, 1030, 1440
SfcI	CTRYAG	2 cut(s)	831, 1909
SfoI	GGCGCC	1 cut(s)	92
SinI	GGWCC	3 cut(s)	132, 159, 1048
SmiMI	CAYNNNNRTG	6 cut(s)	549, 1359, 1374, 1818, 2127, 2661
SmlI	CTYRAG	5 cut(s)	698, 908, 1730, 2085, 2171
SmoI	CTYRAG	5 cut(s)	698, 908, 1730, 2085, 2171
SnaBI	TACGTA	2 cut(s)	1263, 1269
SseBI	AGGCCT	1 cut(s)	1513
SsiI	CCGC	6 cut(s)	153, 174, 204, 290, 988, 2068
SspDI	GGCGCC	1 cut(s)	90
SspI	AATATT	1 cut(s)	1947
SspMI	CTAG	9 cut(s)	518, 785, 914, 1431, 1550, 2178, 2204, 2264, 2630
SstI	GAGCTC	1 cut(s)	2086
StuI	AGGCCT	1 cut(s)	1513
StyD4I	CCNGG	5 cut(s)	155, 642, 990, 2077, 2290
StyI	CCWWGG	6 cut(s)	455, 1195, 1584, 1623, 2049, 2177
TaaI	ACNGT	2 cut(s)	190, 885
TaiI	ACGT	6 cut(s)	1020, 1120, 1187, 1265, 1271, 2476
TaqI	TCGA	3 cut(s)	1107, 1128, 2334
TatI	WGTACW	4 cut(s)	1086, 1218, 1273, 2197
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	7 cut(s)	30, 114, 995, 1333, 1673, 2336, 2626
Tru1I	TTAA	9 cut(s)	285, 345, 365, 540, 878, 971, 1943, 2313, 2352
Tru9I	TTAA	9 cut(s)	285, 345, 365, 540, 878, 971, 1943, 2313, 2352
TscAI	CASTG	2 cut(s)	597, 2385
TseFI	GTSAC	4 cut(s)	229, 1352, 1579, 2663
TseI	GCWGC	9 cut(s)	5, 81, 470, 473, 533, 830, 1610, 1619, 2045
Tsp45I	GTSAC	4 cut(s)	229, 1352, 1579, 2663
TspGWI	ACGGA	4 cut(s)	109, 1371, 1567, 2651
TspRI	CASTG	2 cut(s)	597, 2385
Van91I	CCANNNNNTGG	2 cut(s)	1957, 2232
VpaK11BI	GGWCC	3 cut(s)	132, 159, 1048
VspI	ATTAAT	1 cut(s)	878
XagI	CCTNNNNNAGG	2 cut(s)	488, 491
XapI	RAATTY	6 cut(s)	307, 1213, 1786, 1809, 1839, 2560
XbaI	TCTAGA	1 cut(s)	2263
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1034, 2298
XmaJI	CCTAGG	1 cut(s)	2177
XmiI	GTMKAC	1 cut(s)	1265
XmnI	GAANNNNTTC	2 cut(s)	1533, 2544
XspI	CTAG	9 cut(s)	518, 785, 914, 1431, 1550, 2178, 2204, 2264, 2630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.