Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Reverse (-)

64179529 .. 64180612

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTGCTCTGGCTCACGCCCTGCTCGGAATCATCCCAGCTCGGTGTGGTCTCTGCCGAGCCATCAATCCCAACCTCTGCTGCTCTTGGCGCCCTTTACCTAATCCCTCTGGATTCTCCATTTCCAGTAGGACCCACCTTGCTAATCTCACCGCCCGGTCCAGACTCAACGCCGCCCACACCCTCACCGTCCACAATGCTTCGGCTCCCACCACTCTTGAAATCCCCGTCACCTGTTACCAGCTTATTGGTGTTCCTGATCAAGCTGAGAAAGATGAGGTTATTAAAGCGGTTATGGATTTGAAGAATTCTCAAGTTGAAGAGGGTTATACTGAGAATGCTATTAAATCTCGGCAGGATCTCTTAACGGATGTGAGAGATAAGCTTATTTTTGAACCAGAATATGCTGGTAATAGTAATGAAAATATCCGACCTAAATCTGCTCTTCAGATCCCTTGGGCATGGTTGGCAGCTGCTCTTTGCCTCCTTCAGGAGGTATATTTTTGTCTTTGTACAATCTATTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

176

Amino Acids

19.41

Weight (kDa)

6.41

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	90
AciI	CCGC	3 cut(s)	153, 174, 290
AclWI	GGATC	2 cut(s)	366, 445
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	2 cut(s)	431, 473
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	2 cut(s)	490, 493
AgsI	TTSAA	4 cut(s)	221, 304, 320, 395
AluBI	AGCT	5 cut(s)	41, 244, 266, 385, 473
AluI	AGCT	5 cut(s)	41, 244, 266, 385, 473
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	366, 445
ApeKI	GCWGC	4 cut(s)	5, 81, 470, 473
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	132, 159
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	142, 178, 223
AvaII	GGWCC	2 cut(s)	132, 159
BanI	GGYRCC	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	68, 460, 482
BccI	CCATC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	94
BisI	GCNGC	5 cut(s)	6, 82, 174, 471, 474
BlsI	GCNGC	5 cut(s)	7, 83, 175, 472, 475
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	2 cut(s)	132, 159
BmgT120I	GGNCC	2 cut(s)	132, 159
BmiI	GGNNCC	3 cut(s)	92, 134, 207
BmrFI	CCNGG	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	91
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 493
Bse1I	ACTGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	2 cut(s)	33, 376
BseLI	CCNNNNNNNGG	2 cut(s)	490, 493
BseMII	CTCAG	2 cut(s)	258, 324
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	68, 460, 482
BseYI	CCCAGC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	490, 493
BsmAI	GTCTC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	512
Bsp143I	GATC	3 cut(s)	259, 358, 450
BspACI	CCGC	3 cut(s)	153, 174, 290
BspCNI	CTCAG	2 cut(s)	259, 325
BspLI	GGNNCC	3 cut(s)	92, 134, 207
BspPI	GGATC	2 cut(s)	366, 445
BspQI	GCTCTTC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	56
BsrGI	TGTACA	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	3 cut(s)	259, 358, 450
BssNI	GRCGYC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	315, 450
BstACI	GRCGYC	1 cut(s)	91
BstAUI	TGTACA	1 cut(s)	512
BstDEI	CTNAG	2 cut(s)	267, 333
BstENI	CCTNNNNNAGG	2 cut(s)	488, 491
BstF5I	GGATG	2 cut(s)	33, 376
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	262, 361, 453
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	3 cut(s)	259, 358, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 90, 467
BstSCI	CCNGG	1 cut(s)	155
BstV1I	GCAGC	3 cut(s)	68, 460, 482
BstX2I	RGATCY	2 cut(s)	358, 450
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	2 cut(s)	358, 450
BtsCI	GGATG	2 cut(s)	33, 376
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	132, 159
Csp6I	GTAC	1 cut(s)	513
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviAII	CATG	1 cut(s)	462
CviJI	RGCY	9 cut(s)	5, 14, 41, 62, 206, 244, 266, 385, 473
CviKI_1	RGCY	9 cut(s)	5, 14, 41, 62, 206, 244, 266, 385, 473
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	2 cut(s)	267, 333
DinI	GGCGCC	1 cut(s)	92
DpnI	GATC	3 cut(s)	261, 360, 452
DpnII	GATC	3 cut(s)	259, 358, 450
Eam1104I	CTCTTC	2 cut(s)	315, 450
EarI	CTCTTC	2 cut(s)	315, 450
Eco130I	CCWWGG	1 cut(s)	455
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	132, 159
Eco57I	CTGAAG	2 cut(s)	431, 473
EcoNI	CCTNNNNNAGG	2 cut(s)	488, 491
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	455
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	1 cut(s)	465
FaiI	YATR	5 cut(s)	296, 330, 405, 463, 499
FatI	CATG	1 cut(s)	461
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	5 cut(s)	6, 82, 174, 471, 474
FokI	GGATG	2 cut(s)	20, 383
Fsp4HI	GCNGC	5 cut(s)	6, 82, 174, 471, 474
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	5 cut(s)	6, 82, 174, 471, 474
GsaI	CCCAGC	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	94
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	465
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	3 cut(s)	30, 114, 165
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	3 cut(s)	142, 178, 223
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	29, 431, 450
Hpy188III	TCNNGA	5 cut(s)	111, 162, 218, 257, 491
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 90, 467
HpyF3I	CTNAG	2 cut(s)	267, 333
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	465
HspAI	GCGC	1 cut(s)	91
KasI	GGCGCC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	259, 358, 450
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	3 cut(s)	68, 460, 482
MaeIII	GTNAC	2 cut(s)	229, 236
MalI	GATC	3 cut(s)	261, 360, 452
MboI	GATC	3 cut(s)	259, 358, 450
MboII	GAAGA	3 cut(s)	316, 332, 437
MflI	RGATCY	2 cut(s)	358, 450
MluCI	AATT	1 cut(s)	307
Mly113I	GGCGCC	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	7 cut(s)	86, 118, 194, 271, 316, 487, 494
MseI	TTAA	3 cut(s)	285, 345, 365
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	3 cut(s)	11, 90, 467
NarI	GGCGCC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	3 cut(s)	259, 358, 450
NlaIII	CATG	1 cut(s)	465
NlaIV	GGNNCC	3 cut(s)	92, 134, 207
NmeAIII	GCCGAG	2 cut(s)	83, 331
NmuCI	GTSAC	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	450
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	30, 114
PkrI	GCNGC	5 cut(s)	7, 83, 175, 472, 475
PleI	GAGTC	1 cut(s)	159
PluTI	GGCGCC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	37
PspN4I	GGNNCC	3 cut(s)	92, 134, 207
PspPI	GGNCC	2 cut(s)	132, 159
PspPPI	RGGWCCY	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	358, 450
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	285, 345, 365
SatI	GCNGC	5 cut(s)	6, 82, 174, 471, 474
Sau3AI	GATC	3 cut(s)	259, 358, 450
Sau96I	GGNCC	2 cut(s)	132, 159
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	157
SfoI	GGCGCC	1 cut(s)	92
SinI	GGWCC	2 cut(s)	132, 159
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	3 cut(s)	153, 174, 290
SspDI	GGCGCC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	190
TasI	AATT	1 cut(s)	307
TatI	WGTACW	1 cut(s)	512
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	30, 114
Tru1I	TTAA	3 cut(s)	285, 345, 365
Tru9I	TTAA	3 cut(s)	285, 345, 365
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	4 cut(s)	5, 81, 470, 473
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	383
VpaK11BI	GGWCC	2 cut(s)	132, 159
XagI	CCTNNNNNAGG	2 cut(s)	488, 491
XapI	RAATTY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.