Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009583.1

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Reverse (-)

38477 .. 39751

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009583.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atgtatgcaaggttcgggtgcgtttcatgtgctagtagtgtatttgatcatatgcaaaatagaaatgtggtttcttggagtgctatgattgcttgctatgcaaagaatgcaaggccttatgaagctttggaactttttcggaagatgatactagaggcccctgatttgtttcccaattccgtgaccatggttagtgttcttcaagcttgtgcagctcttgctgccttggagcaggggaagttcattcatgggtacatcctgagaaggggtcttgattcaacccttccggtcatgagtagccttatcacaatgtatgcgagatgtggtaagcttgagctgggccaacaagttttcaatttgataaaaaagaaggatgtggtatcatggaattccttgatttcaagttatggaattcatggatatggaaagagggcaattcaaatttttgaagacatgatcaatcatggagtatcaccgagtcatatttcatttgttagtgttttgggggcctgtagtcatgaaggtcttgttgacgaggggaagttaatattccactctatggtgagagatcatggattatatcccagcattgagcagtatgcttgtatggtggatcttcttggtcgtgctaatcggttagatgaagcagccaaggtcattgaagatatgcggattgaaccaggagctcaagtttggggtgctcttcttggatcatgtaggatacatggtaatgttgatctggcagagagagcaagcaaaaggttatttgagcttgagcctaggaatgctgggaattatgtacttctagctgatatttatgctgaggccaagatgtgggatgaggtaaaaagagtaaaaaaacttctagaagctcgggaacttcaaaaggtaccaggtcgcagttggattgaagttaataggaagatatactcattcgattctgttgacgagtttaacccacaaatggagcaacttcatgcactgctgggtgaattgtcaatagagatgaaaggacgaggatataagccacagactaaagttgtcctctatgatcttgatgaggaagagaaggaacgtatagtattaggccatagtgaaaagttagcagttgcatttggtctcatcaataccaaaaatggggaaaccattcggatttccaagaatttgaggctatgtgaagattgccattatgttacaaagttcatatccaagtttaccaatagagagattctagtccgcgatgtgaatcggtttcaccatttccgtgatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

424

Amino Acids

48.14

Weight (kDa)

7.97

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	889
AccB1I	GGYRCC	1 cut(s)	889
AccB7I	CCANNNNNTGG	2 cut(s)	559, 834
AccII	CGCG	1 cut(s)	1239
AciI	CCGC	2 cut(s)	670, 1237
AclWI	GGATC	2 cut(s)	621, 718
AcsI	RAATTY	4 cut(s)	388, 411, 441, 1162
AfaI	GTAC	3 cut(s)	254, 801, 891
AfiI	CCNNNNNNNGG	5 cut(s)	265, 559, 834, 964, 1137
AjnI	CCWGG	2 cut(s)	679, 892
AluBI	AGCT	9 cut(s)	125, 206, 215, 331, 337, 686, 772, 809, 872
AluI	AGCT	9 cut(s)	125, 206, 215, 331, 337, 686, 772, 809, 872
Alw21I	GWGCWC	2 cut(s)	688, 703
Alw26I	GTCTC	1 cut(s)	1124
AlwI	GGATC	2 cut(s)	621, 718
Ama87I	CYCGRG	1 cut(s)	873
AoxI	GGCC	6 cut(s)	113, 156, 340, 507, 825, 1087
ApeKI	GCWGC	3 cut(s)	212, 221, 647
ApoI	RAATTY	4 cut(s)	388, 411, 441, 1162
Asp700I	GAANNNNTTC	2 cut(s)	135, 1146
Asp718I	GGTACC	1 cut(s)	889
AspA2I	CCTAGG	1 cut(s)	779
AspS9I	GGNCC	3 cut(s)	157, 340, 507
AsuHPI	GGTGA	4 cut(s)	465, 574, 1001, 1247
AvaI	CYCGRG	1 cut(s)	873
AvrII	CCTAGG	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	889
BanII	GRGCYC	1 cut(s)	688
BarI	GAAGNNNNNNTAC	2 cut(s)	846, 878
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	2 cut(s)	688, 703
BbvCI	CCTCAGC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	208, 224, 659
BciT130I	CCWGG	2 cut(s)	681, 894
BciVI	GTATCC	1 cut(s)	714
BclI	TGATCA	2 cut(s)	46, 456
BcoDI	GTCTC	1 cut(s)	1124
BfaI	CTAG	6 cut(s)	33, 152, 780, 806, 866, 1232
BfmI	CTRYAG	1 cut(s)	511
BfuI	GTATCC	1 cut(s)	714
BisI	GCNGC	3 cut(s)	213, 222, 648
BlnI	CCTAGG	1 cut(s)	779
BlsI	GCNGC	3 cut(s)	214, 223, 649
Bme1390I	CCNGG	2 cut(s)	681, 894
BmeT110I	CYCGRG	1 cut(s)	873
BmgT120I	GGNCC	3 cut(s)	157, 340, 507
BmiI	GGNNCC	3 cut(s)	159, 508, 891
BmrFI	CCNGG	2 cut(s)	681, 894
BpiI	GAAGAC	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	3 cut(s)	353, 672, 794
BsaBI	GATNNNNATC	1 cut(s)	1245
BsaI	GGTCTC	1 cut(s)	1124
BsaJI	CCNNGG	4 cut(s)	186, 225, 651, 779
BsaWI	WCCGGW	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	5 cut(s)	265, 559, 834, 964, 1137
Bse8I	GATNNNNATC	1 cut(s)	1245
BseBI	CCWGG	2 cut(s)	681, 894
BseDI	CCNNGG	4 cut(s)	186, 225, 651, 779
BseGI	GGATG	3 cut(s)	255, 379, 844
BseJI	GATNNNNATC	1 cut(s)	1245
BseLI	CCNNNNNNNGG	5 cut(s)	265, 559, 834, 964, 1137
BseMII	CTCAG	2 cut(s)	251, 813
BseXI	GCAGC	3 cut(s)	208, 224, 659
BseYI	CCCAGC	4 cut(s)	337, 584, 788, 985
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	1239
BshFI	GGCC	6 cut(s)	115, 158, 342, 509, 827, 1089
BshNI	GGYRCC	1 cut(s)	889
BsiHKAI	GWGCWC	2 cut(s)	688, 703
BsiHKCI	CYCGRG	1 cut(s)	873
BsiSI	CCGG	1 cut(s)	287
BslI	CCNNNNNNNGG	5 cut(s)	265, 559, 834, 964, 1137
BsmAI	GTCTC	1 cut(s)	1124
BsmI	GAATGC	2 cut(s)	112, 790
BsnI	GGCC	6 cut(s)	115, 158, 342, 509, 827, 1089
Bso31I	GGTCTC	1 cut(s)	1124
BsoBI	CYCGRG	1 cut(s)	873
Bsp1286I	GDGCHC	2 cut(s)	688, 703
Bsp143I	GATC	7 cut(s)	46, 456, 568, 613, 710, 736, 1051
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	2 cut(s)	670, 1237
BspANI	GGCC	6 cut(s)	115, 158, 342, 509, 827, 1089
BspCNI	CTCAG	2 cut(s)	252, 814
BspFNI	CGCG	1 cut(s)	1239
BspHI	TCATGA	2 cut(s)	291, 517
BspLI	GGNNCC	3 cut(s)	159, 508, 891
BspPI	GGATC	2 cut(s)	621, 718
BspQI	GCTCTTC	1 cut(s)	708
BspT107I	GGYRCC	1 cut(s)	889
BspTNI	GGTCTC	1 cut(s)	1124
BssECI	CCNNGG	4 cut(s)	186, 225, 651, 779
BssMI	GATC	7 cut(s)	46, 456, 568, 613, 710, 736, 1051
BssT1I	CCWWGG	4 cut(s)	186, 225, 651, 779
Bst2UI	CCWGG	2 cut(s)	681, 894
Bst6I	CTCTTC	2 cut(s)	708, 1059
BstAPI	GCANNNNNTGC	2 cut(s)	107, 218
BstC8I	GCNNGC	2 cut(s)	94, 754
BstDEI	CTNAG	2 cut(s)	260, 822
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	3 cut(s)	255, 379, 844
BstFNI	CGCG	1 cut(s)	1239
BstKTI	GATC	7 cut(s)	49, 459, 571, 616, 713, 739, 1054
BstMAI	GTCTC	1 cut(s)	1124
BstMBI	GATC	7 cut(s)	46, 456, 568, 613, 710, 736, 1051
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 98, 107, 212, 218, 221, 749
BstNI	CCWGG	2 cut(s)	681, 894
BstSCI	CCNGG	2 cut(s)	679, 892
BstSFI	CTRYAG	1 cut(s)	511
BstUI	CGCG	1 cut(s)	1239
BstV1I	GCAGC	3 cut(s)	208, 224, 659
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	714
BsuRI	GGCC	6 cut(s)	115, 158, 342, 509, 827, 1089
BtgI	CCRYGG	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	1254
BtsCI	GGATG	3 cut(s)	255, 379, 844
BtsI	GCAGTG	1 cut(s)	980
BtsIMutI	CAGTG	1 cut(s)	980
Cac8I	GCNNGC	2 cut(s)	94, 754
CciI	TCATGA	2 cut(s)	291, 517
Cfr13I	GGNCC	3 cut(s)	157, 340, 507
CsiI	ACCWGGT	1 cut(s)	892
Csp6I	GTAC	3 cut(s)	253, 800, 890
CviQI	GTAC	3 cut(s)	253, 800, 890
DdeI	CTNAG	2 cut(s)	260, 822
DpnI	GATC	7 cut(s)	48, 458, 570, 615, 712, 738, 1053
DpnII	GATC	7 cut(s)	46, 456, 568, 613, 710, 736, 1051
Eam1104I	CTCTTC	2 cut(s)	708, 1059
EarI	CTCTTC	2 cut(s)	708, 1059
Ecl136II	GAGCTC	1 cut(s)	686
Eco130I	CCWWGG	4 cut(s)	186, 225, 651, 779
Eco147I	AGGCCT	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	688
Eco31I	GGTCTC	1 cut(s)	1124
Eco53kI	GAGCTC	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	873
EcoICRI	GAGCTC	1 cut(s)	686
EcoO109I	RGGNCCY	2 cut(s)	157, 507
EcoRI	GAATTC	2 cut(s)	388, 411
EcoRII	CCWGG	2 cut(s)	679, 892
EcoT14I	CCWWGG	4 cut(s)	186, 225, 651, 779
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	4 cut(s)	186, 225, 651, 779
FauNDI	CATATG	1 cut(s)	51
FbaI	TGATCA	2 cut(s)	46, 456
Fnu4HI	GCNGC	3 cut(s)	213, 222, 648
FokI	GGATG	3 cut(s)	242, 386, 851
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	3 cut(s)	213, 222, 648
FspBI	CTAG	6 cut(s)	33, 152, 780, 806, 866, 1232
GluI	GCNGC	3 cut(s)	213, 222, 648
GsaI	CCCAGC	4 cut(s)	341, 588, 792, 989
HaeIII	GGCC	6 cut(s)	115, 158, 342, 509, 827, 1089
HapII	CCGG	1 cut(s)	287
HincII	GTYRAC	2 cut(s)	532, 946
HindII	GTYRAC	2 cut(s)	532, 946
HindIII	AAGCTT	3 cut(s)	123, 204, 329
HinfI	GANTC	5 cut(s)	275, 478, 938, 1228, 1246
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	4 cut(s)	465, 574, 1001, 1247
Hpy166II	GTNNAC	3 cut(s)	532, 946, 1215
Hpy188I	TCNGA	2 cut(s)	141, 1152
Hpy188III	TCNNGA	7 cut(s)	259, 272, 292, 518, 866, 875, 1055
Hpy8I	GTNNAC	3 cut(s)	532, 946, 1215
HpyAV	CCTTC	5 cut(s)	258, 293, 364, 515, 1063
HpyCH4IV	ACGT	1 cut(s)	1075
HpyCH4V	TGCA	7 cut(s)	8, 55, 101, 110, 212, 980, 1112
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 98, 107, 212, 218, 221, 749
HpyF3I	CTNAG	2 cut(s)	260, 822
HpySE526I	ACGT	1 cut(s)	1075
KpnI	GGTACC	1 cut(s)	893
Ksp22I	TGATCA	2 cut(s)	46, 456
Kzo9I	GATC	7 cut(s)	46, 456, 568, 613, 710, 736, 1051
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	3 cut(s)	229, 683, 967
Lsp1109I	GCAGC	3 cut(s)	208, 224, 659
MabI	ACCWGGT	1 cut(s)	892
MaeI	CTAG	6 cut(s)	33, 152, 780, 806, 866, 1232
MaeII	ACGT	1 cut(s)	1075
MaeIII	GTNAC	2 cut(s)	181, 1192
MalI	GATC	7 cut(s)	48, 458, 570, 615, 712, 738, 1053
MboI	GATC	7 cut(s)	46, 456, 568, 613, 710, 736, 1051
MboII	GAAGA	9 cut(s)	154, 191, 461, 608, 674, 695, 934, 1076, 1190
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	2 cut(s)	688, 703
MluCI	AATT	9 cut(s)	175, 355, 388, 411, 435, 441, 793, 992, 1162
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	1 cut(s)	884
MnlI	CCTC	9 cut(s)	148, 423, 529, 817, 835, 1010, 1054, 1055, 1161
MroXI	GAANNNNTTC	2 cut(s)	135, 1146
MseI	TTAA	3 cut(s)	545, 915, 954
MslI	CAYNNNNRTG	3 cut(s)	420, 729, 1263
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	681, 894
Mva1269I	GAATGC	2 cut(s)	112, 790
MvaI	CCWGG	2 cut(s)	681, 894
MvnI	CGCG	1 cut(s)	1239
MwoI	GCNNNNNNNGC	7 cut(s)	89, 98, 107, 212, 218, 221, 749
NcoI	CCATGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	51
NdeII	GATC	7 cut(s)	46, 456, 568, 613, 710, 736, 1051
NlaIV	GGNNCC	3 cut(s)	159, 508, 891
NmuCI	GTSAC	1 cut(s)	181
PagI	TCATGA	2 cut(s)	291, 517
PceI	AGGCCT	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	708
PctI	GAATGC	2 cut(s)	112, 790
PdmI	GAANNNNTTC	2 cut(s)	135, 1146
PfeI	GAWTC	4 cut(s)	275, 938, 1228, 1246
PflMI	CCANNNNNTGG	2 cut(s)	559, 834
PkrI	GCNGC	3 cut(s)	214, 223, 649
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	688
Psp6I	CCWGG	2 cut(s)	679, 892
PspFI	CCCAGC	4 cut(s)	337, 584, 788, 985
PspGI	CCWGG	2 cut(s)	679, 892
PspN4I	GGNNCC	3 cut(s)	159, 508, 891
PspPI	GGNCC	3 cut(s)	157, 340, 507
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	3 cut(s)	254, 801, 891
RsaNI	GTAC	3 cut(s)	253, 800, 890
RseI	CAYNNNNRTG	3 cut(s)	420, 729, 1263
SacI	GAGCTC	1 cut(s)	688
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	545, 915, 954
SatI	GCNGC	3 cut(s)	213, 222, 648
Sau3AI	GATC	7 cut(s)	46, 456, 568, 613, 710, 736, 1051
Sau96I	GGNCC	3 cut(s)	157, 340, 507
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	2 cut(s)	681, 894
SduI	GDGCHC	2 cut(s)	688, 703
SexAI	ACCWGGT	1 cut(s)	892
SfcI	CTRYAG	1 cut(s)	511
SmiMI	CAYNNNNRTG	3 cut(s)	420, 729, 1263
SmlI	CTYRAG	3 cut(s)	332, 687, 773
SmoI	CTYRAG	3 cut(s)	332, 687, 773
Sse9I	AATT	9 cut(s)	175, 355, 388, 411, 435, 441, 793, 992, 1162
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	670, 1237
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	6 cut(s)	33, 152, 780, 806, 866, 1232
SstI	GAGCTC	1 cut(s)	688
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	679, 892
StyI	CCWWGG	4 cut(s)	186, 225, 651, 779
TaiI	ACGT	1 cut(s)	1078
TaqI	TCGA	1 cut(s)	936
TasI	AATT	9 cut(s)	175, 355, 388, 411, 435, 441, 793, 992, 1162
TatI	WGTACW	1 cut(s)	799
TfiI	GAWTC	4 cut(s)	275, 938, 1228, 1246
Tru1I	TTAA	3 cut(s)	545, 915, 954
Tru9I	TTAA	3 cut(s)	545, 915, 954
TscAI	CASTG	1 cut(s)	987
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	212, 221, 647
Tsp45I	GTSAC	1 cut(s)	181
TspGWI	ACGGA	2 cut(s)	169, 1253
TspRI	CASTG	1 cut(s)	987
Van91I	CCANNNNNTGG	2 cut(s)	559, 834
XapI	RAATTY	4 cut(s)	388, 411, 441, 1162
XbaI	TCTAGA	1 cut(s)	865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	900
XmaJI	CCTAGG	1 cut(s)	779
XmnI	GAANNNNTTC	2 cut(s)	135, 1146
XspI	CTAG	6 cut(s)	33, 152, 780, 806, 866, 1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.