Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Reverse (-)

35862203 .. 35866841

Gene Structure 4639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1305500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2724 bp

ATGGCTGCACTGGCTCACGCCCTGCTCAGCGTTCCATCCCGTTGTGGTCTTTGCCGCGCCGTTAATCCCAAGGACAATTACAAGCTCTGCGTTTGGGGGTTTTCCAGAGCAATTGCTCGCTATGGAATCTCCATTTCTAGTGTTTCCACGAGGAAGAAGGATGGTGGTAATCTCACCGGCCCTTGGGCACTGAATGCAGCTGACGCCCTCATCGTCGTCCACAATGCTACAGCTCGCACCACTGTCGAAATCCCCGTTACCTGTTATCAGCTTATTGGTGTTCCTGAACAAGCTGAAAAAGATGTGGTTGTTGAAGCAGTAATTGATTTGAAGAGTGCTAAAATTGATGAAGGTTACACCATGCATGCTATTAAATCTCGCAAGGACCTTCTAATGAACGTGAGAGAGAAGCTTATCTTTGAACCAGAATATGCTGGTAGTAAAAAGGAAAATATCCCGCCTAAATCCTCTCTTCATATCCCTTGGGCATGGCTGCCAGCTGCTCTTTGCCTCCTTCAAGAGGTTGGGGAAGTAAAGCTTGTGCAAGATATTGGTCAGGCAGCTGTTCAACATCCAGATGCTAAGCCGTATACTCACGATCTTCTTCTTTCTATGGCACTAGCTGAGTGTGCAACTGCAAAGATTGGTTTTGAGAAGACCAAGGTGTCCCAAGGATTTGAAGCTCTTGCTCGTGCTCAGTGTCTTCTAAGGAGTAAAAAATCTCTTGAGAAAATATCATTGTTATCTCAGATCGACAAAGCTAAAGCTATATGTGAGTGTCTGATTGCATCAAAAGGTTCTGATCTGAAACTTGAGGAAGCTTTTTCTCTGTTCCTTCTTGGTCAGGGTAGTGAGGCTGCAATTGTTGAGAAGCTTCAGAAGCTTGAAGTGGACAAAAATAAGTTAATACAATCTCTATGTAAACAAGGCAACCTCAAACAAGCCCTGCAGTTCCTTCCACACGAGCCTAACCCCTCCCAACAGACCTATGAGCTCTTACTACTCTCTTGCACTCACCATAAGTCTCTCTCTGATGGGCTTGACGTGCATCGTCACATTGTTGATGGTGGGTGGGACCAAGACCCTTTCCTGGCCACCAAACTCATAGAGATGTACTCAGCATTGGACTCTATTGATAATGCACGTGAAGTGTTTGATAAAACTCGTAAAAGAACTATTTATATGTGGAATGCACTCTTCAGAGCTCTTACATTGGCAGGTCATGGAACTGAGGTGCTAGATTTGTATCGACAAATGAATACAGTTGGGATTTCGTCAGATCGGTTTACATATACATATGTACTCAAAGCTTGTGTTGTTTCTGAGTGTTTGAGTTCACTCCTACAGAAGGGGAAGGAGATTCATGGACATATTTTGAAGAACGGATATGGGGCACATGTTCATGTTATGACCACTTTGTTGGATATGTATGCGAGGTTTGGGTGTGTTTTTTATGCTAGTAGTGTATTTGATCAGATGCAGATTAGAAATGTGGTTTCATGGAGTGCTATGATTGCATGCTATGCAAAGAATGGGAGGCCTTATGAAGCCTTGGAACTGTTTCGGGAAATGATACTTGATGCCCAAGATTTGTTTCCCAATCCTGTCACAATGGTTAGTGTGCTTCAAGCTTGTGCAGCTCTTACTGCTTTGGAGCAGGGGAGGTTCATTCATGGATATATCCTCAGAAGGGGTCTTGATTCAATCCTTCCAGTTATGAGTGCTCTTATCACAATGTATGCGAGATGCGGTAAGCTTGACTTGGGGGAACGAGTTTTCAGTTTGATGAATAAGAAGGATGTTGTTTCATGGAATTCCTTGATTTCTAGTTATGGCATTCATGGAAACGGAAAAAAGGCAATTCAAATTTTTGAAGACATGATCAATCATGGAGTTTCACCAAGTCGCATTTCATTCGTTAGTGTCTTGGGGGCTTGTAGTCACGCAGGTCTTGTTGAAGAGGGGAAGATATTATTTAATTCTATGGTTAAGGAACATGGATTATATCCCAGTGTTGAGCACTATGCTTGTATGGTGGATCTTCTCGGTCGTGCCAATCGGTTAGATGAAGCAGCTAAAGTAATAGATAATATGCGGATTGAGCCAGGAGCTAAAGTTTGGGGTGCTCTTCTTGGATCATGTAGAATACATTGTAACGTTGAGCTGGCAGAGAGAGCAAGCAGAAGGCTATTTGAGCTTGAGCCTAGGAATGCTGGGAACTATGTACTTCTAGCTGATATTTATGCTGAAGCCAAGTTGTGGGACGATGTAAAAAGAGTGAAGAAGCATTTAGAAGCTCGAGAACTCCAAAAGATCCCAGGTCGGAGTTGGATTGAAGTTAAAAGGAAGATATATTCATTCATTTCCGTTGATGAGTTTAACCCACAGATGGAGCAGCTCCATGCATTGTTGGCTGAATTGTCAGCAGAGATGAAGGATCAAGGATATAAGCCGCAGACCAAAGTTGTCCTCTATGATCTCGATGAGGAAGAGAAGGAACGAATAGTGTTAGGCCATAGTGAAAAGTTAGCGGTTGCATTTGGACTCATAAATACCAAAAGAGGGGAAACTATTAGGATTTCCAAGAACTTAAGGTTATGTGAAGATTGTCACTCTGTTACGAAGTTCATTTCCAAATTCGCCAATAGAGAGATTCTGGTTCGAGATGTGAATCGGTTTCACCATTTCCGTGACGGGGTTTGTTCATGTGGAGATTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

908

Amino Acids

101.49

Weight (kDa)

8.32

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm_PDR	PF25515	160 - 253	5.7e-26	Plastid division regulator ARM repeat
PPR_2	PF13041	392 - 438	1e-06	PPR repeat family
PPR_2	PF13041	496 - 546	3.2e-07	PPR repeat family
PPR	PF01535	499 - 525	1.8e-08	PPR repeat
PPR_2	PF13041	599 - 647	2e-10	PPR repeat family
PPR_3	PF13812	599 - 646	8.8e-07	Pentatricopeptide repeat domain
PPR	PF01535	602 - 632	1.3e-07	PPR repeat
E_motif	PF20431	717 - 779	1.7e-20	E motif
DYW_deaminase	PF14432	815 - 907	5.1e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	664
Acc36I	ACCTGC	2 cut(s)	1208, 1937
AccB7I	CCANNNNNTGG	1 cut(s)	2259
AccI	GTMKAC	1 cut(s)	590
AccII	CGCG	1 cut(s)	57
AciI	CCGC	6 cut(s)	55, 458, 1749, 2095, 2453, 2531
AclI	AACGTT	1 cut(s)	2157
AclWI	GGATC	4 cut(s)	2046, 2143, 2308, 2445
AcoI	YGGCCR	1 cut(s)	1092
AcsI	RAATTY	3 cut(s)	1813, 1866, 2636
AcuI	CTGAAG	3 cut(s)	860, 1183, 2268
AcvI	CACGTG	1 cut(s)	1145
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	3 cut(s)	1115, 1302, 2226
AfiI	CCNNNNNNNGG	9 cut(s)	183, 520, 1090, 1348, 1690, 2259, 2389, 2562, 2695
AflII	CTTAAG	1 cut(s)	2590
AflIII	ACRYGT	1 cut(s)	1396
AjiI	CACGTC	1 cut(s)	1045
AjnI	CCWGG	3 cut(s)	1089, 2104, 2317
AjuI	GAANNNNNNNTTGG	4 cut(s)	1578, 1610, 1894, 1926
Alw21I	GWGCWC	6 cut(s)	697, 996, 1207, 1726, 2022, 2128
Alw26I	GTCTC	1 cut(s)	1029
AlwI	GGATC	4 cut(s)	2046, 2143, 2308, 2445
Ama87I	CYCGRG	1 cut(s)	2298
AoxI	GGCC	4 cut(s)	178, 1092, 1538, 2512
ApeKI	GCWGC	9 cut(s)	5, 197, 493, 500, 560, 857, 1637, 2072, 2395
ApoI	RAATTY	3 cut(s)	1813, 1866, 2636
Asp700I	GAANNNNTTC	1 cut(s)	1560
AspA2I	CCTAGG	1 cut(s)	2204
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	3 cut(s)	179, 385, 1075
AsuHPI	GGTGA	4 cut(s)	166, 1007, 1890, 2672
AvaI	CYCGRG	1 cut(s)	2298
AvaII	GGWCC	2 cut(s)	385, 1075
AvrII	CCTAGG	1 cut(s)	2204
BaeGI	GKGCMC	2 cut(s)	190, 1396
BalI	TGGCCA	1 cut(s)	1094
BanII	GRGCYC	2 cut(s)	996, 1207
BauI	CACGAG	3 cut(s)	148, 690, 962
BbrPI	CACGTG	1 cut(s)	1145
BbsI	GAAGAC	3 cut(s)	662, 695, 1881
Bbv12I	GWGCWC	6 cut(s)	697, 996, 1207, 1726, 2022, 2128
BbvI	GCAGC	8 cut(s)	209, 480, 487, 572, 844, 1649, 2084, 2407
BccI	CCATC	5 cut(s)	43, 155, 1028, 1058, 2383
BceAI	ACGGC	2 cut(s)	44, 571
BcgI	CGANNNNNNTGC	4 cut(s)	226, 260, 1897, 1931
BciT130I	CCWGG	3 cut(s)	1091, 2106, 2319
BclI	TGATCA	2 cut(s)	1471, 1881
BcoDI	GTCTC	1 cut(s)	1029
BfaI	CTAG	7 cut(s)	138, 620, 1238, 1458, 1827, 2205, 2231
BfmI	CTRYAG	3 cut(s)	228, 947, 1343
BfrI	CTTAAG	1 cut(s)	2590
BfuAI	ACCTGC	2 cut(s)	1208, 1937
BlnI	CCTAGG	1 cut(s)	2204
BlpI	GCTNAGC	2 cut(s)	26, 582
Bme1390I	CCNGG	3 cut(s)	1091, 2106, 2319
Bme18I	GGWCC	2 cut(s)	385, 1075
BmeT110I	CYCGRG	1 cut(s)	2298
BmgBI	CACGTC	1 cut(s)	1045
BmgT120I	GGNCC	3 cut(s)	179, 385, 1075
BmiI	GGNNCC	1 cut(s)	1076
BmrFI	CCNGG	3 cut(s)	1091, 2106, 2319
BmrI	ACTGGG	1 cut(s)	2004
BmsI	GCATC	6 cut(s)	568, 797, 1057, 1467, 1570, 1736
BmuI	ACTGGG	1 cut(s)	2004
BpiI	GAAGAC	3 cut(s)	662, 695, 1881
BplI	GAGNNNNNCTC	2 cut(s)	1100, 1132
Bpu1102I	GCTNAGC	2 cut(s)	26, 582
BpuEI	CTTGAG	3 cut(s)	746, 833, 2219
BsaAI	YACGTR	1 cut(s)	1145
BsaBI	GATNNNNATC	2 cut(s)	1245, 2670
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	8 cut(s)	69, 182, 482, 660, 670, 1551, 2204, 2317
BsaXI	ACNNNNNCTCC	2 cut(s)	2100, 2130
Bsc4I	CCNNNNNNNGG	9 cut(s)	183, 520, 1090, 1348, 1690, 2259, 2389, 2562, 2695
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	3 cut(s)	15, 1712, 2010
Bse8I	GATNNNNATC	2 cut(s)	1245, 2670
BseBI	CCWGG	3 cut(s)	1091, 2106, 2319
BseDI	CCNNGG	8 cut(s)	69, 182, 482, 660, 670, 1551, 2204, 2317
BseGI	GGATG	4 cut(s)	35, 166, 571, 1804
BseJI	GATNNNNATC	2 cut(s)	1245, 2670
BseLI	CCNNNNNNNGG	9 cut(s)	183, 520, 1090, 1348, 1690, 2259, 2389, 2562, 2695
BseMII	CTCAG	8 cut(s)	40, 615, 710, 761, 1131, 1221, 1314, 1699
BseNI	ACTGG	3 cut(s)	15, 1712, 2010
BseSI	GKGCMC	2 cut(s)	190, 1396
BseXI	GCAGC	8 cut(s)	209, 480, 487, 572, 844, 1649, 2084, 2407
BseYI	CCCAGC	1 cut(s)	2213
BsgI	GTGCAG	1 cut(s)	1656
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	2050
BshFI	GGCC	4 cut(s)	180, 1094, 1540, 2514
BsiEI	CGRYCG	1 cut(s)	2050
BsiHKAI	GWGCWC	6 cut(s)	697, 996, 1207, 1726, 2022, 2128
BsiHKCI	CYCGRG	1 cut(s)	2298
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	3 cut(s)	652, 1088, 2276
BslI	CCNNNNNNNGG	9 cut(s)	183, 520, 1090, 1348, 1690, 2259, 2389, 2562, 2695
BsmAI	GTCTC	1 cut(s)	1029
BsmFI	GGGAC	3 cut(s)	652, 1088, 2276
BsmI	GAATGC	4 cut(s)	199, 1195, 1836, 2215
BsnI	GGCC	4 cut(s)	180, 1094, 1540, 2514
BsoBI	CYCGRG	1 cut(s)	2298
Bsp1286I	GDGCHC	8 cut(s)	190, 697, 996, 1207, 1396, 1726, 2022, 2128
Bsp1720I	GCTNAGC	2 cut(s)	26, 582
BspACI	CCGC	6 cut(s)	55, 458, 1749, 2095, 2453, 2531
BspANI	GGCC	4 cut(s)	180, 1094, 1540, 2514
BspCNI	CTCAG	8 cut(s)	39, 616, 709, 760, 1130, 1222, 1315, 1698
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	1076
BspMAI	CTGCAG	1 cut(s)	951
BspMI	ACCTGC	2 cut(s)	1208, 1937
BspPI	GGATC	4 cut(s)	2046, 2143, 2308, 2445
BspQI	GCTCTTC	1 cut(s)	2133
BspTI	CTTAAG	1 cut(s)	2590
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	15, 1712, 2010
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	8 cut(s)	69, 182, 482, 660, 670, 1551, 2204, 2317
BssNAI	GTATAC	1 cut(s)	591
BssNI	GRCGYC	1 cut(s)	204
BssSI	CACGAG	3 cut(s)	148, 690, 962
BssT1I	CCWWGG	7 cut(s)	69, 182, 482, 660, 670, 1551, 2204
Bst1107I	GTATAC	1 cut(s)	591
Bst2BI	CACGAG	3 cut(s)	148, 690, 962
Bst2UI	CCWGG	3 cut(s)	1091, 2106, 2319
Bst4CI	ACNGT	3 cut(s)	244, 1264, 1560
Bst6I	CTCTTC	6 cut(s)	326, 477, 1202, 1953, 2133, 2484
BstACI	GRCGYC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	2590
BstAPI	GCANNNNNTGC	2 cut(s)	194, 1523
BstBAI	YACGTR	1 cut(s)	1145
BstC8I	GCNNGC	7 cut(s)	118, 235, 366, 498, 1519, 2166, 2179
BstENI	CCTNNNNNAGG	2 cut(s)	518, 1346
BstF5I	GGATG	4 cut(s)	35, 166, 571, 1804
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	1029
BstMCI	CGRYCG	1 cut(s)	2050
BstNI	CCWGG	3 cut(s)	1091, 2106, 2319
BstNSI	RCATGY	3 cut(s)	368, 1400, 1521
BstSCI	CCNGG	3 cut(s)	1089, 2104, 2317
BstSFI	CTRYAG	3 cut(s)	228, 947, 1343
BstSLI	GKGCMC	2 cut(s)	190, 1396
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	8 cut(s)	209, 480, 487, 572, 844, 1649, 2084, 2407
BstV2I	GAAGAC	3 cut(s)	662, 695, 1881
BstX2I	RGATCY	2 cut(s)	2038, 2313
BstXI	CCANNNNNNTGG	1 cut(s)	1420
BstYI	RGATCY	2 cut(s)	2038, 2313
BstZ17I	GTATAC	1 cut(s)	591
BsuRI	GGCC	4 cut(s)	180, 1094, 1540, 2514
BtrI	CACGTC	1 cut(s)	1045
BtsCI	GGATG	4 cut(s)	35, 166, 571, 1804
BtsIMutI	CAGTG	5 cut(s)	8, 188, 240, 704, 2017
BveI	ACCTGC	2 cut(s)	1208, 1937
Cac8I	GCNNGC	7 cut(s)	118, 235, 366, 498, 1519, 2166, 2179
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	179, 385, 1075
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	3 cut(s)	1114, 1301, 2225
CviQI	GTAC	3 cut(s)	1114, 1301, 2225
DrdI	GACNNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	1092
Eam1104I	CTCTTC	6 cut(s)	326, 477, 1202, 1953, 2133, 2484
EarI	CTCTTC	6 cut(s)	326, 477, 1202, 1953, 2133, 2484
Ecl136II	GAGCTC	2 cut(s)	994, 1205
Eco130I	CCWWGG	7 cut(s)	69, 182, 482, 660, 670, 1551, 2204
Eco147I	AGGCCT	1 cut(s)	1540
Eco24I	GRGCYC	2 cut(s)	996, 1207
Eco47I	GGWCC	2 cut(s)	385, 1075
Eco53kI	GAGCTC	2 cut(s)	994, 1205
Eco57I	CTGAAG	3 cut(s)	860, 1183, 2268
Eco72I	CACGTG	1 cut(s)	1145
Eco88I	CYCGRG	1 cut(s)	2298
EcoICRI	GAGCTC	2 cut(s)	994, 1205
EcoNI	CCTNNNNNAGG	2 cut(s)	518, 1346
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	1813
EcoRII	CCWGG	3 cut(s)	1089, 2104, 2317
EcoT14I	CCWWGG	7 cut(s)	69, 182, 482, 660, 670, 1551, 2204
EcoT22I	ATGCAT	2 cut(s)	366, 2407
EcoT38I	GRGCYC	2 cut(s)	996, 1207
ErhI	CCWWGG	7 cut(s)	69, 182, 482, 660, 670, 1551, 2204
FalI	AAGNNNNNCTT	6 cut(s)	401, 433, 522, 554, 1745, 1777
FaqI	GGGAC	3 cut(s)	652, 1088, 2276
FauI	CCCGC	1 cut(s)	465
FauNDI	CATATG	1 cut(s)	1297
FbaI	TGATCA	2 cut(s)	1471, 1881
FblI	GTMKAC	1 cut(s)	590
FokI	GGATG	4 cut(s)	22, 173, 558, 1811
FriOI	GRGCYC	2 cut(s)	996, 1207
FspBI	CTAG	7 cut(s)	138, 620, 1238, 1458, 1827, 2205, 2231
GlaI	GCGC	1 cut(s)	58
GsaI	CCCAGC	1 cut(s)	2217
HaeIII	GGCC	4 cut(s)	180, 1094, 1540, 2514
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	8 cut(s)	410, 536, 819, 872, 881, 1308, 1629, 1754
HinfI	GANTC	7 cut(s)	126, 1127, 1360, 1700, 2544, 2653, 2671
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	4 cut(s)	166, 1007, 1890, 2672
Hpy166II	GTNNAC	6 cut(s)	220, 591, 892, 923, 1287, 1337
Hpy8I	GTNNAC	6 cut(s)	220, 591, 892, 923, 1287, 1337
Hpy99I	CGWCG	1 cut(s)	218
HpyCH4III	ACNGT	3 cut(s)	244, 1264, 1560
HpyCH4IV	ACGT	4 cut(s)	399, 1044, 1144, 2157
HpySE526I	ACGT	4 cut(s)	399, 1044, 1144, 2157
Hsp92I	GRCGYC	1 cut(s)	204
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	2 cut(s)	1471, 1881
LguI	GCTCTTC	1 cut(s)	2133
LmnI	GCTCC	4 cut(s)	1654, 2108, 2392, 2403
Lsp1109I	GCAGC	8 cut(s)	209, 480, 487, 572, 844, 1649, 2084, 2407
LweI	GCATC	6 cut(s)	568, 797, 1057, 1467, 1570, 1736
MaeI	CTAG	7 cut(s)	138, 620, 1238, 1458, 1827, 2205, 2231
MaeII	ACGT	4 cut(s)	399, 1044, 1144, 2157
MaeIII	GTNAC	9 cut(s)	256, 353, 1052, 1606, 1940, 2153, 2609, 2617, 2690
MfeI	CAATTG	2 cut(s)	111, 861
MflI	RGATCY	2 cut(s)	2038, 2313
MhlI	GDGCHC	8 cut(s)	190, 697, 996, 1207, 1396, 1726, 2022, 2128
MlsI	TGGCCA	1 cut(s)	1094
MluNI	TGGCCA	1 cut(s)	1094
MlyI	GAGTC	2 cut(s)	1121, 2538
MmeI	TCCRAC	3 cut(s)	1401, 2303, 2309
Mox20I	TGGCCA	1 cut(s)	1094
Mph1103I	ATGCAT	2 cut(s)	366, 2407
MroXI	GAANNNNTTC	1 cut(s)	1560
MscI	TGGCCA	1 cut(s)	1094
MseI	TTAA	8 cut(s)	63, 372, 905, 1977, 1989, 2340, 2379, 2591
MslI	CAYNNNNRTG	4 cut(s)	576, 1109, 1401, 2688
Msp20I	TGGCCA	1 cut(s)	1094
MspA1I	CMGCKG	3 cut(s)	200, 500, 563
MspCI	CTTAAG	1 cut(s)	2590
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	1091, 2106, 2319
MunI	CAATTG	2 cut(s)	111, 861
Mva1269I	GAATGC	4 cut(s)	199, 1195, 1836, 2215
MvaI	CCWGG	3 cut(s)	1091, 2106, 2319
MvnI	CGCG	1 cut(s)	57
NdeI	CATATG	1 cut(s)	1297
NlaIV	GGNNCC	1 cut(s)	1076
NmuCI	GTSAC	5 cut(s)	1052, 1606, 1940, 2609, 2690
NsiI	ATGCAT	2 cut(s)	366, 2407
NspI	RCATGY	3 cut(s)	368, 1400, 1521
PaeI	GCATGC	2 cut(s)	368, 1521
PaeR7I	CTCGAG	1 cut(s)	2298
PceI	AGGCCT	1 cut(s)	1540
PciI	ACATGT	1 cut(s)	1396
PciSI	GCTCTTC	1 cut(s)	2133
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 252
PctI	GAATGC	4 cut(s)	199, 1195, 1836, 2215
PdmI	GAANNNNTTC	1 cut(s)	1560
PfeI	GAWTC	5 cut(s)	126, 1360, 1700, 2653, 2671
PflMI	CCANNNNNTGG	1 cut(s)	2259
PleI	GAGTC	2 cut(s)	1121, 2538
PmaCI	CACGTG	1 cut(s)	1145
PmlI	CACGTG	1 cut(s)	1145
PpsI	GAGTC	2 cut(s)	1121, 2538
Ppu21I	YACGTR	1 cut(s)	1145
PpuMI	RGGWCCY	1 cut(s)	385
PscI	ACATGT	1 cut(s)	1396
Psp124BI	GAGCTC	2 cut(s)	996, 1207
Psp1406I	AACGTT	1 cut(s)	2157
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	3 cut(s)	1089, 2104, 2317
PspCI	CACGTG	1 cut(s)	1145
PspFI	CCCAGC	1 cut(s)	2213
PspGI	CCWGG	3 cut(s)	1089, 2104, 2317
PspN4I	GGNNCC	1 cut(s)	1076
PspPI	GGNCC	3 cut(s)	179, 385, 1075
PspPPI	RGGWCCY	1 cut(s)	385
PstI	CTGCAG	1 cut(s)	951
PsuI	RGATCY	2 cut(s)	2038, 2313
PvuII	CAGCTG	3 cut(s)	200, 500, 563
RsaI	GTAC	3 cut(s)	1115, 1302, 2226
RsaNI	GTAC	3 cut(s)	1114, 1301, 2225
RseI	CAYNNNNRTG	4 cut(s)	576, 1109, 1401, 2688
SacI	GAGCTC	2 cut(s)	996, 1207
SapI	GCTCTTC	1 cut(s)	2133
SaqAI	TTAA	8 cut(s)	63, 372, 905, 1977, 1989, 2340, 2379, 2591
Sau96I	GGNCC	3 cut(s)	179, 385, 1075
SchI	GAGTC	2 cut(s)	1121, 2538
ScrFI	CCNGG	3 cut(s)	1091, 2106, 2319
SduI	GDGCHC	8 cut(s)	190, 697, 996, 1207, 1396, 1726, 2022, 2128
SfaNI	GCATC	6 cut(s)	568, 797, 1057, 1467, 1570, 1736
SfcI	CTRYAG	3 cut(s)	228, 947, 1343
Sfr274I	CTCGAG	1 cut(s)	2298
SinI	GGWCC	2 cut(s)	385, 1075
SlaI	CTCGAG	1 cut(s)	2298
SmiMI	CAYNNNNRTG	4 cut(s)	576, 1109, 1401, 2688
SmlI	CTYRAG	5 cut(s)	725, 812, 2198, 2298, 2590
SmoI	CTYRAG	5 cut(s)	725, 812, 2198, 2298, 2590
SphI	GCATGC	2 cut(s)	368, 1521
SseBI	AGGCCT	1 cut(s)	1540
SsiI	CCGC	6 cut(s)	55, 458, 1749, 2095, 2453, 2531
SspMI	CTAG	7 cut(s)	138, 620, 1238, 1458, 1827, 2205, 2231
SstI	GAGCTC	2 cut(s)	996, 1207
StuI	AGGCCT	1 cut(s)	1540
StyD4I	CCNGG	3 cut(s)	1089, 2104, 2317
StyI	CCWWGG	7 cut(s)	69, 182, 482, 660, 670, 1551, 2204
TaaI	ACNGT	3 cut(s)	244, 1264, 1560
TaiI	ACGT	4 cut(s)	402, 1047, 1147, 2160
TaqI	TCGA	6 cut(s)	246, 753, 1249, 2299, 2481, 2662
TaqII	GACCGA	1 cut(s)	2036
TatI	WGTACW	3 cut(s)	1113, 1300, 2224
TauI	GCSGC	2 cut(s)	57, 2455
TfiI	GAWTC	5 cut(s)	126, 1360, 1700, 2653, 2671
Tru1I	TTAA	8 cut(s)	63, 372, 905, 1977, 1989, 2340, 2379, 2591
Tru9I	TTAA	8 cut(s)	63, 372, 905, 1977, 1989, 2340, 2379, 2591
TscAI	CASTG	5 cut(s)	15, 195, 247, 704, 2017
TseFI	GTSAC	5 cut(s)	1052, 1606, 1940, 2609, 2690
TseI	GCWGC	9 cut(s)	5, 197, 493, 500, 560, 857, 1637, 2072, 2395
Tsp45I	GTSAC	5 cut(s)	1052, 1606, 1940, 2609, 2690
TspGWI	ACGGA	4 cut(s)	1398, 1863, 2356, 2678
TspRI	CASTG	5 cut(s)	15, 195, 247, 704, 2017
Van91I	CCANNNNNTGG	1 cut(s)	2259
Vha464I	CTTAAG	1 cut(s)	2590
VpaK11BI	GGWCC	2 cut(s)	385, 1075
XagI	CCTNNNNNAGG	2 cut(s)	518, 1346
XapI	RAATTY	3 cut(s)	1813, 1866, 2636
XceI	RCATGY	3 cut(s)	368, 1400, 1521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2325
XhoI	CTCGAG	1 cut(s)	2298
XmaJI	CCTAGG	1 cut(s)	2204
XmiI	GTMKAC	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	1560
XspI	CTAG	7 cut(s)	138, 620, 1238, 1458, 1827, 2205, 2231
Zsp2I	ATGCAT	2 cut(s)	366, 2407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.