Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Reverse (-)

40545698 .. 40549630

Gene Structure 3933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029567

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGGCTGCTCTGGCTCACGCCCTGCTCGGAATCATCCCAGCTCGGTGTGGTCTCTGCCGAGCCATCAATCCCAACCTCTGCTGCTCTTGGCGCCCTTCACCTAATCCCTCTGGATTCTTTTCCAGTAGGACCCACCTTGCTAATCTCACCGCCCGGTCCAGACTCAACGCCGCCCACACCCTCACCGTCCACAATGCTTCGGCTCCCTCCACTCTTGAAATCCCCGTCACCTGTTACCAGCTTATTGGCGTTCCTGATCAAGCTGAGAAAGATGAGGTTATTAAAGCAGTAATGGATTTGAAGAATTCTCAAGTTGAAGATGGTTATACTGAGAATGCTATTAAATCTCGGCAGGATCTCTTAATGGATGTGAGAGATAAGGTTATTTTTGAACCAGAATATGCTGGTAATAGTCATGAAAATATCCGACCTAAATCTGCTCTTCAAATCCCTTGGGCATGGTTGGCAGCTGCTCTTTGCCTCCTTCAAGAGGGAAGTACAGCTATTAAGCATCCAGATGCTAAGCCATATATTCATGATATTCTTCTCTCTATGGCACTGGCTGAGTGTGCAACTGCAATGATTGGTTTTGAGAGCAACAAAGTGTCCCAGGGATTTGAAGCTATTGCTCGTGCTCAGAGTCTTCTAAGAAGTAAAAAATCTCTTGAGAAAATATCATTATTATCTAAGATTGACAGAGCGAAAACTATGTGTGAGTGTCTGATTGCATCAGAGCTTACTGATCTGAAACTAGAGGAAGCTCTTACGCTGTTTCTTCTCGGTCAGGATAATGAGGCTGCAGTTGTTGAAAAGCTGAAGAAGCTTGATGGAAGCAAAAACCAATTAATACAGTCTTTATGCAAACAAGGCGACCTCAAGCTAGCTCTACAACTTTTTCCTCACGAACCCAACCCCTCCCAACAGACCTGTGAGCTCTTAATCCTTTCTTGCATCCGCCAGGATTCTCTCTCTGATGGGTTAGACATGCATCGCCACCTTGTTGATGGCGGGTGGGACCAAGACCCTTTTTTGGCCACCAAACTTATAGAGATGTACTCTGAGTTGGACTCCATCGAGAATGCACGTGAAGTATTCGATAAAACTCGTAAAAGAACTATTTATATGTGGAATGCACTTTTTAGAGCCCTTACGTTGGCTGGCCATGGAACTGAGGTGCTAAATTTGTACAGACAAATGAATACAATTGGGGTTTCGTCTGATCGGTTTACGTATACGTATGTACTCAAAGCTTGTGTTGTTTCAGAGATTTTGAGTTTGCTTCTCCAGAAGGGAAAGGAGATTCATGGGCATATTTTGCGTCACGGATATGGGGCCCATGTCCATGTAACGACCACTTTGTTGGATATGTATGCAAGGTTCGGGTGCGTTTCATGTGCTAGTAGTGTATTTGATCAGATGCAAAATAGAATTGTGGTTTCTTGGAGTGCTATGATTGGTTGCTATGCAAAGAATGCAAGGCCTTGTGAAGCTTTGGAACTTTTTCGGAAGATGATACTAGAGGCCCCTGATTTGTTTCCCAACTCCGTGACCATGGTTAGTGTTCTTCAAGCTTGTGCAGCTCTTGCTGCCTTGGAGCAGGGGAAGTTCATTCATGGGTACATCCTGAGAAGGGGTCTTGATTCAACCCTTCCGGTTATGAGTAGCCTTATCACAATGTATGCGAGATGTGGTAAGCTTGAGCTGGGCCAACAAGTTTTCAATATGATAAAAAAGAAGGATGTGGTATCATGGAATTCCTTGATTTCAAGTTATGGAATTCATGGATATGGAAAGAGGGCAATTCAAATTTTTGAAGACATGATCAATCATGGAGTATCACCGAGTCATATTTCATTTGTTAGTGTTTTGGGGGCCTGTAGTCATGAAGGTCTTGTTGACGAGGGGAAGTTAATATTCCAGTCTATGGTGAGAGATCATGGATTATATCCCAGCATTGAGCAGTATGCTTGTATGGTGGATCTTCTTGGTCGTGCTAATCGGTTAGATGAAGCAGCCAAGGTCATTGAAGATATGCGGATTGAACCAGGAGCTCAAGTTTGGGGTGCTCTTCTTGGATCATGTAGGATACATGAGATGAAAGGACGAGGATATAAGCCACATACTAAAGTTGTCCTCTATGATCTTGATGAGGAAGAGAAGGAACGTATAGTATTAGGCCATAGTGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

731

Amino Acids

81.15

Weight (kDa)

6.69

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm_PDR	PF25515	149 - 232	4.9e-14	Plastid division regulator ARM repeat
PPR_2	PF13041	372 - 418	3.8e-06	PPR repeat family
PPR_2	PF13041	579 - 627	9.2e-10	PPR repeat family
PPR	PF01535	582 - 612	7.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	90
AccB7I	CCANNNNNTGG	1 cut(s)	1924
AccI	GTMKAC	1 cut(s)	1232
AciI	CCGC	5 cut(s)	150, 171, 955, 1008, 2035
AclWI	GGATC	3 cut(s)	363, 1986, 2083
AcoI	YGGCCR	2 cut(s)	1032, 1159
AcsI	RAATTY	5 cut(s)	304, 1180, 1753, 1776, 1806
AcuI	CTGAAG	1 cut(s)	836
AcvI	CACGTG	1 cut(s)	1085
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	5 cut(s)	499, 1055, 1187, 1242, 1619
AfiI	CCNNNNNNNGG	5 cut(s)	490, 1030, 1153, 1630, 1924
AjnI	CCWGG	3 cut(s)	609, 957, 2044
Alw21I	GWGCWC	4 cut(s)	637, 936, 2053, 2068
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	3 cut(s)	363, 1986, 2083
AoxI	GGCC	8 cut(s)	1032, 1159, 1332, 1478, 1521, 1705, 1872, 2176
ApaI	GGGCCC	1 cut(s)	1336
ApeKI	GCWGC	8 cut(s)	5, 81, 467, 470, 797, 1577, 1586, 2012
ApoI	RAATTY	5 cut(s)	304, 1180, 1753, 1776, 1806
AseI	ATTAAT	1 cut(s)	845
Asp700I	GAANNNNTTC	1 cut(s)	1500
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	8 cut(s)	129, 156, 1015, 1332, 1333, 1522, 1705, 1872
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	6 cut(s)	90, 139, 175, 220, 1830, 1939
AsuNHI	GCTAGC	1 cut(s)	880
AvaII	GGWCC	3 cut(s)	129, 156, 1015
BaeGI	GKGCMC	1 cut(s)	1336
BalI	TGGCCA	2 cut(s)	1034, 1161
BanI	GGYRCC	1 cut(s)	90
BanII	GRGCYC	4 cut(s)	936, 1147, 1336, 2053
BauI	CACGAG	1 cut(s)	630
BbrPI	CACGTG	1 cut(s)	1085
BbsI	GAAGAC	2 cut(s)	635, 1821
Bbv12I	GWGCWC	4 cut(s)	637, 936, 2053, 2068
BbvI	GCAGC	7 cut(s)	68, 457, 479, 784, 1573, 1589, 2024
BccI	CCATC	6 cut(s)	71, 314, 821, 968, 998, 1079
BciT130I	CCWGG	3 cut(s)	611, 959, 2046
BciVI	GTATCC	1 cut(s)	2079
BclI	TGATCA	3 cut(s)	256, 1411, 1821
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	4 cut(s)	752, 881, 1398, 1517
BfmI	CTRYAG	2 cut(s)	798, 1876
BfoI	RGCGCY	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	2079
BisI	GCNGC	9 cut(s)	6, 82, 171, 468, 471, 798, 1578, 1587, 2013
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	9 cut(s)	7, 83, 172, 469, 472, 799, 1579, 1588, 2014
Bme1390I	CCNGG	4 cut(s)	154, 611, 959, 2046
Bme18I	GGWCC	3 cut(s)	129, 156, 1015
BmgT120I	GGNCC	8 cut(s)	129, 156, 1015, 1332, 1333, 1522, 1705, 1872
BmiI	GGNNCC	8 cut(s)	92, 131, 204, 1016, 1333, 1334, 1524, 1873
BmrFI	CCNGG	4 cut(s)	154, 611, 959, 2046
BmsI	GCATC	6 cut(s)	508, 520, 737, 960, 997, 1407
BmtI	GCTAGC	1 cut(s)	884
BpiI	GAAGAC	2 cut(s)	635, 1821
BplI	GAGNNNNNCTC	4 cut(s)	1040, 1072, 1052, 1084
BpmI	CTGGAG	1 cut(s)	1268
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	5 cut(s)	294, 686, 860, 1718, 2037
BpuMI	CCSGG	1 cut(s)	154
BsaAI	YACGTR	3 cut(s)	1085, 1230, 1236
BsaHI	GRCGYC	1 cut(s)	91
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	7 cut(s)	452, 609, 610, 1162, 1551, 1590, 2016
BsaWI	WCCGGW	1 cut(s)	1651
BsaXI	ACNNNNNCTCC	2 cut(s)	2040, 2070
Bsc4I	CCNNNNNNNGG	5 cut(s)	490, 1030, 1153, 1630, 1924
Bse1I	ACTGG	3 cut(s)	123, 564, 1918
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	3 cut(s)	611, 959, 2046
BseDI	CCNNGG	7 cut(s)	452, 609, 610, 1162, 1551, 1590, 2016
BseGI	GGATG	6 cut(s)	33, 373, 511, 951, 1620, 1744
BseLI	CCNNNNNNNGG	5 cut(s)	490, 1030, 1153, 1630, 1924
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	7 cut(s)	255, 321, 555, 650, 1050, 1161, 1616
BseNI	ACTGG	3 cut(s)	123, 564, 1918
BseSI	GKGCMC	1 cut(s)	1336
BseXI	GCAGC	7 cut(s)	68, 457, 479, 784, 1573, 1589, 2024
BseYI	CCCAGC	3 cut(s)	37, 1702, 1949
BsgI	GTGCAG	1 cut(s)	1596
BshFI	GGCC	8 cut(s)	1034, 1161, 1334, 1480, 1523, 1707, 1874, 2178
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	4 cut(s)	637, 936, 2053, 2068
BsiSI	CCGG	2 cut(s)	154, 1652
BslFI	GGGAC	2 cut(s)	592, 1028
BslI	CCNNNNNNNGG	5 cut(s)	490, 1030, 1153, 1630, 1924
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	592, 1028
BsmI	GAATGC	4 cut(s)	340, 1084, 1135, 1477
BsnI	GGCC	8 cut(s)	1034, 1161, 1334, 1480, 1523, 1707, 1874, 2178
Bso31I	GGTCTC	1 cut(s)	56
Bsp120I	GGGCCC	1 cut(s)	1332
Bsp1286I	GDGCHC	6 cut(s)	637, 936, 1147, 1336, 2053, 2068
Bsp1407I	TGTACA	1 cut(s)	1185
Bsp1720I	GCTNAGC	1 cut(s)	522
Bsp19I	CCATGG	2 cut(s)	1162, 1551
BspACI	CCGC	5 cut(s)	150, 171, 955, 1008, 2035
BspANI	GGCC	8 cut(s)	1034, 1161, 1334, 1480, 1523, 1707, 1874, 2178
BspCNI	CTCAG	7 cut(s)	256, 322, 556, 649, 1051, 1162, 1617
BspHI	TCATGA	3 cut(s)	415, 535, 1882
BspLI	GGNNCC	8 cut(s)	92, 131, 204, 1016, 1333, 1334, 1524, 1873
BspMAI	CTGCAG	1 cut(s)	802
BspOI	GCTAGC	1 cut(s)	884
BspPI	GGATC	3 cut(s)	363, 1986, 2083
BspQI	GCTCTTC	2 cut(s)	447, 2073
BspT107I	GGYRCC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	1185
BsrI	ACTGG	3 cut(s)	123, 564, 1918
BssECI	CCNNGG	7 cut(s)	452, 609, 610, 1162, 1551, 1590, 2016
BssNAI	GTATAC	1 cut(s)	1233
BssNI	GRCGYC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	5 cut(s)	452, 1162, 1551, 1590, 2016
Bst1107I	GTATAC	1 cut(s)	1233
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	3 cut(s)	611, 959, 2046
Bst4CI	ACNGT	2 cut(s)	187, 852
Bst6I	CTCTTC	3 cut(s)	447, 2073, 2148
BstACI	GRCGYC	1 cut(s)	91
BstAPI	GCANNNNNTGC	3 cut(s)	1315, 1472, 1583
BstAUI	TGTACA	1 cut(s)	1185
BstBAI	YACGTR	3 cut(s)	1085, 1230, 1236
BstC8I	GCNNGC	2 cut(s)	882, 1159
BstDSI	CCRYGG	2 cut(s)	1162, 1551
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstF5I	GGATG	6 cut(s)	33, 373, 511, 951, 1620, 1744
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	56
BstNI	CCWGG	3 cut(s)	611, 959, 2046
BstNSI	RCATGY	1 cut(s)	988
BstSCI	CCNGG	4 cut(s)	152, 609, 957, 2044
BstSFI	CTRYAG	2 cut(s)	798, 1876
BstSLI	GKGCMC	1 cut(s)	1336
BstSNI	TACGTA	2 cut(s)	1230, 1236
BstV1I	GCAGC	7 cut(s)	68, 457, 479, 784, 1573, 1589, 2024
BstV2I	GAAGAC	2 cut(s)	635, 1821
BstX2I	RGATCY	2 cut(s)	355, 1978
BstXI	CCANNNNNNTGG	2 cut(s)	245, 1360
BstYI	RGATCY	2 cut(s)	355, 1978
BstZ17I	GTATAC	1 cut(s)	1233
BsuI	GTATCC	1 cut(s)	2079
BsuRI	GGCC	8 cut(s)	1034, 1161, 1334, 1480, 1523, 1707, 1874, 2178
BtgI	CCRYGG	2 cut(s)	1162, 1551
BtgZI	GCGATG	1 cut(s)	974
BtsCI	GGATG	6 cut(s)	33, 373, 511, 951, 1620, 1744
BtsIMutI	CAGTG	1 cut(s)	557
Cac8I	GCNNGC	2 cut(s)	882, 1159
CciI	TCATGA	3 cut(s)	415, 535, 1882
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	8 cut(s)	129, 156, 1015, 1332, 1333, 1522, 1705, 1872
CseI	GACGC	1 cut(s)	1307
Csp6I	GTAC	5 cut(s)	498, 1054, 1186, 1241, 1618
CviQI	GTAC	5 cut(s)	498, 1054, 1186, 1241, 1618
DinI	GGCGCC	1 cut(s)	92
EaeI	YGGCCR	2 cut(s)	1032, 1159
Eam1104I	CTCTTC	3 cut(s)	447, 2073, 2148
EarI	CTCTTC	3 cut(s)	447, 2073, 2148
EciI	GGCGGA	1 cut(s)	944
Ecl136II	GAGCTC	2 cut(s)	934, 2051
Eco105I	TACGTA	2 cut(s)	1230, 1236
Eco130I	CCWWGG	5 cut(s)	452, 1162, 1551, 1590, 2016
Eco147I	AGGCCT	1 cut(s)	1480
Eco24I	GRGCYC	4 cut(s)	936, 1147, 1336, 2053
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	3 cut(s)	129, 156, 1015
Eco53kI	GAGCTC	2 cut(s)	934, 2051
Eco57I	CTGAAG	1 cut(s)	836
Eco72I	CACGTG	1 cut(s)	1085
EcoICRI	GAGCTC	2 cut(s)	934, 2051
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoO109I	RGGNCCY	4 cut(s)	129, 1332, 1522, 1872
EcoRI	GAATTC	3 cut(s)	304, 1753, 1776
EcoRII	CCWGG	3 cut(s)	609, 957, 2044
EcoT14I	CCWWGG	5 cut(s)	452, 1162, 1551, 1590, 2016
EcoT22I	ATGCAT	1 cut(s)	990
EcoT38I	GRGCYC	4 cut(s)	936, 1147, 1336, 2053
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
ErhI	CCWWGG	5 cut(s)	452, 1162, 1551, 1590, 2016
FaqI	GGGAC	2 cut(s)	592, 1028
FauI	CCCGC	1 cut(s)	1001
FbaI	TGATCA	3 cut(s)	256, 1411, 1821
FblI	GTMKAC	1 cut(s)	1232
Fnu4HI	GCNGC	9 cut(s)	6, 82, 171, 468, 471, 798, 1578, 1587, 2013
FokI	GGATG	6 cut(s)	20, 380, 498, 938, 1607, 1751
FriOI	GRGCYC	4 cut(s)	936, 1147, 1336, 2053
Fsp4HI	GCNGC	9 cut(s)	6, 82, 171, 468, 471, 798, 1578, 1587, 2013
FspBI	CTAG	4 cut(s)	752, 881, 1398, 1517
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	9 cut(s)	6, 82, 171, 468, 471, 798, 1578, 1587, 2013
GsaI	CCCAGC	3 cut(s)	41, 1706, 1953
GsuI	CTGGAG	1 cut(s)	1268
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	8 cut(s)	1034, 1161, 1334, 1480, 1523, 1707, 1874, 2178
HapII	CCGG	2 cut(s)	154, 1652
HgaI	GACGC	1 cut(s)	1307
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	1897
HindII	GTYRAC	1 cut(s)	1897
HindIII	AAGCTT	5 cut(s)	821, 1248, 1488, 1569, 1694
HinfI	GANTC	9 cut(s)	30, 114, 162, 640, 962, 1067, 1300, 1640, 1843
HpaII	CCGG	2 cut(s)	154, 1652
HphI	GGTGA	6 cut(s)	90, 139, 175, 220, 1830, 1939
Hpy166II	GTNNAC	4 cut(s)	190, 1227, 1233, 1897
Hpy8I	GTNNAC	4 cut(s)	190, 1227, 1233, 1897
HpyAV	CCTTC	8 cut(s)	105, 494, 1282, 1623, 1658, 1729, 1880, 2152
HpyCH4III	ACNGT	2 cut(s)	187, 852
HpyCH4IV	ACGT	5 cut(s)	1084, 1151, 1229, 1235, 2164
HpySE526I	ACGT	5 cut(s)	1084, 1151, 1229, 1235, 2164
Hsp92I	GRCGYC	1 cut(s)	91
HspAI	GCGC	1 cut(s)	91
KasI	GGCGCC	1 cut(s)	90
Ksp22I	TGATCA	3 cut(s)	256, 1411, 1821
LguI	GCTCTTC	2 cut(s)	447, 2073
LmnI	GCTCC	3 cut(s)	208, 1594, 2048
Lsp1109I	GCAGC	7 cut(s)	68, 457, 479, 784, 1573, 1589, 2024
LweI	GCATC	6 cut(s)	508, 520, 737, 960, 997, 1407
MaeI	CTAG	4 cut(s)	752, 881, 1398, 1517
MaeII	ACGT	5 cut(s)	1084, 1151, 1229, 1235, 2164
MaeIII	GTNAC	5 cut(s)	226, 233, 1319, 1345, 1546
MfeI	CAATTG	1 cut(s)	1203
MflI	RGATCY	2 cut(s)	355, 1978
MhlI	GDGCHC	6 cut(s)	637, 936, 1147, 1336, 2053, 2068
MlsI	TGGCCA	2 cut(s)	1034, 1161
MluCI	AATT	9 cut(s)	304, 842, 1180, 1203, 1428, 1753, 1776, 1800, 1806
MluNI	TGGCCA	2 cut(s)	1034, 1161
Mly113I	GGCGCC	1 cut(s)	91
MlyI	GAGTC	4 cut(s)	156, 649, 1061, 1852
MmeI	TCCRAC	3 cut(s)	451, 1044, 1341
Mox20I	TGGCCA	2 cut(s)	1034, 1161
Mph1103I	ATGCAT	1 cut(s)	990
MroXI	GAANNNNTTC	1 cut(s)	1500
MscI	TGGCCA	2 cut(s)	1034, 1161
MseI	TTAA	7 cut(s)	282, 342, 362, 507, 845, 938, 1910
MslI	CAYNNNNRTG	4 cut(s)	516, 1326, 1341, 1785
Msp20I	TGGCCA	2 cut(s)	1034, 1161
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	2 cut(s)	154, 1652
MspR9I	CCNGG	4 cut(s)	154, 611, 959, 2046
MunI	CAATTG	1 cut(s)	1203
Mva1269I	GAATGC	4 cut(s)	340, 1084, 1135, 1477
MvaI	CCWGG	3 cut(s)	611, 959, 2046
NarI	GGCGCC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	2 cut(s)	1162, 1551
NheI	GCTAGC	1 cut(s)	880
NlaIV	GGNNCC	8 cut(s)	92, 131, 204, 1016, 1333, 1334, 1524, 1873
NmeAIII	GCCGAG	2 cut(s)	83, 328
NmuCI	GTSAC	3 cut(s)	226, 1319, 1546
NsiI	ATGCAT	1 cut(s)	990
NspI	RCATGY	1 cut(s)	988
PagI	TCATGA	3 cut(s)	415, 535, 1882
PasI	CCCWGGG	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	1480
PciSI	GCTCTTC	2 cut(s)	447, 2073
PctI	GAATGC	4 cut(s)	340, 1084, 1135, 1477
PdmI	GAANNNNTTC	1 cut(s)	1500
PfeI	GAWTC	5 cut(s)	30, 114, 962, 1300, 1640
PflMI	CCANNNNNTGG	1 cut(s)	1924
PkrI	GCNGC	9 cut(s)	7, 83, 172, 469, 472, 799, 1579, 1588, 2014
PleI	GAGTC	4 cut(s)	156, 648, 1061, 1851
PluTI	GGCGCC	1 cut(s)	94
PmaCI	CACGTG	1 cut(s)	1085
PmlI	CACGTG	1 cut(s)	1085
PpsI	GAGTC	4 cut(s)	156, 648, 1061, 1851
Ppu21I	YACGTR	3 cut(s)	1085, 1230, 1236
PpuMI	RGGWCCY	1 cut(s)	129
PshBI	ATTAAT	1 cut(s)	845
Psp124BI	GAGCTC	2 cut(s)	936, 2053
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	3 cut(s)	609, 957, 2044
PspCI	CACGTG	1 cut(s)	1085
PspFI	CCCAGC	3 cut(s)	37, 1702, 1949
PspGI	CCWGG	3 cut(s)	609, 957, 2044
PspN4I	GGNNCC	8 cut(s)	92, 131, 204, 1016, 1333, 1334, 1524, 1873
PspOMI	GGGCCC	1 cut(s)	1332
PspPI	GGNCC	8 cut(s)	129, 156, 1015, 1332, 1333, 1522, 1705, 1872
PspPPI	RGGWCCY	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	1361, 1393
PstI	CTGCAG	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	355, 1978
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	5 cut(s)	499, 1055, 1187, 1242, 1619
RsaNI	GTAC	5 cut(s)	498, 1054, 1186, 1241, 1618
RseI	CAYNNNNRTG	4 cut(s)	516, 1326, 1341, 1785
SacI	GAGCTC	2 cut(s)	936, 2053
SapI	GCTCTTC	2 cut(s)	447, 2073
SaqAI	TTAA	7 cut(s)	282, 342, 362, 507, 845, 938, 1910
SatI	GCNGC	9 cut(s)	6, 82, 171, 468, 471, 798, 1578, 1587, 2013
Sau96I	GGNCC	8 cut(s)	129, 156, 1015, 1332, 1333, 1522, 1705, 1872
SchI	GAGTC	4 cut(s)	156, 649, 1061, 1852
ScrFI	CCNGG	4 cut(s)	154, 611, 959, 2046
SduI	GDGCHC	6 cut(s)	637, 936, 1147, 1336, 2053, 2068
SfaNI	GCATC	6 cut(s)	508, 520, 737, 960, 997, 1407
SfcI	CTRYAG	2 cut(s)	798, 1876
SfoI	GGCGCC	1 cut(s)	92
SinI	GGWCC	3 cut(s)	129, 156, 1015
SmiMI	CAYNNNNRTG	4 cut(s)	516, 1326, 1341, 1785
SmlI	CTYRAG	5 cut(s)	309, 665, 875, 1697, 2052
SmoI	CTYRAG	5 cut(s)	309, 665, 875, 1697, 2052
SnaBI	TACGTA	2 cut(s)	1230, 1236
Sse9I	AATT	9 cut(s)	304, 842, 1180, 1203, 1428, 1753, 1776, 1800, 1806
SseBI	AGGCCT	1 cut(s)	1480
SsiI	CCGC	5 cut(s)	150, 171, 955, 1008, 2035
SspDI	GGCGCC	1 cut(s)	90
SspI	AATATT	1 cut(s)	1914
SspMI	CTAG	4 cut(s)	752, 881, 1398, 1517
SstI	GAGCTC	2 cut(s)	936, 2053
StuI	AGGCCT	1 cut(s)	1480
StyD4I	CCNGG	4 cut(s)	152, 609, 957, 2044
StyI	CCWWGG	5 cut(s)	452, 1162, 1551, 1590, 2016
TaaI	ACNGT	2 cut(s)	187, 852
TaiI	ACGT	5 cut(s)	1087, 1154, 1232, 1238, 2167
TaqI	TCGA	2 cut(s)	1074, 1095
TaqII	GACCGA	1 cut(s)	770
TasI	AATT	9 cut(s)	304, 842, 1180, 1203, 1428, 1753, 1776, 1800, 1806
TatI	WGTACW	4 cut(s)	497, 1053, 1185, 1240
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	5 cut(s)	30, 114, 962, 1300, 1640
Tru1I	TTAA	7 cut(s)	282, 342, 362, 507, 845, 938, 1910
Tru9I	TTAA	7 cut(s)	282, 342, 362, 507, 845, 938, 1910
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	3 cut(s)	226, 1319, 1546
TseI	GCWGC	8 cut(s)	5, 81, 467, 470, 797, 1577, 1586, 2012
Tsp45I	GTSAC	3 cut(s)	226, 1319, 1546
TspGWI	ACGGA	2 cut(s)	1338, 1534
TspRI	CASTG	1 cut(s)	564
Van91I	CCANNNNNTGG	1 cut(s)	1924
VpaK11BI	GGWCC	3 cut(s)	129, 156, 1015
VspI	ATTAAT	1 cut(s)	845
XagI	CCTNNNNNAGG	1 cut(s)	488
XapI	RAATTY	5 cut(s)	304, 1180, 1753, 1776, 1806
XceI	RCATGY	1 cut(s)	988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1001
XmiI	GTMKAC	1 cut(s)	1232
XmnI	GAANNNNTTC	1 cut(s)	1500
XspI	CTAG	4 cut(s)	752, 881, 1398, 1517
Zsp2I	ATGCAT	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.