FvH4_7g02050

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007263
Physical Location & Seq
Reverse (-)
2406657 .. 2411717
5061 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02050.t2

Sequence Viewer

Length: 1635 bp
ATGACTGATTCTAAGCTATTTTTATTCGGTTCTTTCTCTGAAGATGAGACGAAGTCGTTGCTTCTAAACCAATCACTGGGGAAGCCTTCACCAGTGAAGGATGAAAAGCCATTGGAAACAAATGTATTGCAGTTTGGTTCGATAAATTTTGTTACGGATAAAGCATTAGTCGAGTTGAATCGTGAATCATGTAGACCACAAAGTTGTTTGAAAGTACCCAGCAAATTGGAGTCTGTAAATGAAAATAATACGCGCAATGGAGTGAAGACTGCAGAAACAGTAGATGGTAATTTAGTAGGATCAGTAGCACTTCCGACACAGAATGGGTGTGCTGACCATTACAGTCAGAGTTCTACTCATAGTAATGGCGTGAAAGAGATTACGGCGGATGATGTTGATTTATCTTCATCACATCTATCACATAATGAAGGTGGTCTCACAAATCAATTTTCGAGTTTGGAATTGCAGAGCAAAGAGCAGAATGGTAGTGTTGGTTATCTATCGGTTTCCAATTCAAAGGGTGAACTCCAAAAGTCACTGAATGGGCCTGCCACAGTCTGTACAAGTTTGTTGCCTCGTGGTTTAATCAACTCAGGAAATCTCTGCTTTCTTAATGCAACTCTGCAGGCTCTCCTATCCTGTTCTCCATTTGTTCAACTTGTTCACGAATTAAGAACTCGCAACATCCCCAAGATTGGCTATCCCACATTGTGTGCATTTGCCGAGTTTGTCTCTGAATTCAACATGCCTAGTTCAAGTGCAAAGAATAAAGATACAAGTGTTGTTGAGACTGGTAGGCCTTTTAGCCCTGCCATGTTTGAAGGTGTTCTTAAAGCTTTTACTCCAGATGTACCAAGTACCATATCAGGCAGGCCAAGACAAGAAGACGCTCAGGAGTTTCTTAGCTTCATTATGGATCGGATGCATGATGAGTTACTTAAGCTTGAAGGACAATGCTCATTCTTAAATGGTAGCAAATCATCTATTGTATCTTCTGCAGAAGAAGATGAATGGGAGACGGTTGGCCCAAAGAATACATCTGCAGTAACTAGAACACAGAGTTTTGTCCCGTCAGAATTGAGTGATATTTTTGGAGGACAATTAAGAAGTGTGGTGAAGGCAAAAGGAAATAAAGCTTCTGCTACTGTACAACCATATTTATTGCTTCACCTTGATATTTATCCTGATGCTGTTCGAACAATTGAAGATGCGCTTAAGCTGTTTTCTGCTCCAGAAACTCTCGAGGGATATCGAACATCAGCTGCGGGCAAGGCTGGTATTGTGAGTGCAAGTAAATCAATAAAGATACTAAAGCTTTCAAAGATAATGATATTGCACTTGATGCGTTTTGGTTATGGAAGTCAAGGAAGCACCAAGTTGCATAAGCCTGTGTACTTTCCACTTGAATTGGGGATTGCTCGTGAATTACTTGTTTCTCCAACTTCTGAGGGACGAAAATACAAACTTGTTGCGACAATTACTCATCACGGGAGAGACCCCTTCAAGGGGCATTATACAACCGATGCTCTCTATAATGGTCAGTGGCTCCGGTTTGATGATTCATCTGTCGCAGCAATTGGGACCAAAAAAGTGCTGCATGACCAGGCATATGTCCTTATCTACAAGCAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04139 map04139
Pfam Domains
Protein Families
UCH

Protein Analysis

545

Amino Acids

59.32

Weight (kDa)

6.69

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 193 - 404 2.9e-18 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 76
AccI GTMKAC 1 cut(s) 193
AccII CGCG 1 cut(s) 253
AciI CCGC 2 cut(s) 386, 1265
AclWI GGATC 2 cut(s) 307, 924
AcsI RAATTY 2 cut(s) 145, 737
AcuI CTGAAG 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 711
AfaI GTAC 6 cut(s) 216, 562, 852, 859, 1149, 1394
AfiI CCNNNNNNNGG 5 cut(s) 76, 695, 1504, 1505, 1506
AflII CTTAAG 2 cut(s) 938, 1214
AjnI CCWGG 1 cut(s) 1602
AluBI AGCT 8 cut(s) 16, 836, 906, 943, 1136, 1219, 1262, 1315
AluI AGCT 8 cut(s) 16, 836, 906, 943, 1136, 1219, 1262, 1315
Alw26I GTCTC 6 cut(s) 41, 440, 736, 782, 1010, 1488
AlwI GGATC 2 cut(s) 307, 924
Ama87I CYCGRG 1 cut(s) 1241
AoxI GGCC 4 cut(s) 545, 797, 872, 1024
ApeKI GCWGC 3 cut(s) 1262, 1571, 1594
ApoI RAATTY 2 cut(s) 145, 737
Asp700I GAANNNNTTC 1 cut(s) 825
AspLEI GCGC 2 cut(s) 255, 1213
AspS9I GGNCC 3 cut(s) 545, 1025, 1581
AsuHPI GGTGA 4 cut(s) 81, 533, 1126, 1160
AsuII TTCGAA 1 cut(s) 1195
AvaI CYCGRG 1 cut(s) 1241
AvaII GGWCC 1 cut(s) 1581
BaeI ACNNNNGTAYC 2 cut(s) 765, 798
BauI CACGAG 2 cut(s) 576, 1419
BbsI GAAGAC 2 cut(s) 272, 891
BbvI GCAGC 3 cut(s) 1249, 1581, 1583
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 399
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 1 cut(s) 1604
BcoDI GTCTC 6 cut(s) 41, 440, 736, 782, 1010, 1488
BfaI CTAG 2 cut(s) 750, 1050
BfmI CTRYAG 4 cut(s) 270, 623, 996, 1041
BfrI CTTAAG 2 cut(s) 938, 1214
BisI GCNGC 3 cut(s) 1263, 1572, 1595
BlsI GCNGC 3 cut(s) 1264, 1573, 1596
Bme1390I CCNGG 1 cut(s) 1604
Bme18I GGWCC 1 cut(s) 1581
BmeT110I CYCGRG 1 cut(s) 1241
BmgT120I GGNCC 3 cut(s) 545, 1025, 1581
BmiI GGNNCC 2 cut(s) 1547, 1582
BmrFI CCNGG 1 cut(s) 1604
BmrI ACTGGG 1 cut(s) 86
BmsI GCATC 5 cut(s) 912, 1177, 1198, 1332, 1513
BmuI ACTGGG 1 cut(s) 86
BpiI GAAGAC 2 cut(s) 272, 891
BplI GAGNNNNNCTC 4 cut(s) 340, 372, 716, 748
BpmI CTGGAG 2 cut(s) 828, 1215
Bpu10I CCTNAGC 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 1195
BsaBI GATNNNNATC 1 cut(s) 1179
BsaI GGTCTC 2 cut(s) 440, 1488
BsaWI WCCGGW 1 cut(s) 1548
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 695, 1504, 1505, 1506
Bse1I ACTGG 3 cut(s) 81, 92, 796
Bse3DI GCAATG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 1179
BseBI CCWGG 1 cut(s) 1604
BseGI GGATG 4 cut(s) 106, 394, 684, 927
BseJI GATNNNNATC 1 cut(s) 1179
BseLI CCNNNNNNNGG 5 cut(s) 76, 695, 1504, 1505, 1506
BseMI GCAATG 1 cut(s) 262
BseMII CTCAG 3 cut(s) 606, 905, 1437
BseNI ACTGG 3 cut(s) 81, 92, 796
BseXI GCAGC 3 cut(s) 1249, 1581, 1583
BseYI CCCAGC 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 4 cut(s) 547, 799, 874, 1026
BsiHKCI CYCGRG 1 cut(s) 1241
BsiSI CCGG 1 cut(s) 1549
BslFI GGGAC 3 cut(s) 1052, 1464, 1594
BslI CCNNNNNNNGG 5 cut(s) 76, 695, 1504, 1505, 1506
BsmAI GTCTC 6 cut(s) 41, 440, 736, 782, 1010, 1488
BsmBI CGTCTC 2 cut(s) 41, 1010
BsmFI GGGAC 3 cut(s) 1052, 1464, 1594
BsnI GGCC 4 cut(s) 547, 799, 874, 1026
Bso31I GGTCTC 2 cut(s) 440, 1488
BsoBI CYCGRG 1 cut(s) 1241
Bsp119I TTCGAA 1 cut(s) 1195
Bsp1407I TGTACA 2 cut(s) 560, 1147
Bsp143I GATC 2 cut(s) 299, 916
BspACI CCGC 2 cut(s) 386, 1265
BspANI GGCC 4 cut(s) 547, 799, 874, 1026
BspCNI CTCAG 3 cut(s) 605, 904, 1438
BspFNI CGCG 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 1547, 1582
BspMAI CTGCAG 4 cut(s) 274, 627, 1000, 1045
BspPI GGATC 2 cut(s) 307, 924
BspT104I TTCGAA 1 cut(s) 1195
BspTI CTTAAG 2 cut(s) 938, 1214
BspTNI GGTCTC 2 cut(s) 440, 1488
BsrDI GCAATG 1 cut(s) 262
BsrGI TGTACA 2 cut(s) 560, 1147
BsrI ACTGG 3 cut(s) 81, 92, 796
BssMI GATC 2 cut(s) 299, 916
BssSI CACGAG 2 cut(s) 576, 1419
Bst2BI CACGAG 2 cut(s) 576, 1419
Bst2UI CCWGG 1 cut(s) 1604
Bst4CI ACNGT 5 cut(s) 280, 344, 556, 1021, 1147
BstAFI CTTAAG 2 cut(s) 938, 1214
BstAPI GCANNNNNTGC 1 cut(s) 1342
BstAUI TGTACA 2 cut(s) 560, 1147
BstBI TTCGAA 1 cut(s) 1195
BstC8I GCNNGC 4 cut(s) 549, 627, 872, 1267
BstDEI CTNAG 5 cut(s) 12, 592, 891, 902, 1446
BstF5I GGATG 4 cut(s) 106, 394, 684, 927
BstFNI CGCG 1 cut(s) 253
BstHHI GCGC 2 cut(s) 255, 1213
BstKTI GATC 2 cut(s) 302, 919
BstMAI GTCTC 6 cut(s) 41, 440, 736, 782, 1010, 1488
BstMBI GATC 2 cut(s) 299, 916
BstMWI GCNNNNNNNGC 2 cut(s) 1271, 1342
BstNI CCWGG 1 cut(s) 1604
BstNSI RCATGY 1 cut(s) 748
BstSCI CCNGG 1 cut(s) 1602
BstSFI CTRYAG 4 cut(s) 270, 623, 996, 1041
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 3 cut(s) 1249, 1581, 1583
BstV2I GAAGAC 2 cut(s) 272, 891
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuRI GGCC 4 cut(s) 547, 799, 874, 1026
BtsCI GGATG 4 cut(s) 106, 394, 684, 927
BtsIMutI CAGTG 4 cut(s) 74, 99, 536, 1547
Cac8I GCNNGC 4 cut(s) 549, 627, 872, 1267
CfoI GCGC 2 cut(s) 255, 1213
Cfr13I GGNCC 3 cut(s) 545, 1025, 1581
CseI GACGC 1 cut(s) 896
Csp6I GTAC 6 cut(s) 215, 561, 851, 858, 1148, 1393
CspCI CAANNNNNGTGG 2 cut(s) 1389, 1424
CviAII CATG 5 cut(s) 189, 745, 814, 926, 1598
CviQI GTAC 6 cut(s) 215, 561, 851, 858, 1148, 1393
DdeI CTNAG 5 cut(s) 12, 592, 891, 902, 1446
DpnI GATC 2 cut(s) 301, 918
DpnII GATC 2 cut(s) 299, 916
DraIII CACNNNGTG 1 cut(s) 711
EciI GGCGGA 1 cut(s) 401
Eco147I AGGCCT 1 cut(s) 799
Eco31I GGTCTC 2 cut(s) 440, 1488
Eco32I GATATC 1 cut(s) 1250
Eco47I GGWCC 1 cut(s) 1581
Eco57I CTGAAG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 1241
EcoRI GAATTC 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 1602
EcoRV GATATC 1 cut(s) 1250
EcoT22I ATGCAT 1 cut(s) 927
Esp3I CGTCTC 2 cut(s) 41, 1010
FaeI CATG 5 cut(s) 192, 748, 817, 929, 1601
FalI AAGNNNNNCTT 4 cut(s) 813, 845, 1197, 1229
FaqI GGGAC 3 cut(s) 1052, 1464, 1594
FatI CATG 5 cut(s) 188, 744, 813, 925, 1597
FauI CCCGC 1 cut(s) 1258
FauNDI CATATG 1 cut(s) 1609
FblI GTMKAC 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 1263, 1572, 1595
FokI GGATG 4 cut(s) 113, 401, 671, 934
Fsp4HI GCNGC 3 cut(s) 1263, 1572, 1595
FspBI CTAG 2 cut(s) 750, 1050
GlaI GCGC 2 cut(s) 254, 1212
GluI GCNGC 3 cut(s) 1263, 1572, 1595
GsaI CCCAGC 1 cut(s) 222
GsuI CTGGAG 2 cut(s) 828, 1215
HaeIII GGCC 4 cut(s) 547, 799, 874, 1026
HapII CCGG 1 cut(s) 1549
HgaI GACGC 1 cut(s) 896
HhaI GCGC 2 cut(s) 255, 1213
Hin1II CATG 5 cut(s) 192, 748, 817, 929, 1601
Hin6I GCGC 2 cut(s) 253, 1211
HinP1I GCGC 2 cut(s) 253, 1211
HindIII AAGCTT 4 cut(s) 834, 941, 1134, 1313
HinfI GANTC 5 cut(s) 8, 178, 185, 230, 1559
HpaII CCGG 1 cut(s) 1549
HphI GGTGA 4 cut(s) 81, 533, 1126, 1160
Hpy166II GTNNAC 4 cut(s) 194, 524, 664, 1393
Hpy188I TCNGA 7 cut(s) 40, 315, 348, 736, 921, 1075, 1447
Hpy188III TCNNGA 9 cut(s) 182, 594, 665, 845, 893, 1184, 1232, 1241, 1421
Hpy8I GTNNAC 4 cut(s) 194, 524, 664, 1393
HpyAV CCTTC 7 cut(s) 91, 96, 422, 815, 941, 1111, 1510
HpyCH4III ACNGT 5 cut(s) 280, 344, 556, 1021, 1147
HpyF10VI GCNNNNNNNGC 2 cut(s) 1271, 1342
HpyF3I CTNAG 5 cut(s) 12, 592, 891, 902, 1446
Hsp92II CATG 5 cut(s) 192, 748, 817, 929, 1601
HspAI GCGC 2 cut(s) 253, 1211
Kzo9I GATC 2 cut(s) 299, 916
LmnI GCTCC 2 cut(s) 1234, 1551
Lsp1109I GCAGC 3 cut(s) 1249, 1581, 1583
LweI GCATC 5 cut(s) 912, 1177, 1198, 1332, 1513
MaeI CTAG 2 cut(s) 750, 1050
MaeIII GTNAC 4 cut(s) 151, 534, 933, 1045
MalI GATC 2 cut(s) 301, 918
MboI GATC 2 cut(s) 299, 916
MboII GAAGA 8 cut(s) 53, 277, 396, 896, 984, 1013, 1016, 1217
MfeI CAATTG 2 cut(s) 1200, 1575
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 338, 1463
MnlI CCTC 4 cut(s) 585, 1088, 1237, 1441
Mph1103I ATGCAT 1 cut(s) 927
MroXI GAANNNNTTC 1 cut(s) 825
MseI TTAA 8 cut(s) 584, 612, 671, 831, 939, 965, 1103, 1215
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 1262
MspCI CTTAAG 2 cut(s) 938, 1214
MspI CCGG 1 cut(s) 1549
MspR9I CCNGG 1 cut(s) 1604
MunI CAATTG 2 cut(s) 1200, 1575
MvaI CCWGG 1 cut(s) 1604
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 1271, 1342
NdeI CATATG 1 cut(s) 1609
NdeII GATC 2 cut(s) 299, 916
NlaIII CATG 5 cut(s) 192, 748, 817, 929, 1601
NlaIV GGNNCC 2 cut(s) 1547, 1582
NmeAIII GCCGAG 1 cut(s) 748
NmuCI GTSAC 1 cut(s) 534
NsiI ATGCAT 1 cut(s) 927
NspI RCATGY 1 cut(s) 748
NspV TTCGAA 1 cut(s) 1195
PaeR7I CTCGAG 1 cut(s) 1241
PceI AGGCCT 1 cut(s) 799
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 4 cut(s) 8, 178, 185, 1559
PflFI GACNNNGTC 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 3 cut(s) 1264, 1573, 1596
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 1602
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 1602
PspN4I GGNNCC 2 cut(s) 1547, 1582
PspPI GGNCC 3 cut(s) 545, 1025, 1581
PstI CTGCAG 4 cut(s) 274, 627, 1000, 1045
PsyI GACNNNGTC 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 1262
RsaI GTAC 6 cut(s) 216, 562, 852, 859, 1149, 1394
RsaNI GTAC 6 cut(s) 215, 561, 851, 858, 1148, 1393
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 8 cut(s) 584, 612, 671, 831, 939, 965, 1103, 1215
SatI GCNGC 3 cut(s) 1263, 1572, 1595
Sau3AI GATC 2 cut(s) 299, 916
Sau96I GGNCC 3 cut(s) 545, 1025, 1581
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 1604
SfaNI GCATC 5 cut(s) 912, 1177, 1198, 1332, 1513
SfcI CTRYAG 4 cut(s) 270, 623, 996, 1041
Sfr274I CTCGAG 1 cut(s) 1241
SfuI TTCGAA 1 cut(s) 1195
SinI GGWCC 1 cut(s) 1581
SlaI CTCGAG 1 cut(s) 1241
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 3 cut(s) 938, 1214, 1241
SmoI CTYRAG 3 cut(s) 938, 1214, 1241
SseBI AGGCCT 1 cut(s) 799
SsiI CCGC 2 cut(s) 386, 1265
SspMI CTAG 2 cut(s) 750, 1050
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 1 cut(s) 1602
TaaI ACNGT 5 cut(s) 280, 344, 556, 1021, 1147
TaqI TCGA 6 cut(s) 140, 171, 452, 1195, 1242, 1252
TatI WGTACW 3 cut(s) 560, 1147, 1392
TfiI GAWTC 4 cut(s) 8, 178, 185, 1559
Tru1I TTAA 8 cut(s) 584, 612, 671, 831, 939, 965, 1103, 1215
Tru9I TTAA 8 cut(s) 584, 612, 671, 831, 939, 965, 1103, 1215
TscAI CASTG 4 cut(s) 81, 99, 543, 1547
TseFI GTSAC 1 cut(s) 534
TseI GCWGC 3 cut(s) 1262, 1571, 1594
Tsp45I GTSAC 1 cut(s) 534
TspDTI ATGAA 7 cut(s) 117, 255, 396, 441, 898, 1023, 1551
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 4 cut(s) 81, 99, 543, 1547
Tth111I GACNNNGTC 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 76
Vha464I CTTAAG 2 cut(s) 938, 1214
VpaK11BI GGWCC 1 cut(s) 1581
XapI RAATTY 2 cut(s) 145, 737
XceI RCATGY 1 cut(s) 748
XhoI CTCGAG 1 cut(s) 1241
XmiI GTMKAC 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 2 cut(s) 750, 1050
Zsp2I ATGCAT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.