Rw1G003190

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007263
Physical Location & Seq
Forward (+)
5817456 .. 5822625
5170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003190.1

Sequence Viewer

Length: 1632 bp
ATGACTGATTCTAAGCTATTCATATTTGGGTCATTCTCTGAAGATGAGACCAAGTCATTGCTTCTAAAGCAATCACCGGGGAAGCCGTCACCTGTGAAGGGTGAAAAGCCAGTGGAAACAAACGTATTGCAGTTTGGTTCGATAAATTTTGTTACGGATAAATCTTTAGTTGAGTTGAATGGGCGATCAAGTAGACAGCAAAGTTGTTTGAAGGGGCCGAGCAAATTGCAGTCTCTAAATGCAGATAATAAGCACAATGAAGTTAAGACTGCAAAAGCTGGAGATAATAATTTACTAGGATCAGTGGCAATTCCGACACAGAATGGGTGTGCTGATCATCACAGTCACAGTTCTACTCATAGTAATGGTGTAAAAGAGGTTACGACAGATGATATTGATTTGTCTTCATCACATCTATCCCAGAATGAAGGTGGTTTCTCAAATCAATTTTCAAGTTTGAATTTGCAAAGCAGAGAGCAGAATGGTAGTGTTGGTGATTTATCAGTTTCTGATTCTAAGGGTGAACTCCAAAAGTCCTTGAATGGGCCTGTCTGTACAATTTTGTTGCCTCGTGGTTTAATCAACTCGGGAAATCTCTGCTTTCTTAATGCGACTCTGCAGGCTCTCCTATCCTGTTCTCCTTTCGTTCAACTTCTTCATGAATTAAGAACTCGCAACATCCCCAAGATTGGCTACCCCACATTGTGTGCATTTGCTGAGTTTGTCTCGGAATTCGACGTGCCTAGTTCAAGTTCAAAGAATAAAGATACAAGTGTTGCCGAGGCTGGTAGGCCTTTTAGCCCTGCCATGTTTGAAGGTGTTCTTAAAGCTTTTACTCCAGATGTGCCAAGTACCATATCAGGCAGGCCAAGACAAGAAGATGCTCAGGAGTTTCTTAGCTTCATTATGGATCAGATGCATGATGAGTTACTTAAGCTTGAAGGACAATCCTCGTGCTTAAATGGGGGAAAATCATCTCTTGTATCTTCTGCAGAAGATGATGAATGGGAGACGGTTGGCCCAAAGAATACATCTGCAGTAACTAGAACACAGAGTTTTGTCCCTTCAGAATTGAGTGATATTTTTGGTGGACAATTAAGAAGTGTGGTGAAGGCAAGAGGAAATAAAGCTTCTGCTACTGTACAACCATATCTATTGCTGCACCTTGATATTAATCCTGAAGCTGTTCGTACTATTGAAGATGCACTTAAGTTGTTTTCTGCTCCAGAAACTCTTGAGGGATATCGAACATCAGCTGCGGGCAAGGCTGGTGTTGTGAGTGCAAGTAAATCAATAAAAATACAAAAGCTTTCAAAGATAATGATACTGCATTTGATGCGTTTTGGTTATGGAAGTCAAGGAAGCACCAAGTTGCATAAGCCTGTGCACTTTCCACTCGAATTGGTGTTTGGTCGTGAATTGCTTGTTTCTCCAACATCTGAGGGTCGAAAATACAAACTTGTTGCTACAATTACTCATCATGGGAGAGATCCTTCCAAGGGGCATTATACAACTGATGCTCTTTATGCTAGTGGTCAGTGGCTCCGGTTTGATGATTCATCTGTCACAGCAATTGGGACCAAAAAAGTGCTGCATGACCAGGCATATGTCCTTATCTACAAACAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04139 map04139
Pfam Domains
Protein Families
UCH

Protein Analysis

543

Amino Acids

58.89

Weight (kDa)

7.26

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 191 - 540 1.9e-45 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 193
AciI CCGC 1 cut(s) 1259
AclWI GGATC 3 cut(s) 307, 918, 1484
AcsI RAATTY 3 cut(s) 145, 460, 731
AcuI CTGAAG 3 cut(s) 60, 1050, 1200
AdeI CACNNNGTG 1 cut(s) 705
AfaI GTAC 4 cut(s) 556, 853, 1143, 1192
AfiI CCNNNNNNNGG 4 cut(s) 98, 543, 689, 1499
AflII CTTAAG 2 cut(s) 932, 1208
AjiI CACGTC 1 cut(s) 739
AjnI CCWGG 1 cut(s) 1599
AjuI GAANNNNNNNTTGG 2 cut(s) 1392, 1424
AluBI AGCT 9 cut(s) 16, 278, 830, 900, 937, 1130, 1184, 1256, 1309
AluI AGCT 9 cut(s) 16, 278, 830, 900, 937, 1130, 1184, 1256, 1309
Alw21I GWGCWC 1 cut(s) 1389
Alw26I GTCTC 4 cut(s) 41, 237, 730, 1004
Alw44I GTGCAC 1 cut(s) 1385
AlwI GGATC 3 cut(s) 307, 918, 1484
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 586
AoxI GGCC 5 cut(s) 215, 545, 791, 866, 1018
ApaLI GTGCAC 1 cut(s) 1385
ApeKI GCWGC 3 cut(s) 1159, 1256, 1591
ApoI RAATTY 3 cut(s) 145, 460, 731
AseI ATTAAT 1 cut(s) 1173
Asp700I GAANNNNTTC 2 cut(s) 819, 1185
AspS9I GGNCC 4 cut(s) 215, 545, 1019, 1578
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 6 cut(s) 66, 81, 113, 506, 533, 1120
AvaI CYCGRG 1 cut(s) 586
AvaII GGWCC 1 cut(s) 1578
BaeGI GKGCMC 1 cut(s) 1389
BaeI ACNNNNGTAYC 2 cut(s) 759, 792
BauI CACGAG 2 cut(s) 570, 952
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 1389
BbvI GCAGC 3 cut(s) 1146, 1243, 1578
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 1601
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 4 cut(s) 41, 237, 730, 1004
BfaI CTAG 4 cut(s) 296, 744, 1044, 1530
BfmI CTRYAG 3 cut(s) 617, 990, 1035
BfrI CTTAAG 2 cut(s) 932, 1208
BisI GCNGC 3 cut(s) 1160, 1257, 1592
BlsI GCNGC 3 cut(s) 1161, 1258, 1593
Bme1390I CCNGG 2 cut(s) 78, 1601
Bme18I GGWCC 1 cut(s) 1578
BmeT110I CYCGRG 1 cut(s) 586
BmgBI CACGTC 1 cut(s) 739
BmgT120I GGNCC 4 cut(s) 215, 545, 1019, 1578
BmiI GGNNCC 3 cut(s) 216, 1544, 1579
BmrFI CCNGG 2 cut(s) 78, 1601
BmsI GCATC 5 cut(s) 871, 906, 1192, 1326, 1507
BpiI GAAGAC 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 710, 742
BpmI CTGGAG 3 cut(s) 300, 822, 1209
Bpu10I CCTNAGC 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 1256
BpuMI CCSGG 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 1173
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 77, 780, 1497
BsaWI WCCGGW 1 cut(s) 1545
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 543, 689, 1499
Bse1I ACTGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 1173
BseBI CCWGG 1 cut(s) 1601
BseDI CCNNGG 3 cut(s) 77, 780, 1497
BseGI GGATG 1 cut(s) 678
BseJI GATNNNNATC 1 cut(s) 1173
BseLI CCNNNNNNNGG 4 cut(s) 98, 543, 689, 1499
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 3 cut(s) 708, 899, 1431
BseNI ACTGG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 1389
BseXI GCAGC 3 cut(s) 1146, 1243, 1578
BsgI GTGCAG 1 cut(s) 1145
BshFI GGCC 5 cut(s) 217, 547, 793, 868, 1020
BsiHKAI GWGCWC 1 cut(s) 1389
BsiHKCI CYCGRG 1 cut(s) 586
BsiSI CCGG 2 cut(s) 77, 1546
BslFI GGGAC 2 cut(s) 1046, 1591
BslI CCNNNNNNNGG 4 cut(s) 98, 543, 689, 1499
BsmAI GTCTC 4 cut(s) 41, 237, 730, 1004
BsmBI CGTCTC 1 cut(s) 1004
BsmFI GGGAC 2 cut(s) 1046, 1591
BsnI GGCC 5 cut(s) 217, 547, 793, 868, 1020
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 1389
Bsp1407I TGTACA 2 cut(s) 554, 1141
Bsp143I GATC 5 cut(s) 185, 299, 334, 910, 1489
BspACI CCGC 1 cut(s) 1259
BspANI GGCC 5 cut(s) 217, 547, 793, 868, 1020
BspCNI CTCAG 3 cut(s) 709, 898, 1432
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 3 cut(s) 216, 1544, 1579
BspMAI CTGCAG 3 cut(s) 621, 994, 1039
BspPI GGATC 3 cut(s) 307, 918, 1484
BspTI CTTAAG 2 cut(s) 932, 1208
BspTNI GGTCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 56
BsrGI TGTACA 2 cut(s) 554, 1141
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 3 cut(s) 77, 780, 1497
BssMI GATC 5 cut(s) 185, 299, 334, 910, 1489
BssSI CACGAG 2 cut(s) 570, 952
BssT1I CCWWGG 1 cut(s) 1497
Bst2BI CACGAG 2 cut(s) 570, 952
Bst2UI CCWGG 1 cut(s) 1601
Bst4CI ACNGT 5 cut(s) 344, 350, 1015, 1141, 1626
BstAFI CTTAAG 2 cut(s) 932, 1208
BstAPI GCANNNNNTGC 1 cut(s) 1336
BstAUI TGTACA 2 cut(s) 554, 1141
BstC8I GCNNGC 3 cut(s) 621, 866, 1261
BstDEI CTNAG 6 cut(s) 12, 516, 717, 885, 896, 1440
BstF5I GGATG 1 cut(s) 678
BstKTI GATC 5 cut(s) 188, 302, 337, 913, 1492
BstMAI GTCTC 4 cut(s) 41, 237, 730, 1004
BstMBI GATC 5 cut(s) 185, 299, 334, 910, 1489
BstMWI GCNNNNNNNGC 4 cut(s) 67, 1265, 1336, 1526
BstNI CCWGG 1 cut(s) 1601
BstSCI CCNGG 2 cut(s) 76, 1599
BstSFI CTRYAG 3 cut(s) 617, 990, 1035
BstSLI GKGCMC 1 cut(s) 1389
BstV1I GCAGC 3 cut(s) 1146, 1243, 1578
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 1489
BstYI RGATCY 1 cut(s) 1489
BsuRI GGCC 5 cut(s) 217, 547, 793, 868, 1020
BtrI CACGTC 1 cut(s) 739
BtsCI GGATG 1 cut(s) 678
BtsIMutI CAGTG 3 cut(s) 117, 309, 1544
Cac8I GCNNGC 3 cut(s) 621, 866, 1261
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 658
Cfr13I GGNCC 4 cut(s) 215, 545, 1019, 1578
Csp6I GTAC 4 cut(s) 555, 852, 1142, 1191
CspCI CAANNNNNGTGG 2 cut(s) 1383, 1418
CviAII CATG 5 cut(s) 659, 808, 920, 1481, 1595
CviQI GTAC 4 cut(s) 555, 852, 1142, 1191
DdeI CTNAG 6 cut(s) 12, 516, 717, 885, 896, 1440
DpnI GATC 5 cut(s) 187, 301, 336, 912, 1491
DpnII GATC 5 cut(s) 185, 299, 334, 910, 1489
DraIII CACNNNGTG 1 cut(s) 705
Eco130I CCWWGG 1 cut(s) 1497
Eco147I AGGCCT 1 cut(s) 793
Eco31I GGTCTC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 1244
Eco47I GGWCC 1 cut(s) 1578
Eco57I CTGAAG 3 cut(s) 60, 1050, 1200
Eco88I CYCGRG 1 cut(s) 586
EcoRI GAATTC 1 cut(s) 731
EcoRII CCWGG 1 cut(s) 1599
EcoRV GATATC 1 cut(s) 1244
EcoT14I CCWWGG 1 cut(s) 1497
EcoT22I ATGCAT 1 cut(s) 921
ErhI CCWWGG 1 cut(s) 1497
Esp3I CGTCTC 1 cut(s) 1004
FaeI CATG 5 cut(s) 662, 811, 923, 1484, 1598
FalI AAGNNNNNCTT 4 cut(s) 807, 839, 1191, 1223
FaqI GGGAC 2 cut(s) 1046, 1591
FatI CATG 5 cut(s) 658, 807, 919, 1480, 1594
FauI CCCGC 1 cut(s) 1252
FauNDI CATATG 1 cut(s) 1606
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 1160, 1257, 1592
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 3 cut(s) 1160, 1257, 1592
FspBI CTAG 4 cut(s) 296, 744, 1044, 1530
GluI GCNGC 3 cut(s) 1160, 1257, 1592
GsuI CTGGAG 3 cut(s) 300, 822, 1209
HaeIII GGCC 5 cut(s) 217, 547, 793, 868, 1020
HapII CCGG 2 cut(s) 77, 1546
Hin1II CATG 5 cut(s) 662, 811, 923, 1484, 1598
HindIII AAGCTT 4 cut(s) 828, 935, 1128, 1307
HinfI GANTC 4 cut(s) 8, 512, 613, 1556
HpaII CCGG 2 cut(s) 77, 1546
HphI GGTGA 6 cut(s) 66, 81, 113, 506, 533, 1120
Hpy166II GTNNAC 4 cut(s) 194, 524, 1091, 1387
Hpy188I TCNGA 7 cut(s) 40, 315, 511, 730, 915, 1069, 1441
Hpy188III TCNNGA 8 cut(s) 588, 659, 839, 887, 1178, 1226, 1235, 1415
Hpy8I GTNNAC 4 cut(s) 194, 524, 1091, 1387
Hpy99I CGWCG 1 cut(s) 740
HpyAV CCTTC 8 cut(s) 91, 205, 422, 809, 935, 1074, 1105, 1503
HpyCH4III ACNGT 5 cut(s) 344, 350, 1015, 1141, 1626
HpyCH4IV ACGT 2 cut(s) 123, 738
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 1265, 1336, 1526
HpyF3I CTNAG 6 cut(s) 12, 516, 717, 885, 896, 1440
HpySE526I ACGT 2 cut(s) 123, 738
Hsp92II CATG 5 cut(s) 662, 811, 923, 1484, 1598
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 5 cut(s) 185, 299, 334, 910, 1489
LmnI GCTCC 2 cut(s) 1228, 1548
Lsp1109I GCAGC 3 cut(s) 1146, 1243, 1578
LweI GCATC 5 cut(s) 871, 906, 1192, 1326, 1507
MaeI CTAG 4 cut(s) 296, 744, 1044, 1530
MaeII ACGT 2 cut(s) 123, 738
MaeIII GTNAC 7 cut(s) 87, 151, 344, 379, 927, 1039, 1564
MalI GATC 5 cut(s) 187, 301, 336, 912, 1491
MboI GATC 5 cut(s) 185, 299, 334, 910, 1489
MboII GAAGA 7 cut(s) 53, 396, 647, 890, 978, 1007, 1211
MfeI CAATTG 1 cut(s) 1572
MflI RGATCY 1 cut(s) 1489
MhlI GDGCHC 1 cut(s) 1389
MlyI GAGTC 1 cut(s) 607
MmeI TCCRAC 2 cut(s) 338, 1457
MnlI CCTC 7 cut(s) 370, 579, 775, 961, 1112, 1231, 1435
Mph1103I ATGCAT 1 cut(s) 921
MroXI GAANNNNTTC 2 cut(s) 819, 1185
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 1256
MspCI CTTAAG 2 cut(s) 932, 1208
MspI CCGG 2 cut(s) 77, 1546
MspR9I CCNGG 2 cut(s) 78, 1601
MunI CAATTG 1 cut(s) 1572
MvaI CCWGG 1 cut(s) 1601
MwoI GCNNNNNNNGC 4 cut(s) 67, 1265, 1336, 1526
NciI CCSGG 1 cut(s) 78
NdeI CATATG 1 cut(s) 1606
NdeII GATC 5 cut(s) 185, 299, 334, 910, 1489
NlaIII CATG 5 cut(s) 662, 811, 923, 1484, 1598
NlaIV GGNNCC 3 cut(s) 216, 1544, 1579
NmeAIII GCCGAG 2 cut(s) 243, 805
NmuCI GTSAC 3 cut(s) 87, 344, 1564
NsiI ATGCAT 1 cut(s) 921
PagI TCATGA 1 cut(s) 658
PceI AGGCCT 1 cut(s) 793
PdmI GAANNNNTTC 2 cut(s) 819, 1185
PfeI GAWTC 3 cut(s) 8, 512, 1556
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 3 cut(s) 1161, 1258, 1593
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
PshBI ATTAAT 1 cut(s) 1173
Psp6I CCWGG 1 cut(s) 1599
PspGI CCWGG 1 cut(s) 1599
PspN4I GGNNCC 3 cut(s) 216, 1544, 1579
PspPI GGNCC 4 cut(s) 215, 545, 1019, 1578
PstI CTGCAG 3 cut(s) 621, 994, 1039
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 1489
PsyI GACNNNGTC 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 1256
RsaI GTAC 4 cut(s) 556, 853, 1143, 1192
RsaNI GTAC 4 cut(s) 555, 852, 1142, 1191
RseI CAYNNNNRTG 1 cut(s) 363
SatI GCNGC 3 cut(s) 1160, 1257, 1592
Sau3AI GATC 5 cut(s) 185, 299, 334, 910, 1489
Sau96I GGNCC 4 cut(s) 215, 545, 1019, 1578
SchI GAGTC 1 cut(s) 607
ScrFI CCNGG 2 cut(s) 78, 1601
SduI GDGCHC 1 cut(s) 1389
SfaNI GCATC 5 cut(s) 871, 906, 1192, 1326, 1507
SfcI CTRYAG 3 cut(s) 617, 990, 1035
SinI GGWCC 1 cut(s) 1578
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 3 cut(s) 932, 1208, 1235
SmoI CTYRAG 3 cut(s) 932, 1208, 1235
SseBI AGGCCT 1 cut(s) 793
SsiI CCGC 1 cut(s) 1259
SspMI CTAG 4 cut(s) 296, 744, 1044, 1530
StuI AGGCCT 1 cut(s) 793
StyD4I CCNGG 2 cut(s) 76, 1599
StyI CCWWGG 1 cut(s) 1497
TaaI ACNGT 5 cut(s) 344, 350, 1015, 1141, 1626
TaiI ACGT 2 cut(s) 126, 741
TaqI TCGA 5 cut(s) 140, 735, 1246, 1398, 1447
TatI WGTACW 2 cut(s) 554, 1141
TfiI GAWTC 3 cut(s) 8, 512, 1556
TscAI CASTG 3 cut(s) 117, 309, 1544
TseFI GTSAC 3 cut(s) 87, 344, 1564
TseI GCWGC 3 cut(s) 1159, 1256, 1591
Tsp45I GTSAC 3 cut(s) 87, 344, 1564
TspDTI ATGAA 9 cut(s) 10, 273, 396, 441, 647, 675, 892, 1017, 1548
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 3 cut(s) 117, 309, 1544
Tth111I GACNNNGTC 1 cut(s) 52
Vha464I CTTAAG 2 cut(s) 932, 1208
VneI GTGCAC 1 cut(s) 1385
VpaK11BI GGWCC 1 cut(s) 1578
VspI ATTAAT 1 cut(s) 1173
XapI RAATTY 3 cut(s) 145, 460, 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 193
XmnI GAANNNNTTC 2 cut(s) 819, 1185
XspI CTAG 4 cut(s) 296, 744, 1044, 1530
Zsp2I ATGCAT 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.