Ubiquitin carboxyl-terminal hydrolase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G30890 AT4G30890 AT4G30890 |
| fragaria_vesca | FvH4_7g02050 FvH4_7g02050 FvH4_7g02050 |
| malus_domestica | MD02G1296600.v1.1 MD02G1296700.v1.1 MD07G1027400.v1.1 |
| prunus_persica | Prupe.2G027700_v2.0.a1 Prupe.3G154500_v2.0.a1 Prupe.6G151000_v2.0.a1 |
| pyrus_communis | pycom02g24980 pycom02g24990 pycom07g02100 |
| rosa_chinensis | RchiOBHm_Chr1g0319451 |
| rosa_laevigata | RLG00000030484 |
| rosa_multiflora | Rmu_sc0005870.1_g000014 |
| rosa_roxburghii | Rroxscaffold_4G00328480 |
| rosa_rugosa | Rorug01G0027800 |
| rosa_samantha | Rh1AG039900 Rh1BG036700 Rh1CG039100 Rh1DG030800 |
| rosa_wichuraiana | Rw1G003190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1621 |
| Acc36I | ACCTGC | 1 cut(s) | 289 |
| AciI | CCGC | 4 cut(s) | 86, 177, 984, 1128 |
| AclWI | GGATC | 1 cut(s) | 912 |
| AcsI | RAATTY | 4 cut(s) | 130, 158, 722, 823 |
| AcuI | CTGAAG | 5 cut(s) | 60, 497, 632, 1044, 1194 |
| AfaI | GTAC | 3 cut(s) | 316, 1186, 1581 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1493, 1530 |
| AflII | CTTAAG | 4 cut(s) | 220, 818, 926, 1202 |
| AgsI | TTSAA | 9 cut(s) | 196, 438, 525, 744, 809, 1093, 1193, 1308, 1394 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1011, 1549 |
| AjnI | CCWGG | 3 cut(s) | 50, 76, 1037 |
| AluBI | AGCT | 7 cut(s) | 16, 643, 894, 1124, 1178, 1253, 1366 |
| AluI | AGCT | 7 cut(s) | 16, 643, 894, 1124, 1178, 1253, 1366 |
| Alw26I | GTCTC | 5 cut(s) | 41, 425, 721, 770, 998 |
| AlwI | GGATC | 1 cut(s) | 912 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1253 |
| Ama87I | CYCGRG | 1 cut(s) | 773 |
| AoxI | GGCC | 3 cut(s) | 612, 785, 860 |
| ApeKI | GCWGC | 5 cut(s) | 16, 61, 263, 1250, 1366 |
| ApoI | RAATTY | 4 cut(s) | 130, 158, 722, 823 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 813, 1179 |
| AspLEI | GCGC | 3 cut(s) | 202, 532, 963 |
| AspS9I | GGNCC | 3 cut(s) | 613, 1013, 1569 |
| AsuHPI | GGTGA | 5 cut(s) | 66, 167, 179, 929, 1114 |
| AsuII | TTCGAA | 1 cut(s) | 749 |
| AvaI | CYCGRG | 1 cut(s) | 773 |
| AvaII | GGWCC | 2 cut(s) | 1013, 1569 |
| AxyI | CCTNAGG | 1 cut(s) | 675 |
| BauI | CACGAG | 1 cut(s) | 561 |
| BbvI | GCAGC | 5 cut(s) | 3, 48, 275, 1262, 1353 |
| BccI | CCATC | 2 cut(s) | 1226, 1495 |
| BciT130I | CCWGG | 3 cut(s) | 52, 78, 1039 |
| BcoDI | GTCTC | 5 cut(s) | 41, 425, 721, 770, 998 |
| BfaI | CTAG | 2 cut(s) | 20, 735 |
| BfmI | CTRYAG | 1 cut(s) | 608 |
| BfoI | RGCGCY | 1 cut(s) | 203 |
| BfrI | CTTAAG | 4 cut(s) | 220, 818, 926, 1202 |
| BfuAI | ACCTGC | 1 cut(s) | 289 |
| BisI | GCNGC | 5 cut(s) | 17, 62, 264, 1251, 1367 |
| BlsI | GCNGC | 5 cut(s) | 18, 63, 265, 1252, 1368 |
| BmcAI | AGTACT | 1 cut(s) | 1581 |
| Bme1390I | CCNGG | 3 cut(s) | 52, 78, 1039 |
| Bme18I | GGWCC | 2 cut(s) | 1013, 1569 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1011, 1549 |
| BmeT110I | CYCGRG | 1 cut(s) | 773 |
| BmgT120I | GGNCC | 3 cut(s) | 613, 1013, 1569 |
| BmiI | GGNNCC | 1 cut(s) | 1570 |
| BmrFI | CCNGG | 3 cut(s) | 52, 78, 1039 |
| BmsI | GCATC | 8 cut(s) | 293, 751, 865, 900, 1186, 1320, 1501, 1537 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 701, 733 |
| BpmI | CTGGAG | 1 cut(s) | 816 |
| Bpu10I | CCTNAGC | 2 cut(s) | 879, 890 |
| Bpu14I | TTCGAA | 1 cut(s) | 749 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1236 |
| BsaI | GGTCTC | 2 cut(s) | 41, 425 |
| BsaJI | CCNNGG | 2 cut(s) | 77, 1351 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 280, 310 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1493, 1530 |
| Bse118I | RCCGGY | 1 cut(s) | 1523 |
| Bse1I | ACTGG | 1 cut(s) | 784 |
| Bse21I | CCTNAGG | 1 cut(s) | 675 |
| Bse3DI | GCAATG | 1 cut(s) | 392 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1236 |
| BseBI | CCWGG | 3 cut(s) | 52, 78, 1039 |
| BseDI | CCNNGG | 2 cut(s) | 77, 1351 |
| BseGI | GGATG | 2 cut(s) | 317, 997 |
| BseJI | GATNNNNATC | 1 cut(s) | 1236 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1493, 1530 |
| BseMI | GCAATG | 1 cut(s) | 392 |
| BseMII | CTCAG | 3 cut(s) | 227, 893, 1425 |
| BseNI | ACTGG | 1 cut(s) | 784 |
| BseXI | GCAGC | 5 cut(s) | 3, 48, 275, 1262, 1353 |
| BseYI | CCCAGC | 1 cut(s) | 1253 |
| BsgI | GTGCAG | 1 cut(s) | 1200 |
| BshFI | GGCC | 3 cut(s) | 614, 787, 862 |
| BsiHKCI | CYCGRG | 1 cut(s) | 773 |
| BsiSI | CCGG | 2 cut(s) | 855, 1524 |
| BslFI | GGGAC | 2 cut(s) | 1509, 1582 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1493, 1530 |
| BsmAI | GTCTC | 5 cut(s) | 41, 425, 721, 770, 998 |
| BsmBI | CGTCTC | 1 cut(s) | 721 |
| BsmFI | GGGAC | 2 cut(s) | 1509, 1582 |
| BsnI | GGCC | 3 cut(s) | 614, 787, 862 |
| Bso31I | GGTCTC | 2 cut(s) | 41, 425 |
| BsoBI | CYCGRG | 1 cut(s) | 773 |
| Bsp119I | TTCGAA | 1 cut(s) | 749 |
| Bsp143I | GATC | 1 cut(s) | 904 |
| BspACI | CCGC | 4 cut(s) | 86, 177, 984, 1128 |
| BspANI | GGCC | 3 cut(s) | 614, 787, 862 |
| BspCNI | CTCAG | 3 cut(s) | 226, 892, 1426 |
| BspLI | GGNNCC | 1 cut(s) | 1570 |
| BspMAI | CTGCAG | 1 cut(s) | 612 |
| BspMI | ACCTGC | 1 cut(s) | 289 |
| BspPI | GGATC | 1 cut(s) | 912 |
| BspT104I | TTCGAA | 1 cut(s) | 749 |
| BspTI | CTTAAG | 4 cut(s) | 220, 818, 926, 1202 |
| BspTNI | GGTCTC | 2 cut(s) | 41, 425 |
| BsrDI | GCAATG | 1 cut(s) | 392 |
| BsrFI | RCCGGY | 1 cut(s) | 1523 |
| BsrI | ACTGG | 1 cut(s) | 784 |
| BssAI | RCCGGY | 1 cut(s) | 1523 |
| BssECI | CCNNGG | 2 cut(s) | 77, 1351 |
| BssMI | GATC | 1 cut(s) | 904 |
| BssSI | CACGAG | 1 cut(s) | 561 |
| BssT1I | CCWWGG | 1 cut(s) | 1351 |
| Bst2BI | CACGAG | 1 cut(s) | 561 |
| Bst2UI | CCWGG | 3 cut(s) | 52, 78, 1039 |
| Bst4CI | ACNGT | 6 cut(s) | 347, 541, 1009, 1135, 1539, 1573 |
| BstAFI | CTTAAG | 4 cut(s) | 220, 818, 926, 1202 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1330 |
| BstBI | TTCGAA | 1 cut(s) | 749 |
| BstC8I | GCNNGC | 4 cut(s) | 612, 860, 1279, 1593 |
| BstDEI | CTNAG | 8 cut(s) | 12, 213, 495, 675, 879, 890, 1362, 1434 |
| BstF5I | GGATG | 2 cut(s) | 317, 997 |
| BstH2I | RGCGCY | 1 cut(s) | 203 |
| BstHHI | GCGC | 3 cut(s) | 202, 532, 963 |
| BstKTI | GATC | 1 cut(s) | 907 |
| BstMAI | GTCTC | 5 cut(s) | 41, 425, 721, 770, 998 |
| BstMBI | GATC | 1 cut(s) | 904 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 67, 260, 290, 527, 1330, 1356, 1520 |
| BstNI | CCWGG | 3 cut(s) | 52, 78, 1039 |
| BstNSI | RCATGY | 1 cut(s) | 733 |
| BstSCI | CCNGG | 3 cut(s) | 50, 76, 1037 |
| BstSFI | CTRYAG | 1 cut(s) | 608 |
| BstV1I | GCAGC | 5 cut(s) | 3, 48, 275, 1262, 1353 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 350 |
| Bsu36I | CCTNAGG | 1 cut(s) | 675 |
| BsuRI | GGCC | 3 cut(s) | 614, 787, 862 |
| BtsCI | GGATG | 2 cut(s) | 317, 997 |
| BtsIMutI | CAGTG | 2 cut(s) | 537, 1535 |
| BveI | ACCTGC | 1 cut(s) | 289 |
| Cac8I | GCNNGC | 4 cut(s) | 612, 860, 1279, 1593 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1253 |
| CfoI | GCGC | 3 cut(s) | 202, 532, 963 |
| Cfr10I | RCCGGY | 1 cut(s) | 1523 |
| Cfr13I | GGNCC | 3 cut(s) | 613, 1013, 1569 |
| CseI | GACGC | 1 cut(s) | 1539 |
| CsiI | ACCWGGT | 1 cut(s) | 50 |
| Csp6I | GTAC | 3 cut(s) | 315, 1185, 1580 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1377, 1412 |
| CviAII | CATG | 7 cut(s) | 624, 730, 802, 901, 914, 1558, 1586 |
| CviQI | GTAC | 3 cut(s) | 315, 1185, 1580 |
| DdeI | CTNAG | 8 cut(s) | 12, 213, 495, 675, 879, 890, 1362, 1434 |
| DpnI | GATC | 1 cut(s) | 906 |
| DpnII | GATC | 1 cut(s) | 904 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1011, 1549 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1011, 1549 |
| EciI | GGCGGA | 1 cut(s) | 101 |
| Eco130I | CCWWGG | 1 cut(s) | 1351 |
| Eco147I | AGGCCT | 1 cut(s) | 787 |
| Eco31I | GGTCTC | 2 cut(s) | 41, 425 |
| Eco47I | GGWCC | 2 cut(s) | 1013, 1569 |
| Eco57I | CTGAAG | 5 cut(s) | 60, 497, 632, 1044, 1194 |
| Eco81I | CCTNAGG | 1 cut(s) | 675 |
| Eco88I | CYCGRG | 1 cut(s) | 773 |
| EcoO109I | RGGNCCY | 1 cut(s) | 613 |
| EcoRII | CCWGG | 3 cut(s) | 50, 76, 1037 |
| EcoT14I | CCWWGG | 1 cut(s) | 1351 |
| EcoT22I | ATGCAT | 1 cut(s) | 915 |
| ErhI | CCWWGG | 1 cut(s) | 1351 |
| Esp3I | CGTCTC | 1 cut(s) | 721 |
| FaeI | CATG | 7 cut(s) | 627, 733, 805, 904, 917, 1561, 1589 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 668, 700, 801, 833, 1185, 1217 |
| FaqI | GGGAC | 2 cut(s) | 1509, 1582 |
| FatI | CATG | 7 cut(s) | 623, 729, 801, 900, 913, 1557, 1585 |
| FauNDI | CATATG | 1 cut(s) | 1597 |
| Fnu4HI | GCNGC | 5 cut(s) | 17, 62, 264, 1251, 1367 |
| FokI | GGATG | 2 cut(s) | 324, 1004 |
| Fsp4HI | GCNGC | 5 cut(s) | 17, 62, 264, 1251, 1367 |
| FspBI | CTAG | 2 cut(s) | 20, 735 |
| GlaI | GCGC | 3 cut(s) | 201, 531, 962 |
| GluI | GCNGC | 5 cut(s) | 17, 62, 264, 1251, 1367 |
| GsaI | CCCAGC | 1 cut(s) | 1257 |
| GsuI | CTGGAG | 1 cut(s) | 816 |
| HaeII | RGCGCY | 1 cut(s) | 203 |
| HaeIII | GGCC | 3 cut(s) | 614, 787, 862 |
| HapII | CCGG | 2 cut(s) | 855, 1524 |
| HgaI | GACGC | 1 cut(s) | 1539 |
| HhaI | GCGC | 3 cut(s) | 202, 532, 963 |
| Hin1II | CATG | 7 cut(s) | 627, 733, 805, 904, 917, 1561, 1589 |
| Hin6I | GCGC | 3 cut(s) | 200, 530, 961 |
| HinP1I | GCGC | 3 cut(s) | 200, 530, 961 |
| HincII | GTYRAC | 1 cut(s) | 682 |
| HindII | GTYRAC | 1 cut(s) | 682 |
| HindIII | AAGCTT | 1 cut(s) | 1122 |
| HinfI | GANTC | 2 cut(s) | 8, 170 |
| HpaII | CCGG | 2 cut(s) | 855, 1524 |
| HphI | GGTGA | 5 cut(s) | 66, 167, 179, 929, 1114 |
| Hpy166II | GTNNAC | 2 cut(s) | 227, 682 |
| Hpy188I | TCNGA | 6 cut(s) | 40, 300, 516, 721, 909, 1063 |
| Hpy188III | TCNNGA | 9 cut(s) | 443, 579, 650, 773, 775, 833, 881, 1229, 1409 |
| Hpy8I | GTNNAC | 2 cut(s) | 227, 682 |
| Hpy99I | CGWCG | 1 cut(s) | 1555 |
| HpyAV | CCTTC | 9 cut(s) | 76, 407, 511, 626, 803, 929, 1068, 1099, 1252 |
| HpyCH4III | ACNGT | 6 cut(s) | 347, 541, 1009, 1135, 1539, 1573 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 67, 260, 290, 527, 1330, 1356, 1520 |
| HpyF3I | CTNAG | 8 cut(s) | 12, 213, 495, 675, 879, 890, 1362, 1434 |
| Hsp92II | CATG | 7 cut(s) | 627, 733, 805, 904, 917, 1561, 1589 |
| HspAI | GCGC | 3 cut(s) | 200, 530, 961 |
| Kzo9I | GATC | 1 cut(s) | 904 |
| LmnI | GCTCC | 1 cut(s) | 1158 |
| Lsp1109I | GCAGC | 5 cut(s) | 3, 48, 275, 1262, 1353 |
| LweI | GCATC | 8 cut(s) | 293, 751, 865, 900, 1186, 1320, 1501, 1537 |
| MabI | ACCWGGT | 1 cut(s) | 50 |
| MaeI | CTAG | 2 cut(s) | 20, 735 |
| MaeIII | GTNAC | 4 cut(s) | 136, 256, 535, 1270 |
| MalI | GATC | 1 cut(s) | 906 |
| MboI | GATC | 1 cut(s) | 904 |
| MboII | GAAGA | 7 cut(s) | 53, 141, 638, 763, 884, 972, 1205 |
| MfeI | CAATTG | 2 cut(s) | 1088, 1563 |
| MmeI | TCCRAC | 2 cut(s) | 323, 713 |
| MnlI | CCTC | 6 cut(s) | 570, 982, 1076, 1106, 1429, 1613 |
| Mph1103I | ATGCAT | 1 cut(s) | 915 |
| MroXI | GAANNNNTTC | 2 cut(s) | 813, 1179 |
| MslI | CAYNNNNRTG | 1 cut(s) | 348 |
| MspA1I | CMGCKG | 1 cut(s) | 1253 |
| MspCI | CTTAAG | 4 cut(s) | 220, 818, 926, 1202 |
| MspI | CCGG | 2 cut(s) | 855, 1524 |
| MspR9I | CCNGG | 3 cut(s) | 52, 78, 1039 |
| MunI | CAATTG | 2 cut(s) | 1088, 1563 |
| MvaI | CCWGG | 3 cut(s) | 52, 78, 1039 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 67, 260, 290, 527, 1330, 1356, 1520 |
| NdeI | CATATG | 1 cut(s) | 1597 |
| NdeII | GATC | 1 cut(s) | 904 |
| NlaIII | CATG | 7 cut(s) | 627, 733, 805, 904, 917, 1561, 1589 |
| NlaIV | GGNNCC | 1 cut(s) | 1570 |
| NmuCI | GTSAC | 2 cut(s) | 535, 1270 |
| NsiI | ATGCAT | 1 cut(s) | 915 |
| NspI | RCATGY | 1 cut(s) | 733 |
| NspV | TTCGAA | 1 cut(s) | 749 |
| PaeR7I | CTCGAG | 1 cut(s) | 773 |
| PceI | AGGCCT | 1 cut(s) | 787 |
| PdmI | GAANNNNTTC | 2 cut(s) | 813, 1179 |
| PfeI | GAWTC | 2 cut(s) | 8, 170 |
| PflFI | GACNNNGTC | 1 cut(s) | 52 |
| PkrI | GCNGC | 5 cut(s) | 18, 63, 265, 1252, 1368 |
| PsiI | TTATAA | 1 cut(s) | 1621 |
| Psp6I | CCWGG | 3 cut(s) | 50, 76, 1037 |
| PspFI | CCCAGC | 1 cut(s) | 1253 |
| PspGI | CCWGG | 3 cut(s) | 50, 76, 1037 |
| PspN4I | GGNNCC | 1 cut(s) | 1570 |
| PspPI | GGNCC | 3 cut(s) | 613, 1013, 1569 |
| PstI | CTGCAG | 1 cut(s) | 612 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1253 |
| PsyI | GACNNNGTC | 1 cut(s) | 52 |
| PvuII | CAGCTG | 1 cut(s) | 1253 |
| RsaI | GTAC | 3 cut(s) | 316, 1186, 1581 |
| RsaNI | GTAC | 3 cut(s) | 315, 1185, 1580 |
| RseI | CAYNNNNRTG | 1 cut(s) | 348 |
| SatI | GCNGC | 5 cut(s) | 17, 62, 264, 1251, 1367 |
| Sau3AI | GATC | 1 cut(s) | 904 |
| Sau96I | GGNCC | 3 cut(s) | 613, 1013, 1569 |
| SbfI | CCTGCAGG | 1 cut(s) | 612 |
| ScaI | AGTACT | 1 cut(s) | 1581 |
| ScrFI | CCNGG | 3 cut(s) | 52, 78, 1039 |
| SdaI | CCTGCAGG | 1 cut(s) | 612 |
| SexAI | ACCWGGT | 1 cut(s) | 50 |
| SfaNI | GCATC | 8 cut(s) | 293, 751, 865, 900, 1186, 1320, 1501, 1537 |
| SfcI | CTRYAG | 1 cut(s) | 608 |
| Sfr274I | CTCGAG | 1 cut(s) | 773 |
| SfuI | TTCGAA | 1 cut(s) | 749 |
| SinI | GGWCC | 2 cut(s) | 1013, 1569 |
| SlaI | CTCGAG | 1 cut(s) | 773 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 348 |
| SmlI | CTYRAG | 5 cut(s) | 220, 773, 818, 926, 1202 |
| SmoI | CTYRAG | 5 cut(s) | 220, 773, 818, 926, 1202 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 612 |
| SseBI | AGGCCT | 1 cut(s) | 787 |
| SsiI | CCGC | 4 cut(s) | 86, 177, 984, 1128 |
| SspMI | CTAG | 2 cut(s) | 20, 735 |
| StuI | AGGCCT | 1 cut(s) | 787 |
| StyD4I | CCNGG | 3 cut(s) | 50, 76, 1037 |
| StyI | CCWWGG | 1 cut(s) | 1351 |
| TaaI | ACNGT | 6 cut(s) | 347, 541, 1009, 1135, 1539, 1573 |
| TaqI | TCGA | 5 cut(s) | 287, 749, 774, 1240, 1441 |
| TaqII | GACCGA | 1 cut(s) | 1543 |
| TatI | WGTACW | 2 cut(s) | 314, 1579 |
| TfiI | GAWTC | 2 cut(s) | 8, 170 |
| TscAI | CASTG | 2 cut(s) | 544, 1535 |
| TseFI | GTSAC | 2 cut(s) | 535, 1270 |
| TseI | GCWGC | 5 cut(s) | 16, 61, 263, 1250, 1366 |
| Tsp45I | GTSAC | 2 cut(s) | 535, 1270 |
| TspDTI | ATGAA | 4 cut(s) | 258, 381, 886, 1011 |
| TspRI | CASTG | 2 cut(s) | 544, 1535 |
| Tth111I | GACNNNGTC | 1 cut(s) | 52 |
| Vha464I | CTTAAG | 4 cut(s) | 220, 818, 926, 1202 |
| VpaK11BI | GGWCC | 2 cut(s) | 1013, 1569 |
| XapI | RAATTY | 4 cut(s) | 130, 158, 722, 823 |
| XceI | RCATGY | 1 cut(s) | 733 |
| XhoI | CTCGAG | 1 cut(s) | 773 |
| XmnI | GAANNNNTTC | 2 cut(s) | 813, 1179 |
| XspI | CTAG | 2 cut(s) | 20, 735 |
| ZrmI | AGTACT | 1 cut(s) | 1581 |
| Zsp2I | ATGCAT | 1 cut(s) | 915 |