Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007263

Physical Location & Seq

Genomic Coordinates Forward (+)

17037932 .. 17039594

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G154500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTTGAGGCAAAGCGATTGACCTTGGGAGGATTAACAGCGCCATTGTTAGGACTGCTGCAACTACCTTCGCTTTTCGTTTTTGGGTCATTCTCTGAAGACAAGACCAGGTCATTGCTGCAAAAGCAATCACCTGGAAAGGCTGAAAATCCTGTGGAAAAGAATGTATTGCAGTTTGGGTCTATATATTTTGGTACTATAATATCTTCAGGTGAATGTAATGGTGAATCAAGCAGACCACAAAATTCTGTGAAGGGGCTCAGCAAAGTTCAGCCTTTAAGTTCACTTAATAAGCAGAATGAAGTGGAGGCTGTAAAAGCAGCAAATGATAGTTTACCAGCATCTTTAACTACTCCTACAGAGAAGGCGACAACGGATAATATTGATGTAGCTTCATTACCTTTATCCAATAACGAAGGTGGTCTCTCCAATCAATTTCCAAGTCTGGAATTGCAGAACAGAGAGCAGCATGGTCGTGTTGCGGATTTATCAGCTTCTAAGGCTGGATTAGCTCTTGGAGAGTTGCAAAAGGAAAATAATTTCCTAAGAAGCCTTTGGCCAGTAACTAATCCACCTTCAAGTCAAGAACATTTTTTACATCCTCAACTTTTACAAAAGCCTCTCCACCCATTCCTTGCTCGAGGGTATTTTGACGATGTAGGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

UCH

Protein Analysis

223

Amino Acids

23.97

Weight (kDa)

6.1

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30890 AT4G30890 AT4G30890
fragaria_vesca	FvH4_7g02050 FvH4_7g02050 FvH4_7g02050
malus_domestica	MD02G1296600.v1.1 MD02G1296700.v1.1 MD07G1027400.v1.1
prunus_persica	Prupe.2G027700_v2.0.a1 Prupe.3G154500_v2.0.a1 Prupe.6G151000_v2.0.a1
pyrus_communis	pycom02g24980 pycom02g24990 pycom07g02100
rosa_chinensis	RchiOBHm_Chr1g0319451
rosa_laevigata	RLG00000030484
rosa_multiflora	Rmu_sc0005870.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328480
rosa_rugosa	Rorug01G0027800
rosa_samantha	Rh1AG039900 Rh1BG036700 Rh1CG039100 Rh1DG030800
rosa_wichuraiana	Rw1G003190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	2 cut(s)	117, 192
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	579
AjnI	CCWGG	2 cut(s)	107, 133
AluBI	AGCT	3 cut(s)	392, 494, 512
AluI	AGCT	3 cut(s)	392, 494, 512
Alw26I	GTCTC	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	639
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	4 cut(s)	58, 118, 320, 466
ApoI	RAATTY	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	123, 224, 236
AvaI	CYCGRG	1 cut(s)	639
BalI	TGGCCA	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	4 cut(s)	45, 105, 332, 478
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	2 cut(s)	109, 135
BcoDI	GTCTC	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	4 cut(s)	59, 119, 321, 467
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	4 cut(s)	60, 120, 322, 468
Bme1390I	CCNGG	2 cut(s)	109, 135
BmeT110I	CYCGRG	1 cut(s)	639
BmrFI	CCNGG	2 cut(s)	109, 135
BmsI	GCATC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	560
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	109, 135
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	560
BseXI	GCAGC	4 cut(s)	45, 105, 332, 478
BshFI	GGCC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	639
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	559
Bso31I	GGTCTC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	639
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	2 cut(s)	109, 135
BstDEI	CTNAG	3 cut(s)	260, 498, 545
BstF5I	GGATG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	428
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 317, 500, 509
BstNI	CCWGG	2 cut(s)	109, 135
BstSCI	CCNGG	2 cut(s)	107, 133
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	45, 105, 332, 478
BstV2I	GAAGAC	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	598
CfoI	GCGC	1 cut(s)	43
CsiI	ACCWGGT	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	1 cut(s)	470
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	3 cut(s)	260, 498, 545
EaeI	YGGCCR	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	117, 192
Eco88I	CYCGRG	1 cut(s)	639
EcoRII	CCWGG	2 cut(s)	107, 133
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	473
FaiI	YATR	4 cut(s)	185, 187, 200, 471
FatI	CATG	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	59, 119, 321, 467
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	4 cut(s)	59, 119, 321, 467
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	4 cut(s)	59, 119, 321, 467
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	559
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	473
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	227
HphI	GGTGA	3 cut(s)	123, 224, 236
Hpy166II	GTNNAC	2 cut(s)	284, 335
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	446, 584
Hpy8I	GTNNAC	2 cut(s)	284, 335
HpyAV	CCTTC	5 cut(s)	78, 247, 358, 410, 585
HpyCH4V	TGCA	5 cut(s)	61, 121, 172, 454, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 317, 500, 509
HpyF3I	CTNAG	3 cut(s)	260, 498, 545
Hsp92II	CATG	1 cut(s)	473
HspAI	GCGC	1 cut(s)	41
Lsp1109I	GCAGC	4 cut(s)	45, 105, 332, 478
LweI	GCATC	1 cut(s)	350
MabI	ACCWGGT	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	562
MboII	GAAGA	2 cut(s)	110, 198
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	4 cut(s)	244, 434, 449, 538
MluNI	TGGCCA	1 cut(s)	559
MnlI	CCTC	5 cut(s)	23, 301, 612, 630, 635
Mox20I	TGGCCA	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	559
MseI	TTAA	4 cut(s)	35, 278, 288, 347
MslI	CAYNNNNRTG	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	559
MspR9I	CCNGG	2 cut(s)	109, 135
MvaI	CCWGG	2 cut(s)	109, 135
MwoI	GCNNNNNNNGC	4 cut(s)	124, 317, 500, 509
NlaIII	CATG	1 cut(s)	473
PaeR7I	CTCGAG	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	227
PflFI	GACNNNGTC	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	60, 120, 322, 468
Psp6I	CCWGG	2 cut(s)	107, 133
PspGI	CCWGG	2 cut(s)	107, 133
PspXI	VCTCGAGB	1 cut(s)	639
PsrI	GAACNNNNNNTAC	2 cut(s)	579, 611
PsyI	GACNNNGTC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	4 cut(s)	35, 278, 288, 347
SatI	GCNGC	4 cut(s)	59, 119, 321, 467
ScrFI	CCNGG	2 cut(s)	109, 135
SduI	GDGCHC	1 cut(s)	261
SexAI	ACCWGGT	1 cut(s)	107
SfaNI	GCATC	1 cut(s)	350
SfcI	CTRYAG	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	639
SlaI	CTCGAG	1 cut(s)	639
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	639
SmoI	CTYRAG	1 cut(s)	639
Sse9I	AATT	4 cut(s)	244, 434, 449, 538
SsiI	CCGC	1 cut(s)	482
SspI	AATATT	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	107, 133
StyI	CCWWGG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	640
TasI	AATT	4 cut(s)	244, 434, 449, 538
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	4 cut(s)	35, 278, 288, 347
Tru9I	TTAA	4 cut(s)	35, 278, 288, 347
TseI	GCWGC	4 cut(s)	58, 118, 320, 466
TspDTI	ATGAA	2 cut(s)	315, 384
TspGWI	ACGGA	1 cut(s)	389
Tth111I	GACNNNGTC	1 cut(s)	109
XapI	RAATTY	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.