Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007263

Physical Location & Seq

Genomic Coordinates Reverse (-)

23038687 .. 23040946

Gene Structure 2260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24980.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAGTAGTATAAATTTTGTTACTGCAAAATCTTCGGTTCAATTTAATGGCGAATCAAGCGGACAGAAAAGTTCTTTGAAAGCGCCCACCAAACTTCAGCCGTTAAGTTCACTTAATAAGCAGGATGAAGTTAAGGCTGGAAAAGCAGTAGATGGTAATTTACCTGTATCGTCAGCAACTCCGGCAGAGAATGGATGCACTGATAATTATGTTAATTGTTCTGCCCATAGTAAAGGTGTGAAAGAGGTGACAACTAATGAAGTTAACTTAACCTCTTTGCCTTTATCCAAGGACGAAGGTGGTCTCTCCAATCAATTTTCAAGTCTGGAATTGCAGAATAGAGGGCAGAATGGCAGTGTTGATGATTTGTCTGTTTCTAAGATTAAGGGGGAACTACAGAAGGCTTCAATTGCGCCTGTTACAGTTTCTAAAAGCTTATTGCCTCGTGGTCTAATCAATTCAGGAAATCTATGCTTTCTAAATGCAACCCTGCAGGCTCTTCTATCCTGCTCTCCGTTTGTTCAGCTTCTGCAGGAATTGAGAACTCTTGAAGTACCTAAGGTTGGCTATCCGACATTGAGTGCATTTGCAGAGTTCGTGTCTGAATTTGACATGCCTTGTGGTTCAAGTTCGAAGGACAAAGATACAAGTGTTCTCAAGACTGGTAGGCCTTTTAGCCCTGCCATGTTTGAAGGCGTTCTTAAAAATTTCACTCCAGATGTTCCGACTAGCATCTCCGGCAGGCCAAGACAAGAGGATGCTCAGGAGTTCCTTAGCTTTATCATGGATCAGATACATGATGAATTACTTAAGCTTGAAGGACAATCCCCAAGCATTAACGGGTGCAAATCATCTCTTATATCTTCAGCAGAAGATGATGAATGGGAGAAAGTTGGCCCGAAGAATACATCTGCAGTAACCAGGACACAGAGTTTTGTTCCTTCAGAATTGAGTGATATTTTTGGAGGACAATTGAGAAGTGTGGTGAAGGCAAGAGGTGTGGAAATAAAGCTTCCGCTACTGTTCAGCCATATTTATTGCTCCACCTTGATATTTACCCTGACGCTGTTCGTACCATTGAAGATGCACTTAAGTTGTATTCTGCACCAGAAACGCTTGAGGGGTATCGAACATCAGCAGCTGGGAATGCCGGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

UCH

Protein Analysis

387

Amino Acids

41.73

Weight (kDa)

6.61

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30890 AT4G30890 AT4G30890
fragaria_vesca	FvH4_7g02050 FvH4_7g02050 FvH4_7g02050
malus_domestica	MD02G1296600.v1.1 MD02G1296700.v1.1 MD07G1027400.v1.1
prunus_persica	Prupe.2G027700_v2.0.a1 Prupe.3G154500_v2.0.a1 Prupe.6G151000_v2.0.a1
pyrus_communis	pycom02g24980 pycom02g24990 pycom07g02100
rosa_chinensis	RchiOBHm_Chr1g0319451
rosa_laevigata	RLG00000030484
rosa_multiflora	Rmu_sc0005870.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328480
rosa_rugosa	Rorug01G0027800
rosa_samantha	Rh1AG039900 Rh1BG036700 Rh1CG039100 Rh1DG030800
rosa_wichuraiana	Rw1G003190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 1016
AclWI	GGATC	1 cut(s)	795
AcsI	RAATTY	3 cut(s)	13, 605, 706
AcuI	CTGAAG	3 cut(s)	80, 849, 927
AfaI	GTAC	2 cut(s)	555, 1074
AfiI	CCNNNNNNNGG	1 cut(s)	563
AflII	CTTAAG	2 cut(s)	809, 1090
AgsI	TTSAA	9 cut(s)	41, 79, 321, 408, 551, 627, 692, 818, 1081
AjnI	CCWGG	1 cut(s)	920
AluBI	AGCT	6 cut(s)	435, 526, 777, 814, 1012, 1141
AluI	AGCT	6 cut(s)	435, 526, 777, 814, 1012, 1141
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	795
AlwNI	CAGNNNCTG	2 cut(s)	529, 1141
AoxI	GGCC	3 cut(s)	668, 743, 895
ApeKI	GCWGC	1 cut(s)	1138
ApoI	RAATTY	3 cut(s)	13, 605, 706
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	2 cut(s)	85, 415
AspS9I	GGNCC	1 cut(s)	896
AsuHPI	GGTGA	2 cut(s)	259, 997
AsuII	TTCGAA	1 cut(s)	632
AxyI	CCTNAGG	1 cut(s)	558
BaeI	ACNNNNGTAYC	2 cut(s)	636, 669
BauI	CACGAG	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	1150
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BciT130I	CCWGG	1 cut(s)	922
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	4 cut(s)	395, 491, 530, 912
BfoI	RGCGCY	1 cut(s)	86
BfrI	CTTAAG	2 cut(s)	809, 1090
BisI	GCNGC	1 cut(s)	1139
BlsI	GCNGC	1 cut(s)	1140
Bme1390I	CCNGG	1 cut(s)	922
BmgT120I	GGNCC	1 cut(s)	896
BmrFI	CCNGG	1 cut(s)	922
BmsI	GCATC	4 cut(s)	185, 741, 748, 1074
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	2 cut(s)	762, 773
Bpu14I	TTCGAA	1 cut(s)	632
BpuEI	CTTGAG	2 cut(s)	641, 1138
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse118I	RCCGGY	1 cut(s)	1150
Bse1I	ACTGG	1 cut(s)	667
Bse21I	CCTNAGG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	922
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	130, 200, 763
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMII	CTCAG	1 cut(s)	776
BseNI	ACTGG	1 cut(s)	667
BseXI	GCAGC	1 cut(s)	1150
BseYI	CCCAGC	1 cut(s)	1141
BsgI	GTGCAG	1 cut(s)	1088
BshFI	GGCC	3 cut(s)	670, 745, 897
BsiSI	CCGG	3 cut(s)	182, 738, 1151
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	1152
BsnI	GGCC	3 cut(s)	670, 745, 897
Bso31I	GGTCTC	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	632
Bsp143I	GATC	1 cut(s)	787
BspACI	CCGC	2 cut(s)	60, 1016
BspANI	GGCC	3 cut(s)	670, 745, 897
BspCNI	CTCAG	1 cut(s)	775
BspMAI	CTGCAG	3 cut(s)	495, 534, 916
BspPI	GGATC	1 cut(s)	795
BspQI	GCTCTTC	1 cut(s)	504
BspT104I	TTCGAA	1 cut(s)	632
BspTI	CTTAAG	2 cut(s)	809, 1090
BspTNI	GGTCTC	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	1150
BsrI	ACTGG	1 cut(s)	667
BssAI	RCCGGY	1 cut(s)	1150
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	1 cut(s)	787
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	922
Bst4CI	ACNGT	2 cut(s)	424, 1023
Bst6I	CTCTTC	1 cut(s)	504
BstAFI	CTTAAG	2 cut(s)	809, 1090
BstBI	TTCGAA	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	495, 743
BstDEI	CTNAG	4 cut(s)	378, 558, 762, 773
BstF5I	GGATG	3 cut(s)	130, 200, 763
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	85, 415
BstKTI	GATC	1 cut(s)	790
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	787
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 143, 182, 410, 738, 1147
BstNI	CCWGG	1 cut(s)	922
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	920
BstSFI	CTRYAG	4 cut(s)	395, 491, 530, 912
BstV1I	GCAGC	1 cut(s)	1150
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	670, 745, 897
BtsCI	GGATG	3 cut(s)	130, 200, 763
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	198, 361
Cac8I	GCNNGC	2 cut(s)	495, 743
CaiI	CAGNNNCTG	2 cut(s)	529, 1141
CfoI	GCGC	2 cut(s)	85, 415
Cfr10I	RCCGGY	1 cut(s)	1150
Cfr13I	GGNCC	1 cut(s)	896
CseI	GACGC	1 cut(s)	1072
Csp6I	GTAC	2 cut(s)	554, 1073
CspCI	CAANNNNNGTGG	2 cut(s)	981, 1016
CviAII	CATG	4 cut(s)	613, 685, 784, 797
CviQI	GTAC	2 cut(s)	554, 1073
DdeI	CTNAG	4 cut(s)	378, 558, 762, 773
DpnI	GATC	1 cut(s)	789
DpnII	GATC	1 cut(s)	787
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	670
Eco31I	GGTCTC	1 cut(s)	308
Eco57I	CTGAAG	3 cut(s)	80, 849, 927
Eco81I	CCTNAGG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	920
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	4 cut(s)	616, 688, 787, 800
FalI	AAGNNNNNCTT	4 cut(s)	684, 716, 1073, 1105
FatI	CATG	4 cut(s)	612, 684, 783, 796
Fnu4HI	GCNGC	1 cut(s)	1139
FokI	GGATG	3 cut(s)	137, 207, 770
Fsp4HI	GCNGC	1 cut(s)	1139
FspBI	CTAG	1 cut(s)	729
GlaI	GCGC	2 cut(s)	84, 414
GluI	GCNGC	1 cut(s)	1139
GsaI	CCCAGC	1 cut(s)	1145
GsuI	CTGGAG	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	670, 745, 897
HapII	CCGG	3 cut(s)	182, 738, 1151
HgaI	GACGC	1 cut(s)	1072
HhaI	GCGC	2 cut(s)	85, 415
Hin1II	CATG	4 cut(s)	616, 688, 787, 800
Hin6I	GCGC	2 cut(s)	83, 413
HinP1I	GCGC	2 cut(s)	83, 413
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	3 cut(s)	433, 812, 1010
HinfI	GANTC	1 cut(s)	53
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	3 cut(s)	182, 738, 1151
HphI	GGTGA	2 cut(s)	259, 997
Hpy166II	GTNNAC	2 cut(s)	110, 265
Hpy188I	TCNGA	5 cut(s)	573, 604, 726, 792, 946
Hpy188III	TCNNGA	6 cut(s)	326, 462, 548, 658, 716, 764
Hpy8I	GTNNAC	2 cut(s)	110, 265
HpyAV	CCTTC	7 cut(s)	290, 394, 628, 686, 812, 951, 982
HpyCH4III	ACNGT	2 cut(s)	424, 1023
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 143, 182, 410, 738, 1147
HpyF3I	CTNAG	4 cut(s)	378, 558, 762, 773
Hsp92II	CATG	4 cut(s)	616, 688, 787, 800
HspAI	GCGC	2 cut(s)	83, 413
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	787
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	1 cut(s)	1046
Lsp1109I	GCAGC	1 cut(s)	1150
LweI	GCATC	4 cut(s)	185, 741, 748, 1074
MaeI	CTAG	1 cut(s)	729
MaeIII	GTNAC	4 cut(s)	19, 247, 418, 916
MalI	GATC	1 cut(s)	789
MboI	GATC	1 cut(s)	787
MboII	GAAGA	6 cut(s)	24, 491, 855, 884, 913, 1093
MfeI	CAATTG	2 cut(s)	408, 971
MmeI	TCCRAC	2 cut(s)	596, 749
MnlI	CCTC	8 cut(s)	238, 283, 335, 453, 748, 959, 989, 1113
MroXI	GAANNNNTTC	1 cut(s)	696
MspA1I	CMGCKG	1 cut(s)	1141
MspCI	CTTAAG	2 cut(s)	809, 1090
MspI	CCGG	3 cut(s)	182, 738, 1151
MspR9I	CCNGG	1 cut(s)	922
MunI	CAATTG	2 cut(s)	408, 971
Mva1269I	GAATGC	1 cut(s)	1152
MvaI	CCWGG	1 cut(s)	922
MwoI	GCNNNNNNNGC	6 cut(s)	57, 143, 182, 410, 738, 1147
NdeII	GATC	1 cut(s)	787
NlaIII	CATG	4 cut(s)	616, 688, 787, 800
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	616
NspV	TTCGAA	1 cut(s)	632
PceI	AGGCCT	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	504
PctI	GAATGC	1 cut(s)	1152
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	1140
Psp6I	CCWGG	1 cut(s)	920
PspFI	CCCAGC	1 cut(s)	1141
PspGI	CCWGG	1 cut(s)	920
PspPI	GGNCC	1 cut(s)	896
PstI	CTGCAG	3 cut(s)	495, 534, 916
PstNI	CAGNNNCTG	2 cut(s)	529, 1141
PvuII	CAGCTG	1 cut(s)	1141
RsaI	GTAC	2 cut(s)	555, 1074
RsaNI	GTAC	2 cut(s)	554, 1073
SapI	GCTCTTC	1 cut(s)	504
SatI	GCNGC	1 cut(s)	1139
Sau3AI	GATC	1 cut(s)	787
Sau96I	GGNCC	1 cut(s)	896
SbfI	CCTGCAGG	1 cut(s)	495
ScrFI	CCNGG	1 cut(s)	922
SdaI	CCTGCAGG	1 cut(s)	495
SfaNI	GCATC	4 cut(s)	185, 741, 748, 1074
SfcI	CTRYAG	4 cut(s)	395, 491, 530, 912
SfuI	TTCGAA	1 cut(s)	632
SmlI	CTYRAG	4 cut(s)	656, 809, 1090, 1117
SmoI	CTYRAG	4 cut(s)	656, 809, 1090, 1117
Sse8387I	CCTGCAGG	1 cut(s)	495
SseBI	AGGCCT	1 cut(s)	670
SsiI	CCGC	2 cut(s)	60, 1016
SspMI	CTAG	1 cut(s)	729
StuI	AGGCCT	1 cut(s)	670
StyD4I	CCNGG	1 cut(s)	920
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	424, 1023
TaqI	TCGA	2 cut(s)	632, 1128
TfiI	GAWTC	1 cut(s)	53
TscAI	CASTG	2 cut(s)	205, 361
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	1138
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	4 cut(s)	141, 273, 816, 894
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	205, 361
Vha464I	CTTAAG	2 cut(s)	809, 1090
XapI	RAATTY	3 cut(s)	13, 605, 706
XceI	RCATGY	1 cut(s)	616
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.