Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007263

Physical Location & Seq

Genomic Coordinates Forward (+)

13070244 .. 13072562

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G151000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGTGATTCTAAGCTATTCGTTTTTGGGTCATTCTCTGAAGATGAGACCAGGTCATTGCTGCAAAAGCAATCACCTGGGAAGGCTGAAAAGCCTTTGGAAAAGAATGTATTGCAGTTTGGGTCTATAAATTTTGTTACTAAAATATCTTCGGGTGAATGTAATGGTGAATCAAGCAGACCACAAAATTCTGTGAAAGGGCTCAGCAAAGTTCAGCCTTTAAGTTCACTTAATAAGCCGAATGAAGTGGAGGCTGTAAAAGCAGCAAATGATAGTTTACCAGCATCTTTAACTACTCCTACAGAGAATGGATGTACTGATAATTATAAAAATGGTTCTGCCCATAGTAATGGCGTGACAGAGGCGACAATGGATAATCTTGATGTAGCTTCTTTACCTTTATCCAATAACGCAGGTGGTCTCTCCAATCAATTTTCAAGTCTGGAATTGCAGAACAGAGAGCAGAATGGTCGTGTTGATGATTTATCAGCTTCTAAGAGGAAAGACGAACTTTTTTTTAGAGAAGGGTGGGTGACTATCAAAAAGCATTATGTCAGCCCTCCAAGGTGGTGGAAAAAATTTCATCTTCAAGATGGACGCAGACTTATAGTCATCAATTTGTTGCAACTTCCTCCAGCATTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

UCH

Protein Analysis

216

Amino Acids

23.73

Weight (kDa)

8.48

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30890 AT4G30890 AT4G30890
fragaria_vesca	FvH4_7g02050 FvH4_7g02050 FvH4_7g02050
malus_domestica	MD02G1296600.v1.1 MD02G1296700.v1.1 MD07G1027400.v1.1
prunus_persica	Prupe.2G027700_v2.0.a1 Prupe.3G154500_v2.0.a1 Prupe.6G151000_v2.0.a1
pyrus_communis	pycom02g24980 pycom02g24990 pycom07g02100
rosa_chinensis	RchiOBHm_Chr1g0319451
rosa_laevigata	RLG00000030484
rosa_multiflora	Rmu_sc0005870.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328480
rosa_rugosa	Rorug01G0027800
rosa_samantha	Rh1AG039900 Rh1BG036700 Rh1CG039100 Rh1DG030800
rosa_wichuraiana	Rw1G003190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AarI	CACCTGC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	404
AcsI	RAATTY	3 cut(s)	130, 187, 578
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	438, 590
AhdI	GACNNNNNGTC	1 cut(s)	608
AjnI	CCWGG	2 cut(s)	50, 76
AluBI	AGCT	3 cut(s)	16, 389, 491
AluI	AGCT	3 cut(s)	16, 389, 491
Alw26I	GTCTC	2 cut(s)	41, 425
ApeKI	GCWGC	2 cut(s)	61, 263
ApoI	RAATTY	3 cut(s)	130, 187, 578
AsuHPI	GGTGA	4 cut(s)	66, 167, 179, 544
BanII	GRGCYC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	48, 275
BccI	CCATC	1 cut(s)	587
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	2 cut(s)	52, 78
BcoDI	GTCTC	2 cut(s)	41, 425
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	2 cut(s)	62, 264
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	2 cut(s)	63, 265
Bme1390I	CCNGG	2 cut(s)	52, 78
BmeRI	GACNNNNNGTC	1 cut(s)	608
BmrFI	CCNGG	2 cut(s)	52, 78
BmsI	GCATC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	618
Bpu1102I	GCTNAGC	1 cut(s)	203
BsaI	GGTCTC	2 cut(s)	41, 425
BsaJI	CCNNGG	2 cut(s)	77, 563
Bse3DI	GCAATG	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	52, 78
BseDI	CCNNGG	2 cut(s)	77, 563
BseGI	GGATG	1 cut(s)	317
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	48, 275
BsmAI	GTCTC	2 cut(s)	41, 425
Bso31I	GGTCTC	2 cut(s)	41, 425
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp1720I	GCTNAGC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	404
BspTNI	GGTCTC	2 cut(s)	41, 425
BsrDI	GCAATG	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	77, 563
BssT1I	CCWWGG	1 cut(s)	563
Bst2UI	CCWGG	2 cut(s)	52, 78
BstDEI	CTNAG	3 cut(s)	12, 203, 495
BstF5I	GGATG	1 cut(s)	317
BstMAI	GTCTC	2 cut(s)	41, 425
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 260
BstNI	CCWGG	2 cut(s)	52, 78
BstSCI	CCNGG	2 cut(s)	50, 76
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	48, 275
BstXI	CCANNNNNNTGG	2 cut(s)	350, 570
BtsCI	GGATG	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	404
CseI	GACGC	1 cut(s)	606
CsiI	ACCWGGT	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	315
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	3 cut(s)	12, 203, 495
DriI	GACNNNNNGTC	1 cut(s)	608
Eam1105I	GACNNNNNGTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	563
Eco24I	GRGCYC	1 cut(s)	204
Eco31I	GGTCTC	2 cut(s)	41, 425
Eco57I	CTGAAG	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	50, 76
EcoT14I	CCWWGG	1 cut(s)	563
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	563
FaiI	YATR	6 cut(s)	128, 327, 345, 552, 608, 643
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
Fnu4HI	GCNGC	2 cut(s)	62, 264
FokI	GGATG	1 cut(s)	324
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	62, 264
GluI	GCNGC	2 cut(s)	62, 264
GsuI	CTGGAG	1 cut(s)	618
HgaI	GACGC	1 cut(s)	606
HinfI	GANTC	2 cut(s)	8, 170
HphI	GGTGA	4 cut(s)	66, 167, 179, 544
Hpy166II	GTNNAC	2 cut(s)	227, 278
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	3 cut(s)	380, 443, 590
Hpy8I	GTNNAC	2 cut(s)	227, 278
HpyAV	CCTTC	2 cut(s)	76, 518
HpyCH4V	TGCA	4 cut(s)	64, 115, 451, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 260
HpyF3I	CTNAG	3 cut(s)	12, 203, 495
LpnPI	CCDG	7 cut(s)	37, 63, 64, 90, 294, 399, 428
Lsp1109I	GCAGC	2 cut(s)	48, 275
LweI	GCATC	1 cut(s)	293
MabI	ACCWGGT	1 cut(s)	50
MaeIII	GTNAC	3 cut(s)	136, 355, 532
MboII	GAAGA	3 cut(s)	53, 141, 578
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	7 cut(s)	130, 187, 322, 431, 446, 578, 616
MnlI	CCTC	5 cut(s)	244, 355, 492, 570, 642
MseI	TTAA	3 cut(s)	221, 231, 290
MslI	CAYNNNNRTG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	52, 78
MvaI	CCWGG	2 cut(s)	52, 78
MwoI	GCNNNNNNNGC	2 cut(s)	67, 260
NmuCI	GTSAC	2 cut(s)	355, 532
PaqCI	CACCTGC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	8, 170
PflFI	GACNNNGTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	63, 265
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	50, 76
PspGI	CCWGG	2 cut(s)	50, 76
PsyI	GACNNNGTC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	221, 231, 290
SatI	GCNGC	2 cut(s)	62, 264
ScrFI	CCNGG	2 cut(s)	52, 78
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	8 cut(s)	18, 56, 79, 391, 400, 418, 493, 569
SexAI	ACCWGGT	1 cut(s)	50
SfaNI	GCATC	1 cut(s)	293
SfcI	CTRYAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	7 cut(s)	130, 187, 322, 431, 446, 578, 616
StyD4I	CCNGG	2 cut(s)	50, 76
StyI	CCWWGG	1 cut(s)	563
TasI	AATT	7 cut(s)	130, 187, 322, 431, 446, 578, 616
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	8, 170
Tru1I	TTAA	3 cut(s)	221, 231, 290
Tru9I	TTAA	3 cut(s)	221, 231, 290
TseFI	GTSAC	2 cut(s)	355, 532
TseI	GCWGC	2 cut(s)	61, 263
Tsp45I	GTSAC	2 cut(s)	355, 532
TspDTI	ATGAA	2 cut(s)	258, 572
Tth111I	GACNNNGTC	1 cut(s)	52
XapI	RAATTY	3 cut(s)	130, 187, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.