Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007263

Physical Location & Seq

Genomic Coordinates Reverse (-)

23045605 .. 23049160

Gene Structure 3556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24990.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGAGTGATTCTAAGTTACTAGTGTTTGGGTCATTCTCTGAAGACGAGACCAGGTCATTGCTGCTAAAGCAATCACCTGTCAAGGGCCTCAAGGCTGAGAAGCCTGTGGAGAAGAATGTATTGCAGTTTGGGTCTATAAATTTTGTTACTGCAAAACCTTCGGTTCAATTTAATGGCGAATCAAGCGGACAGAAAAGTTCTTTGAATGCGCCCACCAAACTTCAGCCGTTAATTTCACTTAATAAGCAGGATGAAGTTAAGGCTGTAAAAGCAGTAGATGGTAATTTACCTGTATCGTCAGCAACTCCAGCAGAGAATGGATGTACTGATAATTATGTTAATTGTTCTGCCCATAGTAATGGTGTTCAAGAGGTGACAACTGATAATATTAACTTAACCTCTTTGCCTTTATCCAAGGATGAAGGTGTTCTCTCCAATCAATTTTCAAGTCTGGAATTGCAGAATAGAGAGCAGAATGGCAGTGTTGATGATTTGTCTGTTTCTAAGATTAAGGGGGAACTACAGAAGGCTTCAAATGCGCCTGTTACAGTTTCTAAAAGCTTATTGCCTCGTGGTCTAATCAATTCAGGAAATCTATGCTTTCTAAATGCAACCCTGCAGGCTCTTCTATCCTGCTCTCCTTTTGTTCAGCTTCTTCAGGAATTGAGAACTCGTGAAGTACCTAAGGTTGGCTATCCGACATTGAGTGCATTTGCAGAGTTCGTGTCTGAATTTGACATGCCTAGTGGTTCAAGTTCGAAGGACAAAGATACAAGTGTTCTCGAGACTGGTAGGCCTTTTAGCCCTGCCATGTTTGAAGGCGTTCTTAAAAATTTCACTCCAGATGTTCCGACTAGCATCTCCGGCAGGCCAAGACAAGAGGATGCTCAGGAGTTCCTTAGCTTTATCATGGATCAGATGCATGATGAATTACTTAAGCTTGAAGGACAATCCCCAAGCATTAACGGGCGTAAATCATCTCTTATATCTTCAGCAGAAGATGATGAATGGGAGACAGTTGGCCCGAAGAATACATCTGCAGTAACCAGGACACAGAGTTTTGTTCCTTCAGAATTGAGTGATATTTTTGGAGGACAATCGAGAAGTGTGGTGAAGGCAAGAGGAAATAAAGCTTCCGCTACTGTTCAGCCATATTTATTGCTCCACCTTGATATTTACCCTGACGCTGTTTGTACCATTGAAGATGCACTTAAGTTGTATTCTGCACCAGAAACTCTTGAGGGGTATCGAACATCAGCAGCTGGGAAGGCCGGTATTGTGACTGCAACCAAATCCATACAGATAAAGACACTTTCAAAGATAATGATATTGCACTTGAAGCGTTTTGGTTATGGAAGTCAAGGAAGCACTAAGCTGAATAAACCTGTGCATTTTCCACTTGAATTGGTGTTGGGCCGTGAATTGCTTGTTTCTCCAAATACTGAGGGTCGAAAATACAAACTCGTTGCTACAATAACTCATCACGGGAGCGAGCCGTCAAAGGGGCATTATACAACTGATGCTCTCTATGCCAATGGTCAGTGGCTACGCTTTAATGATGCTTCGGTCACGGCAATTGGGACTGGTAAAGTATTGCATAACCAGGCATATGTCCTCATCTACAAACAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

UCH

Protein Analysis

545

Amino Acids

58.95

Weight (kDa)

6.78

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30890 AT4G30890 AT4G30890
fragaria_vesca	FvH4_7g02050 FvH4_7g02050 FvH4_7g02050
malus_domestica	MD02G1296600.v1.1 MD02G1296700.v1.1 MD07G1027400.v1.1
prunus_persica	Prupe.2G027700_v2.0.a1 Prupe.3G154500_v2.0.a1 Prupe.6G151000_v2.0.a1
pyrus_communis	pycom02g24980 pycom02g24990 pycom07g02100
rosa_chinensis	RchiOBHm_Chr1g0319451
rosa_laevigata	RLG00000030484
rosa_multiflora	Rmu_sc0005870.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328480
rosa_rugosa	Rorug01G0027800
rosa_samantha	Rh1AG039900 Rh1BG036700 Rh1CG039100 Rh1DG030800
rosa_wichuraiana	Rw1G003190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	186, 1137
AclWI	GGATC	1 cut(s)	921
AcsI	RAATTY	3 cut(s)	139, 731, 832
AcuI	CTGAAG	5 cut(s)	60, 206, 641, 975, 1053
AfaI	GTAC	3 cut(s)	325, 681, 1195
AfiI	CCNNNNNNNGG	3 cut(s)	83, 689, 1502
AflII	CTTAAG	2 cut(s)	935, 1211
AhlI	ACTAGT	1 cut(s)	19
AjnI	CCWGG	3 cut(s)	50, 1046, 1602
AluBI	AGCT	7 cut(s)	561, 652, 903, 940, 1133, 1262, 1375
AluI	AGCT	7 cut(s)	561, 652, 903, 940, 1133, 1262, 1375
Alw26I	GTCTC	3 cut(s)	41, 779, 1007
AlwI	GGATC	1 cut(s)	921
AlwNI	CAGNNNCTG	1 cut(s)	1262
Ama87I	CYCGRG	1 cut(s)	782
AoxI	GGCC	6 cut(s)	85, 794, 869, 1021, 1269, 1414
ApeKI	GCWGC	2 cut(s)	61, 1259
ApoI	RAATTY	3 cut(s)	139, 731, 832
Asp700I	GAANNNNTTC	2 cut(s)	426, 822
AspLEI	GCGC	2 cut(s)	211, 541
AspS9I	GGNCC	3 cut(s)	85, 1022, 1414
AsuHPI	GGTGA	3 cut(s)	66, 385, 1123
AsuII	TTCGAA	1 cut(s)	758
AvaI	CYCGRG	1 cut(s)	782
AxyI	CCTNAGG	1 cut(s)	684
BaeI	ACNNNNGTAYC	2 cut(s)	762, 795
BauI	CACGAG	2 cut(s)	570, 672
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	48, 1271
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	4 cut(s)	211, 1401, 1480, 1587
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BciT130I	CCWGG	3 cut(s)	52, 1048, 1604
BcoDI	GTCTC	3 cut(s)	41, 779, 1007
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	3 cut(s)	20, 744, 855
BfmI	CTRYAG	3 cut(s)	521, 617, 1038
BfrI	CTTAAG	2 cut(s)	935, 1211
BisI	GCNGC	2 cut(s)	62, 1260
BlsI	GCNGC	2 cut(s)	63, 1261
Bme1390I	CCNGG	3 cut(s)	52, 1048, 1604
BmeT110I	CYCGRG	1 cut(s)	782
BmgT120I	GGNCC	3 cut(s)	85, 1022, 1414
BmrFI	CCNGG	3 cut(s)	52, 1048, 1604
BmsI	GCATC	6 cut(s)	867, 874, 909, 1195, 1510, 1549
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	2 cut(s)	291, 825
Bpu10I	CCTNAGC	2 cut(s)	888, 899
Bpu14I	TTCGAA	1 cut(s)	758
BpuEI	CTTGAG	2 cut(s)	74, 1259
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 689, 1502
Bse118I	RCCGGY	1 cut(s)	1271
Bse1I	ACTGG	2 cut(s)	793, 1588
Bse21I	CCTNAGG	1 cut(s)	684
Bse3DI	GCAATG	1 cut(s)	56
BseBI	CCWGG	3 cut(s)	52, 1048, 1604
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	4 cut(s)	256, 326, 424, 889
BseLI	CCNNNNNNNGG	3 cut(s)	83, 689, 1502
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	3 cut(s)	87, 902, 1434
BseNI	ACTGG	2 cut(s)	793, 1588
BseXI	GCAGC	2 cut(s)	48, 1271
BseYI	CCCAGC	1 cut(s)	1262
BsgI	GTGCAG	1 cut(s)	1209
BshFI	GGCC	6 cut(s)	87, 796, 871, 1023, 1271, 1416
BsiHKCI	CYCGRG	1 cut(s)	782
BsiSI	CCGG	2 cut(s)	864, 1272
BslFI	GGGAC	1 cut(s)	1594
BslI	CCNNNNNNNGG	3 cut(s)	83, 689, 1502
BsmAI	GTCTC	3 cut(s)	41, 779, 1007
BsmFI	GGGAC	1 cut(s)	1594
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	6 cut(s)	87, 796, 871, 1023, 1271, 1416
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	782
Bsp119I	TTCGAA	1 cut(s)	758
Bsp143I	GATC	1 cut(s)	913
BspACI	CCGC	2 cut(s)	186, 1137
BspANI	GGCC	6 cut(s)	87, 796, 871, 1023, 1271, 1416
BspCNI	CTCAG	3 cut(s)	88, 901, 1435
BspMAI	CTGCAG	2 cut(s)	621, 1042
BspPI	GGATC	1 cut(s)	921
BspQI	GCTCTTC	1 cut(s)	630
BspT104I	TTCGAA	1 cut(s)	758
BspTI	CTTAAG	2 cut(s)	935, 1211
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	1271
BsrI	ACTGG	2 cut(s)	793, 1588
BssAI	RCCGGY	1 cut(s)	1271
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	1 cut(s)	913
BssSI	CACGAG	2 cut(s)	570, 672
BssT1I	CCWWGG	1 cut(s)	414
Bst2BI	CACGAG	2 cut(s)	570, 672
Bst2UI	CCWGG	3 cut(s)	52, 1048, 1604
Bst4CI	ACNGT	3 cut(s)	550, 1018, 1144
Bst6I	CTCTTC	1 cut(s)	630
BstAFI	CTTAAG	2 cut(s)	935, 1211
BstBI	TTCGAA	1 cut(s)	758
BstC8I	GCNNGC	3 cut(s)	621, 869, 1493
BstDEI	CTNAG	8 cut(s)	12, 96, 504, 684, 888, 899, 1371, 1443
BstF5I	GGATG	4 cut(s)	256, 326, 424, 889
BstHHI	GCGC	2 cut(s)	211, 541
BstKTI	GATC	1 cut(s)	916
BstMAI	GTCTC	3 cut(s)	41, 779, 1007
BstMBI	GATC	1 cut(s)	913
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 183, 269, 308, 536, 864, 1268, 1339, 1529
BstNI	CCWGG	3 cut(s)	52, 1048, 1604
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	3 cut(s)	50, 1046, 1602
BstSFI	CTRYAG	3 cut(s)	521, 617, 1038
BstV1I	GCAGC	2 cut(s)	48, 1271
BstV2I	GAAGAC	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	359
Bsu36I	CCTNAGG	1 cut(s)	684
BsuRI	GGCC	6 cut(s)	87, 796, 871, 1023, 1271, 1416
BtsCI	GGATG	4 cut(s)	256, 326, 424, 889
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	487, 1547
Cac8I	GCNNGC	3 cut(s)	621, 869, 1493
CaiI	CAGNNNCTG	1 cut(s)	1262
CfoI	GCGC	2 cut(s)	211, 541
Cfr10I	RCCGGY	1 cut(s)	1271
Cfr13I	GGNCC	3 cut(s)	85, 1022, 1414
CseI	GACGC	1 cut(s)	1193
CsiI	ACCWGGT	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	324, 680, 1194
CspCI	CAANNNNNGTGG	2 cut(s)	1386, 1421
CviAII	CATG	4 cut(s)	739, 811, 910, 923
CviQI	GTAC	3 cut(s)	324, 680, 1194
DdeI	CTNAG	8 cut(s)	12, 96, 504, 684, 888, 899, 1371, 1443
DpnI	GATC	1 cut(s)	915
DpnII	GATC	1 cut(s)	913
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	414
Eco147I	AGGCCT	1 cut(s)	796
Eco31I	GGTCTC	1 cut(s)	41
Eco57I	CTGAAG	5 cut(s)	60, 206, 641, 975, 1053
Eco81I	CCTNAGG	1 cut(s)	684
Eco88I	CYCGRG	1 cut(s)	782
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	3 cut(s)	50, 1046, 1602
EcoT14I	CCWWGG	1 cut(s)	414
EcoT22I	ATGCAT	1 cut(s)	924
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	4 cut(s)	742, 814, 913, 926
FalI	AAGNNNNNCTT	4 cut(s)	810, 842, 1194, 1226
FaqI	GGGAC	1 cut(s)	1594
FatI	CATG	4 cut(s)	738, 810, 909, 922
FauNDI	CATATG	1 cut(s)	1609
Fnu4HI	GCNGC	2 cut(s)	62, 1260
FokI	GGATG	4 cut(s)	263, 333, 431, 896
Fsp4HI	GCNGC	2 cut(s)	62, 1260
FspBI	CTAG	3 cut(s)	20, 744, 855
GlaI	GCGC	2 cut(s)	210, 540
GluI	GCNGC	2 cut(s)	62, 1260
GsaI	CCCAGC	1 cut(s)	1266
GsuI	CTGGAG	2 cut(s)	291, 825
HaeIII	GGCC	6 cut(s)	87, 796, 871, 1023, 1271, 1416
HapII	CCGG	2 cut(s)	864, 1272
HgaI	GACGC	1 cut(s)	1193
HhaI	GCGC	2 cut(s)	211, 541
Hin1II	CATG	4 cut(s)	742, 814, 913, 926
Hin6I	GCGC	2 cut(s)	209, 539
HinP1I	GCGC	2 cut(s)	209, 539
HindIII	AAGCTT	3 cut(s)	559, 938, 1131
HinfI	GANTC	2 cut(s)	8, 179
HpaII	CCGG	2 cut(s)	864, 1272
HphI	GGTGA	3 cut(s)	66, 385, 1123
Hpy188I	TCNGA	6 cut(s)	40, 699, 730, 852, 918, 1072
HpyAV	CCTTC	9 cut(s)	168, 416, 520, 754, 812, 938, 1077, 1108, 1261
HpyCH4III	ACNGT	3 cut(s)	550, 1018, 1144
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 183, 269, 308, 536, 864, 1268, 1339, 1529
HpyF3I	CTNAG	8 cut(s)	12, 96, 504, 684, 888, 899, 1371, 1443
Hsp92II	CATG	4 cut(s)	742, 814, 913, 926
HspAI	GCGC	2 cut(s)	209, 539
Kzo9I	GATC	1 cut(s)	913
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	2 cut(s)	1167, 1488
Lsp1109I	GCAGC	2 cut(s)	48, 1271
LweI	GCATC	6 cut(s)	867, 874, 909, 1195, 1510, 1549
MabI	ACCWGGT	1 cut(s)	50
MaeI	CTAG	3 cut(s)	20, 744, 855
MaeIII	GTNAC	7 cut(s)	15, 145, 373, 544, 1042, 1279, 1567
MalI	GATC	1 cut(s)	915
MboI	GATC	1 cut(s)	913
MboII	GAAGA	8 cut(s)	53, 124, 617, 647, 981, 1010, 1039, 1214
MfeI	CAATTG	1 cut(s)	1575
MmeI	TCCRAC	2 cut(s)	722, 875
Mph1103I	ATGCAT	1 cut(s)	924
MroXI	GAANNNNTTC	2 cut(s)	426, 822
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	1262
MspCI	CTTAAG	2 cut(s)	935, 1211
MspI	CCGG	2 cut(s)	864, 1272
MspR9I	CCNGG	3 cut(s)	52, 1048, 1604
MunI	CAATTG	1 cut(s)	1575
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	3 cut(s)	52, 1048, 1604
MwoI	GCNNNNNNNGC	9 cut(s)	67, 183, 269, 308, 536, 864, 1268, 1339, 1529
NdeI	CATATG	1 cut(s)	1609
NdeII	GATC	1 cut(s)	913
NlaIII	CATG	4 cut(s)	742, 814, 913, 926
NmuCI	GTSAC	3 cut(s)	373, 1279, 1567
NsiI	ATGCAT	1 cut(s)	924
NspI	RCATGY	1 cut(s)	742
NspV	TTCGAA	1 cut(s)	758
PaeR7I	CTCGAG	1 cut(s)	782
PceI	AGGCCT	1 cut(s)	796
PciSI	GCTCTTC	1 cut(s)	630
PctI	GAATGC	1 cut(s)	211
PdmI	GAANNNNTTC	2 cut(s)	426, 822
PfeI	GAWTC	2 cut(s)	8, 179
PflFI	GACNNNGTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	63, 1261
Psp6I	CCWGG	3 cut(s)	50, 1046, 1602
PspFI	CCCAGC	1 cut(s)	1262
PspGI	CCWGG	3 cut(s)	50, 1046, 1602
PspPI	GGNCC	3 cut(s)	85, 1022, 1414
PstI	CTGCAG	2 cut(s)	621, 1042
PstNI	CAGNNNCTG	1 cut(s)	1262
PsyI	GACNNNGTC	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	1262
RsaI	GTAC	3 cut(s)	325, 681, 1195
RsaNI	GTAC	3 cut(s)	324, 680, 1194
RseI	CAYNNNNRTG	1 cut(s)	357
SapI	GCTCTTC	1 cut(s)	630
SatI	GCNGC	2 cut(s)	62, 1260
Sau3AI	GATC	1 cut(s)	913
Sau96I	GGNCC	3 cut(s)	85, 1022, 1414
SbfI	CCTGCAGG	1 cut(s)	621
ScrFI	CCNGG	3 cut(s)	52, 1048, 1604
SdaI	CCTGCAGG	1 cut(s)	621
SexAI	ACCWGGT	1 cut(s)	50
SfaNI	GCATC	6 cut(s)	867, 874, 909, 1195, 1510, 1549
SfcI	CTRYAG	3 cut(s)	521, 617, 1038
Sfr274I	CTCGAG	1 cut(s)	782
SfuI	TTCGAA	1 cut(s)	758
SlaI	CTCGAG	1 cut(s)	782
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	5 cut(s)	89, 782, 935, 1211, 1238
SmoI	CTYRAG	5 cut(s)	89, 782, 935, 1211, 1238
SpeI	ACTAGT	1 cut(s)	19
Sse8387I	CCTGCAGG	1 cut(s)	621
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	2 cut(s)	186, 1137
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	3 cut(s)	20, 744, 855
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	3 cut(s)	50, 1046, 1602
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	550, 1018, 1144
TaqI	TCGA	5 cut(s)	758, 783, 1100, 1249, 1450
TaqII	GACCGA	1 cut(s)	1555
TatI	WGTACW	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	8, 179
TscAI	CASTG	2 cut(s)	487, 1547
TseFI	GTSAC	3 cut(s)	373, 1279, 1567
TseI	GCWGC	2 cut(s)	61, 1259
Tsp45I	GTSAC	3 cut(s)	373, 1279, 1567
TspDTI	ATGAA	4 cut(s)	267, 435, 942, 1020
TspRI	CASTG	2 cut(s)	487, 1547
Tth111I	GACNNNGTC	1 cut(s)	52
Vha464I	CTTAAG	2 cut(s)	935, 1211
XapI	RAATTY	3 cut(s)	139, 731, 832
XceI	RCATGY	1 cut(s)	742
XhoI	CTCGAG	1 cut(s)	782
XmnI	GAANNNNTTC	2 cut(s)	426, 822
XspI	CTAG	3 cut(s)	20, 744, 855
Zsp2I	ATGCAT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.