Rh1DG030800

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007263
Physical Location & Seq
Reverse (-)
4570882 .. 4577200
6319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG030800.1

Sequence Viewer

Length: 1191 bp
ATGACTGATTCTAAGCTATTCATATTTGGGTCATTCTCTGAAGATGAGACCAAGTCATTGCTTCTAAAGCAATCACCGGGGAAGCCGTCACCTGTGAAGGGTGAAAAGCCAGTGGAAACAAACGTATTGCAGTTTGGTTCGATAAATTTTGTTACGGATAAATCTTTAGTTGAGTTGAATGGGGGATCAAGTAGACAGCAAAGTTGTTTGAAGGGGCCGAGCAAATTGCAGTCTCTAAATGCAGATAATAAGCACAATGAAGTTAAGACTGCAAAAGCTGGAGATAATAATTTACTAGGATCAGTGGCAATTCCGACACAGAATGGGTGTGCTGATCATCACAGTCACAGTTCTACTCATAGTAATGGTGTAAAAGAGGTTACGACAGATGATATTGATTTGTCTTCATCACATCTATCCCAGAATGAAGGTGGTTTCTCAAATCAATTTTCAAGTTTGAATTTGCAAAGCAGAGAGCAGAATGGTAGTGTTGGTGATTTATCAGTTTCTGATTCTAAGGGTGAACTCCAAAAGTCCTTGAACGGGCCTGCCACAGTCTGTACAATTTTGTTGCCTCGTGGTTTAATCAACTCGGGAAATCTCTGCTTTCTTAATGCGACTCTGCAGGCTCTCCTATCCTGTTCTCCTTTCGTTCAACTTCTTCATGAATTAAGAACTCGCAACATCCCCAAGATTGGCTACCCCACATTGTGTGCATTTGCTGAGTTTGTCTCGGAATTCGACGTGCCTAGTTCAAGTTCAAAGAATAAAGATACAAGTGTTGCCGAGGCTGGTAGGCCTTTTAGCCCTGCCATGTTTGAAGGTGTTCTTAAAGCTTTTACTCCAGATGTGCCAAGTACCATATCAGGCAGGCCAAGACAAGAAGATGCTCAGGAGTTTCTTAGCTTCATTATGGATCAGATGCATGATGAGTTACTTAAGCTTGAAGGACAATCCTCGTGCTTAAATGGGGGAAAATCATCTCTTGTATCTTCTGCAGAAGATGATGAATGGGAGACGGTTGGCCCAAAGAATACATCTGCAGTAACTAGAACACAGAGTTTTGTCCCTTCAGAATTGAGTGATATTTTTGGTGGACAATTAAGAAGTGTGGTGAAGGCAAGAGGTGTGGCATTTGCATTGTTTCTGTTCAGTTTTAAGATTTTGGTAACAGCTATTCGATATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04139 map04139
Pfam Domains
Protein Families
UCH

Protein Analysis

396

Amino Acids

42.62

Weight (kDa)

5.68

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 193 - 375 8.8e-18 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 193
AclWI GGATC 3 cut(s) 193, 307, 924
AcsI RAATTY 3 cut(s) 145, 460, 737
AcuI CTGAAG 2 cut(s) 60, 1056
AdeI CACNNNGTG 1 cut(s) 711
AfaI GTAC 2 cut(s) 562, 859
AfiI CCNNNNNNNGG 3 cut(s) 98, 543, 695
AflII CTTAAG 1 cut(s) 938
AjiI CACGTC 1 cut(s) 745
AluBI AGCT 6 cut(s) 16, 278, 836, 906, 943, 1175
AluI AGCT 6 cut(s) 16, 278, 836, 906, 943, 1175
Alw26I GTCTC 4 cut(s) 41, 237, 736, 1010
AlwI GGATC 3 cut(s) 193, 307, 924
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 592
AoxI GGCC 5 cut(s) 215, 545, 797, 872, 1024
ApoI RAATTY 3 cut(s) 145, 460, 737
Asp700I GAANNNNTTC 1 cut(s) 825
AspS9I GGNCC 3 cut(s) 215, 545, 1025
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 6 cut(s) 66, 81, 113, 506, 533, 1126
AvaI CYCGRG 1 cut(s) 592
BaeI ACNNNNGTAYC 2 cut(s) 765, 798
BauI CACGAG 2 cut(s) 576, 958
BbsI GAAGAC 1 cut(s) 396
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 4 cut(s) 41, 237, 736, 1010
BfaI CTAG 3 cut(s) 296, 750, 1050
BfmI CTRYAG 3 cut(s) 623, 996, 1041
BfrI CTTAAG 1 cut(s) 938
Bme1390I CCNGG 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 592
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 3 cut(s) 215, 545, 1025
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 877, 912
BpiI GAAGAC 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 716, 748
BpmI CTGGAG 2 cut(s) 300, 828
Bpu10I CCTNAGC 1 cut(s) 891
BpuMI CCSGG 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 77, 786
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 543, 695
Bse1I ACTGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 77, 786
BseGI GGATG 1 cut(s) 684
BseLI CCNNNNNNNGG 3 cut(s) 98, 543, 695
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 714, 905
BseNI ACTGG 1 cut(s) 110
BshFI GGCC 5 cut(s) 217, 547, 799, 874, 1026
BsiHKCI CYCGRG 1 cut(s) 592
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 1052
BslI CCNNNNNNNGG 3 cut(s) 98, 543, 695
BsmAI GTCTC 4 cut(s) 41, 237, 736, 1010
BsmBI CGTCTC 1 cut(s) 1010
BsmFI GGGAC 1 cut(s) 1052
BsnI GGCC 5 cut(s) 217, 547, 799, 874, 1026
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 592
Bsp1407I TGTACA 1 cut(s) 560
Bsp143I GATC 4 cut(s) 185, 299, 334, 916
BspANI GGCC 5 cut(s) 217, 547, 799, 874, 1026
BspCNI CTCAG 2 cut(s) 715, 904
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 216
BspMAI CTGCAG 3 cut(s) 627, 1000, 1045
BspPI GGATC 3 cut(s) 193, 307, 924
BspTI CTTAAG 1 cut(s) 938
BspTNI GGTCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 560
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 77, 786
BssMI GATC 4 cut(s) 185, 299, 334, 916
BssSI CACGAG 2 cut(s) 576, 958
Bst2BI CACGAG 2 cut(s) 576, 958
Bst4CI ACNGT 4 cut(s) 344, 350, 556, 1021
BstAFI CTTAAG 1 cut(s) 938
BstAUI TGTACA 1 cut(s) 560
BstC8I GCNNGC 3 cut(s) 549, 627, 872
BstDEI CTNAG 5 cut(s) 12, 516, 723, 891, 902
BstF5I GGATG 1 cut(s) 684
BstKTI GATC 4 cut(s) 188, 302, 337, 919
BstMAI GTCTC 4 cut(s) 41, 237, 736, 1010
BstMBI GATC 4 cut(s) 185, 299, 334, 916
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 3 cut(s) 623, 996, 1041
BstV2I GAAGAC 1 cut(s) 396
BsuRI GGCC 5 cut(s) 217, 547, 799, 874, 1026
BtrI CACGTC 1 cut(s) 745
BtsCI GGATG 1 cut(s) 684
BtsIMutI CAGTG 2 cut(s) 117, 309
Cac8I GCNNGC 3 cut(s) 549, 627, 872
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 664
Cfr13I GGNCC 3 cut(s) 215, 545, 1025
Csp6I GTAC 2 cut(s) 561, 858
CspCI CAANNNNNGTGG 2 cut(s) 1110, 1145
CviAII CATG 3 cut(s) 665, 814, 926
CviQI GTAC 2 cut(s) 561, 858
DdeI CTNAG 5 cut(s) 12, 516, 723, 891, 902
DpnI GATC 4 cut(s) 187, 301, 336, 918
DpnII GATC 4 cut(s) 185, 299, 334, 916
DraIII CACNNNGTG 1 cut(s) 711
Eco147I AGGCCT 1 cut(s) 799
Eco31I GGTCTC 1 cut(s) 41
Eco57I CTGAAG 2 cut(s) 60, 1056
Eco88I CYCGRG 1 cut(s) 592
EcoRI GAATTC 1 cut(s) 737
EcoT22I ATGCAT 1 cut(s) 927
Esp3I CGTCTC 1 cut(s) 1010
FaeI CATG 3 cut(s) 668, 817, 929
FaiI YATR 9 cut(s) 23, 360, 666, 815, 863, 914, 927, 1185, 1187
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 1 cut(s) 1052
FatI CATG 3 cut(s) 664, 813, 925
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 193
FokI GGATG 1 cut(s) 671
FspBI CTAG 3 cut(s) 296, 750, 1050
GsuI CTGGAG 2 cut(s) 300, 828
HaeIII GGCC 5 cut(s) 217, 547, 799, 874, 1026
HapII CCGG 1 cut(s) 77
Hin1II CATG 3 cut(s) 668, 817, 929
HindIII AAGCTT 2 cut(s) 834, 941
HinfI GANTC 3 cut(s) 8, 512, 619
HpaII CCGG 1 cut(s) 77
HphI GGTGA 6 cut(s) 66, 81, 113, 506, 533, 1126
Hpy166II GTNNAC 3 cut(s) 194, 524, 1097
Hpy188I TCNGA 6 cut(s) 40, 315, 511, 736, 921, 1075
Hpy188III TCNNGA 4 cut(s) 594, 665, 845, 893
Hpy8I GTNNAC 3 cut(s) 194, 524, 1097
Hpy99I CGWCG 1 cut(s) 746
HpyAV CCTTC 7 cut(s) 91, 205, 422, 815, 941, 1080, 1111
HpyCH4III ACNGT 4 cut(s) 344, 350, 556, 1021
HpyCH4IV ACGT 2 cut(s) 123, 744
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 5 cut(s) 12, 516, 723, 891, 902
HpySE526I ACGT 2 cut(s) 123, 744
Hsp92II CATG 3 cut(s) 668, 817, 929
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 4 cut(s) 185, 299, 334, 916
LweI GCATC 2 cut(s) 877, 912
MaeI CTAG 3 cut(s) 296, 750, 1050
MaeII ACGT 2 cut(s) 123, 744
MaeIII GTNAC 7 cut(s) 87, 151, 344, 379, 933, 1045, 1168
MalI GATC 4 cut(s) 187, 301, 336, 918
MboI GATC 4 cut(s) 185, 299, 334, 916
MboII GAAGA 6 cut(s) 53, 396, 653, 896, 984, 1013
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 5 cut(s) 370, 585, 781, 967, 1118
Mph1103I ATGCAT 1 cut(s) 927
MroXI GAANNNNTTC 1 cut(s) 825
MseI TTAA 9 cut(s) 264, 584, 612, 671, 831, 939, 965, 1103, 1158
MslI CAYNNNNRTG 1 cut(s) 363
MspCI CTTAAG 1 cut(s) 938
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 78
NdeII GATC 4 cut(s) 185, 299, 334, 916
NlaIII CATG 3 cut(s) 668, 817, 929
NlaIV GGNNCC 1 cut(s) 216
NmeAIII GCCGAG 2 cut(s) 243, 811
NmuCI GTSAC 2 cut(s) 87, 344
NsiI ATGCAT 1 cut(s) 927
PagI TCATGA 1 cut(s) 664
PceI AGGCCT 1 cut(s) 799
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 2 cut(s) 8, 512
PflFI GACNNNGTC 1 cut(s) 52
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 3 cut(s) 215, 545, 1025
PstI CTGCAG 3 cut(s) 627, 1000, 1045
PstNI CAGNNNCTG 1 cut(s) 509
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 2 cut(s) 562, 859
RsaNI GTAC 2 cut(s) 561, 858
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 9 cut(s) 264, 584, 612, 671, 831, 939, 965, 1103, 1158
Sau3AI GATC 4 cut(s) 185, 299, 334, 916
Sau96I GGNCC 3 cut(s) 215, 545, 1025
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 1 cut(s) 78
SfaNI GCATC 2 cut(s) 877, 912
SfcI CTRYAG 3 cut(s) 623, 996, 1041
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
SseBI AGGCCT 1 cut(s) 799
SspMI CTAG 3 cut(s) 296, 750, 1050
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 4 cut(s) 344, 350, 556, 1021
TaiI ACGT 2 cut(s) 126, 747
TaqI TCGA 3 cut(s) 140, 741, 1180
TatI WGTACW 1 cut(s) 560
TfiI GAWTC 2 cut(s) 8, 512
Tru1I TTAA 9 cut(s) 264, 584, 612, 671, 831, 939, 965, 1103, 1158
Tru9I TTAA 9 cut(s) 264, 584, 612, 671, 831, 939, 965, 1103, 1158
TscAI CASTG 2 cut(s) 117, 309
TseFI GTSAC 2 cut(s) 87, 344
Tsp45I GTSAC 2 cut(s) 87, 344
TspDTI ATGAA 8 cut(s) 10, 273, 396, 441, 653, 681, 898, 1023
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 2 cut(s) 117, 309
Tth111I GACNNNGTC 1 cut(s) 52
Vha464I CTTAAG 1 cut(s) 938
XapI RAATTY 3 cut(s) 145, 460, 737
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 3 cut(s) 296, 750, 1050
Zsp2I ATGCAT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.