Prupe.2G027700_v2.0.a1

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
2881737 .. 2887784
6048 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G027700.1

Sequence Viewer

Length: 1626 bp
ATGAGTGATTCTAAGCTATTCGTTTTTGGGTCATTCTCTGAAGACGAGACCAGGTCATTGCTGCAAAAACAATCACCTGGGAAGGCTGAAAAGCCTGTGGAAAAGAATGTATTGCAGTTTGGGTCTATAAATTTTGTTACTAAAATATCTTCGGGTGAATGTAATGGTGAATCAAGCAGACCACAAAATTCTGTGAAAGGGCTCAGCAAAGTTCAGCCTTTAAGTTCACTTAATAAGCAGAATGAAGTGGAGGCTGTAAAAGCAGCAAATGATAGTTTACCAGCATCTTTAACTACTCCTACAGAGAATGGATGTACTGATAATTATAAAAATGGTTCTGCCCATAGTAATGGTGTGAAAGAGGCGACAAAGGATAATATTGATGTAGCTTCATTACCTTTATCCAATAACGAAGGTGGTCTCTCCAATAAATTTTCAAGTCTGGAATTGCAGAACAGAGAGCAGAATGGTTGGGTTGATGATTTATCAGCTTCTAAGGTAAAGGGGGAACTACAGAAGTGTTTGAATGGGCCTGTTACAGTTTCTACAGTCTTGTTGCCTCGTGGTTTAATTAATTCAGGGAATCTGTGCTTTCTCAATGCAACGCTACAGGCTCTTCTATCCTGTTCTCCTTTTGTTCAGCTTCTGCAGGAATTGAGAACTCGCAAAGTGCCTAAGGTTGGCTATCCAACATTGGGTGCATTTGCAGAGTTCGTCTCTGAATTTGACATGCCTAGTGGTTCAAGTTCAAAGAACAAAGATGCAAGTGTTCTTGAGACTGGTAGGCCTTTTAGCCCTGCCATGTTTGAAGGTGTTCTTAAAATTTTTACTCCAGATGTACCAACTAGCATCTCGGGCAGGCCAAGACAAGAAGATGCTCAGGAGTTCCTTAGCTTCATTATGGATCAGATGCATGATGAATTACTTAAGCTTGAAGGACAGCCCTCGAGTATTAATGGGCGCAAATCATCTCTAGTATCTTCTGCAGAAGAAGATGAATGGGAGACGGTTGGCCCTAAGAATACATCTGCAGTAACCAGGACACAGAGTTTTGTTCCTTCAGAATTAAGCGATATTTTTGGAGGACAATTGAGAAGTGTGGTGAAGGCAAGAGGAAATAAAGCTTCTGCTACTGTTCAACCATTTTTATTGCTTCACCTTGATATTTACCCTGAAGCTGTTCGTACTATCGAGGATGCACTCAAGTTGTTTTCTGCACCAGAAACTCTTGAGGGGTATCGAACATCAGCAGCTGGGAAGGCTGGTGTTGTAAGTGCTAGTAAATCAATAAAGATACAGACACTTTCGAAGATAATGATCTTGCACTTGATGCGTTTTGGTTATGGAAGCCAAGGAAGCACTAAGTTGCATAAGCCCGTGCATTTTCCACTTGAGTTGGTGTTGGGTCGTGAATTGCTTGTTTCTCCAACTACTGAGGGTCGAAAATACAAACTTGTTGCTACAATAACTCATCACGGGAGAGAGCCCTCAAAGGGGCATTATACAACTGATGCTCTTTATACCAATGGTCAGTGGCTACGCTTTGATGATGCATCTGTCACTGCAATCGGAACCGGCAAAGTATTGCATGACCAGGCATATGTCCTCATCTACAAACAATTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

542

Amino Acids

58.76

Weight (kDa)

7.64

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AclWI GGATC 1 cut(s) 912
AcsI RAATTY 5 cut(s) 130, 187, 431, 722, 822
AcuI CTGAAG 3 cut(s) 60, 1044, 1194
AfaI GTAC 3 cut(s) 316, 840, 1186
AfiI CCNNNNNNNGG 4 cut(s) 680, 695, 1493, 1494
AflII CTTAAG 1 cut(s) 926
AgsI TTSAA 7 cut(s) 438, 526, 744, 750, 809, 935, 1139
AjnI CCWGG 4 cut(s) 50, 76, 1037, 1593
AluBI AGCT 9 cut(s) 16, 389, 491, 643, 894, 931, 1124, 1178, 1253
AluI AGCT 9 cut(s) 16, 389, 491, 643, 894, 931, 1124, 1178, 1253
Alw26I GTCTC 5 cut(s) 41, 425, 721, 770, 998
AlwI GGATC 1 cut(s) 912
AlwNI CAGNNNCTG 2 cut(s) 646, 1253
Ama87I CYCGRG 2 cut(s) 853, 946
AoxI GGCC 4 cut(s) 530, 785, 860, 1012
ApeKI GCWGC 3 cut(s) 61, 263, 1250
ApoI RAATTY 5 cut(s) 130, 187, 431, 722, 822
AseI ATTAAT 2 cut(s) 573, 954
Asp700I GAANNNNTTC 2 cut(s) 813, 1179
AspLEI GCGC 1 cut(s) 963
AspS9I GGNCC 2 cut(s) 530, 1013
AsuHPI GGTGA 5 cut(s) 66, 167, 179, 1114, 1148
AsuII TTCGAA 1 cut(s) 1307
AvaI CYCGRG 2 cut(s) 853, 946
AxyI CCTNAGG 1 cut(s) 675
BanII GRGCYC 2 cut(s) 204, 1488
BauI CACGAG 1 cut(s) 561
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 48, 275, 1262
BciT130I CCWGG 4 cut(s) 52, 78, 1039, 1595
BcoDI GTCTC 5 cut(s) 41, 425, 721, 770, 998
BfaI CTAG 4 cut(s) 735, 846, 974, 1278
BfmI CTRYAG 7 cut(s) 300, 512, 546, 608, 647, 984, 1029
BfrI CTTAAG 1 cut(s) 926
BisI GCNGC 3 cut(s) 62, 264, 1251
BlpI GCTNAGC 1 cut(s) 203
BlsI GCNGC 3 cut(s) 63, 265, 1252
Bme1390I CCNGG 4 cut(s) 52, 78, 1039, 1595
BmeT110I CYCGRG 2 cut(s) 853, 946
BmgT120I GGNCC 2 cut(s) 530, 1013
BmiI GGNNCC 1 cut(s) 1573
BmrFI CCNGG 4 cut(s) 52, 78, 1039, 1595
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 701, 733
BpmI CTGGAG 1 cut(s) 816
Bpu10I CCTNAGC 2 cut(s) 879, 890
Bpu1102I GCTNAGC 1 cut(s) 203
Bpu14I TTCGAA 1 cut(s) 1307
BpuEI CTTGAG 4 cut(s) 794, 1187, 1250, 1412
BsaBI GATNNNNATC 1 cut(s) 1316
BsaI GGTCTC 2 cut(s) 41, 425
BsaJI CCNNGG 2 cut(s) 77, 1351
Bsc4I CCNNNNNNNGG 4 cut(s) 680, 695, 1493, 1494
Bse118I RCCGGY 1 cut(s) 1574
Bse1I ACTGG 1 cut(s) 784
Bse21I CCTNAGG 1 cut(s) 675
Bse3DI GCAATG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 1316
BseBI CCWGG 4 cut(s) 52, 78, 1039, 1595
BseDI CCNNGG 2 cut(s) 77, 1351
BseGI GGATG 2 cut(s) 317, 1201
BseJI GATNNNNATC 1 cut(s) 1316
BseLI CCNNNNNNNGG 4 cut(s) 680, 695, 1493, 1494
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 3 cut(s) 217, 893, 1425
BseNI ACTGG 1 cut(s) 784
BseXI GCAGC 3 cut(s) 48, 275, 1262
BseYI CCCAGC 1 cut(s) 1253
BsgI GTGCAG 1 cut(s) 1200
BshFI GGCC 4 cut(s) 532, 787, 862, 1014
BsiHKCI CYCGRG 2 cut(s) 853, 946
BsiSI CCGG 1 cut(s) 1575
BslI CCNNNNNNNGG 4 cut(s) 680, 695, 1493, 1494
BsmAI GTCTC 5 cut(s) 41, 425, 721, 770, 998
BsmBI CGTCTC 2 cut(s) 721, 998
BsnI GGCC 4 cut(s) 532, 787, 862, 1014
Bso31I GGTCTC 2 cut(s) 41, 425
BsoBI CYCGRG 2 cut(s) 853, 946
Bsp119I TTCGAA 1 cut(s) 1307
Bsp1286I GDGCHC 2 cut(s) 204, 1488
Bsp143I GATC 2 cut(s) 904, 1317
Bsp1720I GCTNAGC 1 cut(s) 203
BspANI GGCC 4 cut(s) 532, 787, 862, 1014
BspCNI CTCAG 3 cut(s) 216, 892, 1426
BspLI GGNNCC 1 cut(s) 1573
BspMAI CTGCAG 3 cut(s) 651, 988, 1033
BspPI GGATC 1 cut(s) 912
BspQI GCTCTTC 1 cut(s) 621
BspT104I TTCGAA 1 cut(s) 1307
BspTI CTTAAG 1 cut(s) 926
BspTNI GGTCTC 2 cut(s) 41, 425
BsrDI GCAATG 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 1574
BsrI ACTGG 1 cut(s) 784
BssAI RCCGGY 1 cut(s) 1574
BssECI CCNNGG 2 cut(s) 77, 1351
BssMI GATC 2 cut(s) 904, 1317
BssSI CACGAG 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 1351
Bst2BI CACGAG 1 cut(s) 561
Bst2UI CCWGG 4 cut(s) 52, 78, 1039, 1595
Bst4CI ACNGT 4 cut(s) 541, 550, 1009, 1135
Bst6I CTCTTC 1 cut(s) 621
BstAFI CTTAAG 1 cut(s) 926
BstAPI GCANNNNNTGC 1 cut(s) 1330
BstBI TTCGAA 1 cut(s) 1307
BstC8I GCNNGC 1 cut(s) 860
BstDEI CTNAG 9 cut(s) 12, 203, 495, 675, 879, 890, 1017, 1362, 1434
BstF5I GGATG 2 cut(s) 317, 1201
BstHHI GCGC 1 cut(s) 963
BstKTI GATC 2 cut(s) 907, 1320
BstMAI GTCTC 5 cut(s) 41, 425, 721, 770, 998
BstMBI GATC 2 cut(s) 904, 1317
BstMWI GCNNNNNNNGC 5 cut(s) 260, 855, 1259, 1330, 1356
BstNI CCWGG 4 cut(s) 52, 78, 1039, 1595
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 4 cut(s) 50, 76, 1037, 1593
BstSFI CTRYAG 7 cut(s) 300, 512, 546, 608, 647, 984, 1029
BstV1I GCAGC 3 cut(s) 48, 275, 1262
BstV2I GAAGAC 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 350
Bsu36I CCTNAGG 1 cut(s) 675
BsuRI GGCC 4 cut(s) 532, 787, 862, 1014
BtsCI GGATG 2 cut(s) 317, 1201
BtsI GCAGTG 1 cut(s) 1560
BtsIMutI CAGTG 2 cut(s) 1538, 1560
Cac8I GCNNGC 1 cut(s) 860
CaiI CAGNNNCTG 2 cut(s) 646, 1253
CfoI GCGC 1 cut(s) 963
Cfr10I RCCGGY 1 cut(s) 1574
Cfr13I GGNCC 2 cut(s) 530, 1013
CsiI ACCWGGT 1 cut(s) 50
Csp6I GTAC 3 cut(s) 315, 839, 1185
CspCI CAANNNNNGTGG 2 cut(s) 1377, 1412
CviAII CATG 4 cut(s) 730, 802, 914, 1589
CviQI GTAC 3 cut(s) 315, 839, 1185
DdeI CTNAG 9 cut(s) 12, 203, 495, 675, 879, 890, 1017, 1362, 1434
DpnI GATC 2 cut(s) 906, 1319
DpnII GATC 2 cut(s) 904, 1317
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Eco130I CCWWGG 1 cut(s) 1351
Eco147I AGGCCT 1 cut(s) 787
Eco24I GRGCYC 2 cut(s) 204, 1488
Eco31I GGTCTC 2 cut(s) 41, 425
Eco57I CTGAAG 3 cut(s) 60, 1044, 1194
Eco81I CCTNAGG 1 cut(s) 675
Eco88I CYCGRG 2 cut(s) 853, 946
EcoRII CCWGG 4 cut(s) 50, 76, 1037, 1593
EcoT14I CCWWGG 1 cut(s) 1351
EcoT22I ATGCAT 2 cut(s) 915, 1555
EcoT38I GRGCYC 2 cut(s) 204, 1488
ErhI CCWWGG 1 cut(s) 1351
Esp3I CGTCTC 2 cut(s) 721, 998
FaeI CATG 4 cut(s) 733, 805, 917, 1592
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FatI CATG 4 cut(s) 729, 801, 913, 1588
FauNDI CATATG 1 cut(s) 1600
Fnu4HI GCNGC 3 cut(s) 62, 264, 1251
FokI GGATG 2 cut(s) 324, 1208
FriOI GRGCYC 2 cut(s) 204, 1488
Fsp4HI GCNGC 3 cut(s) 62, 264, 1251
FspBI CTAG 4 cut(s) 735, 846, 974, 1278
GlaI GCGC 1 cut(s) 962
GluI GCNGC 3 cut(s) 62, 264, 1251
GsaI CCCAGC 1 cut(s) 1257
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 4 cut(s) 532, 787, 862, 1014
HapII CCGG 1 cut(s) 1575
HhaI GCGC 1 cut(s) 963
Hin1II CATG 4 cut(s) 733, 805, 917, 1592
Hin6I GCGC 1 cut(s) 961
HinP1I GCGC 1 cut(s) 961
HindIII AAGCTT 2 cut(s) 929, 1122
HinfI GANTC 3 cut(s) 8, 170, 583
HpaII CCGG 1 cut(s) 1575
HphI GGTGA 5 cut(s) 66, 167, 179, 1114, 1148
Hpy166II GTNNAC 2 cut(s) 227, 278
Hpy188I TCNGA 5 cut(s) 40, 721, 909, 1063, 1571
Hpy188III TCNNGA 6 cut(s) 443, 773, 833, 881, 1229, 1409
Hpy8I GTNNAC 2 cut(s) 227, 278
HpyAV CCTTC 7 cut(s) 76, 407, 803, 929, 1068, 1099, 1252
HpyCH4III ACNGT 4 cut(s) 541, 550, 1009, 1135
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 855, 1259, 1330, 1356
HpyF3I CTNAG 9 cut(s) 12, 203, 495, 675, 879, 890, 1017, 1362, 1434
Hsp92II CATG 4 cut(s) 733, 805, 917, 1592
HspAI GCGC 1 cut(s) 961
Kzo9I GATC 2 cut(s) 904, 1317
LguI GCTCTTC 1 cut(s) 621
Lsp1109I GCAGC 3 cut(s) 48, 275, 1262
MabI ACCWGGT 1 cut(s) 50
MaeI CTAG 4 cut(s) 735, 846, 974, 1278
MaeIII GTNAC 4 cut(s) 136, 535, 1033, 1558
MalI GATC 2 cut(s) 906, 1319
MboI GATC 2 cut(s) 904, 1317
MboII GAAGA 8 cut(s) 53, 141, 608, 884, 972, 1001, 1004, 1321
MfeI CAATTG 2 cut(s) 1088, 1619
MhlI GDGCHC 2 cut(s) 204, 1488
MmeI TCCRAC 2 cut(s) 713, 1451
Mph1103I ATGCAT 2 cut(s) 915, 1555
MroXI GAANNNNTTC 2 cut(s) 813, 1179
MseI TTAA 9 cut(s) 221, 231, 290, 569, 573, 819, 927, 954, 1067
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 1253
MspCI CTTAAG 1 cut(s) 926
MspI CCGG 1 cut(s) 1575
MspR9I CCNGG 4 cut(s) 52, 78, 1039, 1595
MunI CAATTG 2 cut(s) 1088, 1619
MvaI CCWGG 4 cut(s) 52, 78, 1039, 1595
MwoI GCNNNNNNNGC 5 cut(s) 260, 855, 1259, 1330, 1356
NdeI CATATG 1 cut(s) 1600
NdeII GATC 2 cut(s) 904, 1317
NlaIII CATG 4 cut(s) 733, 805, 917, 1592
NlaIV GGNNCC 1 cut(s) 1573
NmuCI GTSAC 1 cut(s) 1558
NsiI ATGCAT 2 cut(s) 915, 1555
NspI RCATGY 1 cut(s) 733
NspV TTCGAA 1 cut(s) 1307
PacI TTAATTAA 1 cut(s) 573
PaeR7I CTCGAG 1 cut(s) 946
PceI AGGCCT 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 621
PdmI GAANNNNTTC 2 cut(s) 813, 1179
PfeI GAWTC 3 cut(s) 8, 170, 583
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 3 cut(s) 63, 265, 1252
PshBI ATTAAT 2 cut(s) 573, 954
PsiI TTATAA 1 cut(s) 327
Psp6I CCWGG 4 cut(s) 50, 76, 1037, 1593
PspFI CCCAGC 1 cut(s) 1253
PspGI CCWGG 4 cut(s) 50, 76, 1037, 1593
PspN4I GGNNCC 1 cut(s) 1573
PspPI GGNCC 2 cut(s) 530, 1013
PspXI VCTCGAGB 1 cut(s) 946
PstI CTGCAG 3 cut(s) 651, 988, 1033
PstNI CAGNNNCTG 2 cut(s) 646, 1253
PsyI GACNNNGTC 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 1253
RsaI GTAC 3 cut(s) 316, 840, 1186
RsaNI GTAC 3 cut(s) 315, 839, 1185
RseI CAYNNNNRTG 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 621
SaqAI TTAA 9 cut(s) 221, 231, 290, 569, 573, 819, 927, 954, 1067
SatI GCNGC 3 cut(s) 62, 264, 1251
Sau3AI GATC 2 cut(s) 904, 1317
Sau96I GGNCC 2 cut(s) 530, 1013
ScrFI CCNGG 4 cut(s) 52, 78, 1039, 1595
SduI GDGCHC 2 cut(s) 204, 1488
SexAI ACCWGGT 1 cut(s) 50
SfcI CTRYAG 7 cut(s) 300, 512, 546, 608, 647, 984, 1029
Sfr274I CTCGAG 1 cut(s) 946
SfuI TTCGAA 1 cut(s) 1307
SlaI CTCGAG 1 cut(s) 946
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 6 cut(s) 773, 926, 946, 1202, 1229, 1391
SmoI CTYRAG 6 cut(s) 773, 926, 946, 1202, 1229, 1391
SseBI AGGCCT 1 cut(s) 787
SspI AATATT 1 cut(s) 379
SspMI CTAG 4 cut(s) 735, 846, 974, 1278
StuI AGGCCT 1 cut(s) 787
StyD4I CCNGG 4 cut(s) 50, 76, 1037, 1593
StyI CCWWGG 1 cut(s) 1351
TaaI ACNGT 4 cut(s) 541, 550, 1009, 1135
TaqI TCGA 5 cut(s) 947, 1191, 1240, 1307, 1441
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 3 cut(s) 8, 170, 583
Tru1I TTAA 9 cut(s) 221, 231, 290, 569, 573, 819, 927, 954, 1067
Tru9I TTAA 9 cut(s) 221, 231, 290, 569, 573, 819, 927, 954, 1067
TscAI CASTG 2 cut(s) 1538, 1567
TseFI GTSAC 1 cut(s) 1558
TseI GCWGC 3 cut(s) 61, 263, 1250
Tsp45I GTSAC 1 cut(s) 1558
TspDTI ATGAA 5 cut(s) 258, 381, 886, 933, 1011
TspRI CASTG 2 cut(s) 1538, 1567
Tth111I GACNNNGTC 1 cut(s) 52
Vha464I CTTAAG 1 cut(s) 926
VspI ATTAAT 2 cut(s) 573, 954
XapI RAATTY 5 cut(s) 130, 187, 431, 722, 822
XceI RCATGY 1 cut(s) 733
XhoI CTCGAG 1 cut(s) 946
XmnI GAANNNNTTC 2 cut(s) 813, 1179
XspI CTAG 4 cut(s) 735, 846, 974, 1278
Zsp2I ATGCAT 2 cut(s) 915, 1555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.