Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

5688126 .. 5690352

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGACCACGCGCTTCTTGGGGTCCTTCTCGCGCGTGGGGGCGGAGACATTTGAGGCGGAGATGAAGGAGACGCGTCTAGGGGCGGGTTTGGGAGTGAGGTTGGGGAAGTGGGCCCGCTTGCGGAGCGCAGCGGAGCCGGAGCCGATTTGGAATGAGCGGCTAGTTTGTGCTAAAACTAAGAAGGATAAGAAGGGAAAGGGGTGTTTAGTGGGAAGTGCAAGGAGGACACGTGGTGATACAAGTAACATTCAGCAGAGGCAAAATAAACAAGCTATCCAACATATAAAGCTGGAATTTGATTCATTTACAACAAAGAAGTATGTTGAGAATCTGACAAAGAACAGAGTTACAAAACTTGAGACAGTGCAGCAACATAATTTTCAGCTTGCTCGTGCACACAGCCAGATGTTAGAGGAAGTCACTTCAAGTCGAGATAGGGTAACTAAGGATACTTCAACATGCACTTGGATGCCAAATGCCTTGCTCAAAGTGAGGAAAGTGGAGGAAAAGGAGAAAGCCAAACGAGTAAGAAATCAAGCTAGGACAAATGTGGAGGTTCAGTTTAGTGTTTTGAGCCAGGTGATTCCTCACAAGCTGTCATGGACCATTTTAATACTAACAGGAAACGGCAACCACAAAATCTTGACGGTTGAGAAGGCAATTGGCAAGTGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

226

Amino Acids

25.65

Weight (kDa)

10.2

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	157
AccII	CGCG	4 cut(s)	10, 31, 33, 73
AciI	CCGC	7 cut(s)	41, 56, 83, 115, 121, 131, 157
AcsI	RAATTY	1 cut(s)	293
AcvI	CACGTG	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	120
AflIII	ACRYGT	2 cut(s)	71, 227
AgsI	TTSAA	2 cut(s)	426, 456
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	5 cut(s)	272, 289, 385, 539, 595
AluI	AGCT	5 cut(s)	272, 289, 385, 539, 595
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	3 cut(s)	38, 62, 353
Alw44I	GTGCAC	1 cut(s)	393
AoxI	GGCC	1 cut(s)	111
ApaI	GGGCCC	1 cut(s)	115
ApaLI	GTGCAC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	128, 367
ApoI	RAATTY	1 cut(s)	293
AspLEI	GCGC	3 cut(s)	12, 33, 128
AspS9I	GGNCC	4 cut(s)	21, 111, 112, 603
AsuHPI	GGTGA	2 cut(s)	245, 592
AvaII	GGWCC	2 cut(s)	21, 603
BaeGI	GKGCMC	2 cut(s)	115, 397
BanII	GRGCYC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	390
BbrPI	CACGTG	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	140, 379
BceAI	ACGGC	1 cut(s)	643
BciT130I	CCWGG	1 cut(s)	578
BciVI	GTATCC	1 cut(s)	442
BcoDI	GTCTC	3 cut(s)	38, 62, 353
BfaI	CTAG	3 cut(s)	77, 161, 540
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	3 cut(s)	129, 158, 368
BlsI	GCNGC	3 cut(s)	130, 159, 369
Bme1390I	CCNGG	1 cut(s)	578
Bme18I	GGWCC	2 cut(s)	21, 603
BmgT120I	GGNCC	4 cut(s)	21, 111, 112, 603
BmiI	GGNNCC	4 cut(s)	22, 113, 135, 141
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	377
BsaAI	YACGTR	1 cut(s)	230
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 244, 545, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	578
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseSI	GKGCMC	2 cut(s)	115, 397
BseXI	GCAGC	2 cut(s)	140, 379
BsgI	GTGCAG	1 cut(s)	386
Bsh1236I	CGCG	4 cut(s)	10, 31, 33, 73
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	3 cut(s)	38, 62, 353
BsmBI	CGTCTC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	113
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	115, 397
BspACI	CCGC	7 cut(s)	41, 56, 83, 115, 121, 131, 157
BspANI	GGCC	1 cut(s)	113
BspFNI	CGCG	4 cut(s)	10, 31, 33, 73
BspLI	GGNNCC	4 cut(s)	22, 113, 135, 141
BsrBI	CCGCTC	1 cut(s)	157
BssSI	CACGAG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	2 cut(s)	364, 649
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	115, 119, 387
BstDEI	CTNAG	2 cut(s)	177, 444
BstF5I	GGATG	1 cut(s)	474
BstFNI	CGCG	4 cut(s)	10, 31, 33, 73
BstHHI	GCGC	3 cut(s)	12, 33, 128
BstMAI	GTCTC	3 cut(s)	38, 62, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	576
BstSLI	GKGCMC	2 cut(s)	115, 397
BstUI	CGCG	4 cut(s)	10, 31, 33, 73
BstV1I	GCAGC	2 cut(s)	140, 379
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	115, 119, 387
CfoI	GCGC	3 cut(s)	12, 33, 128
Cfr13I	GGNCC	4 cut(s)	21, 111, 112, 603
CseI	GACGC	2 cut(s)	62, 79
CviAII	CATG	2 cut(s)	459, 600
DdeI	CTNAG	2 cut(s)	177, 444
DraIII	CACNNNGTG	1 cut(s)	233
EciI	GGCGGA	2 cut(s)	56, 71
Eco24I	GRGCYC	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	21, 603
Eco72I	CACGTG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	2 cut(s)	462, 603
FaiI	YATR	6 cut(s)	282, 284, 321, 375, 460, 601
FatI	CATG	2 cut(s)	458, 599
FauI	CCCGC	2 cut(s)	76, 122
Fnu4HI	GCNGC	3 cut(s)	129, 158, 368
FokI	GGATG	1 cut(s)	481
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	3 cut(s)	129, 158, 368
FspBI	CTAG	3 cut(s)	77, 161, 540
GlaI	GCGC	3 cut(s)	11, 32, 127
GluI	GCNGC	3 cut(s)	129, 158, 368
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	2 cut(s)	62, 79
HhaI	GCGC	3 cut(s)	12, 33, 128
Hin1II	CATG	2 cut(s)	462, 603
Hin6I	GCGC	3 cut(s)	10, 31, 126
HinP1I	GCGC	3 cut(s)	10, 31, 126
HinfI	GANTC	3 cut(s)	299, 328, 583
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	245, 592
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	2 cut(s)	431, 643
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	5 cut(s)	34, 58, 175, 184, 649
HpyCH4III	ACNGT	2 cut(s)	364, 649
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	218, 367, 395, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	2 cut(s)	177, 444
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	462, 603
HspAI	GCGC	3 cut(s)	10, 31, 126
LmnI	GCTCC	3 cut(s)	123, 133, 139
LpnPI	CCDG	6 cut(s)	150, 275, 416, 563, 590, 606
Lsp1109I	GCAGC	2 cut(s)	140, 379
LweI	GCATC	1 cut(s)	459
MaeI	CTAG	3 cut(s)	77, 161, 540
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	4 cut(s)	242, 346, 418, 439
MbiI	CCGCTC	1 cut(s)	157
MfeI	CAATTG	1 cut(s)	660
MhlI	GDGCHC	2 cut(s)	115, 397
MluCI	AATT	3 cut(s)	293, 376, 660
MluI	ACGCGT	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	9 cut(s)	46, 90, 216, 249, 406, 486, 496, 547, 597
MseI	TTAA	1 cut(s)	611
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	578
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	1 cut(s)	578
MvnI	CGCG	4 cut(s)	10, 31, 33, 73
MwoI	GCNNNNNNNGC	1 cut(s)	123
NlaIII	CATG	2 cut(s)	462, 603
NlaIV	GGNNCC	4 cut(s)	22, 113, 135, 141
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	299, 328, 583
PkrI	GCNGC	3 cut(s)	130, 159, 369
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	576
PspCI	CACGTG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	4 cut(s)	22, 113, 135, 141
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	4 cut(s)	21, 111, 112, 603
PspPPI	RGGWCCY	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	3 cut(s)	129, 158, 368
Sau96I	GGNCC	4 cut(s)	21, 111, 112, 603
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	2 cut(s)	115, 397
SetI	ASST	9 cut(s)	101, 232, 274, 291, 387, 541, 558, 582, 597
SfaNI	GCATC	1 cut(s)	459
SinI	GGWCC	2 cut(s)	21, 603
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	293, 376, 660
SsiI	CCGC	7 cut(s)	41, 56, 83, 115, 121, 131, 157
SspMI	CTAG	3 cut(s)	77, 161, 540
StyD4I	CCNGG	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	364, 649
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	430
TasI	AATT	3 cut(s)	293, 376, 660
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	3 cut(s)	299, 328, 583
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	128, 367
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	77, 291
TspRI	CASTG	1 cut(s)	369
VneI	GTGCAC	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	21, 603
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	3 cut(s)	77, 161, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.