Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

18644828 .. 18646828

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16220.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCCAGATAACAAGGCAAAAGGTGAGAAAATTGCTAAGGGGTTGTCGATTGGAAGTAACTCACGGAAGAGGCTTGGTGATATTAGCAACTTGCAGCCTCAGCAACCGAAACCATCGATTCAACAGGTGAAGCAGCAATTTGATTCAGATACAAATAAAGAGTATATTGACAATCTTCAGAAGGTACATTCTCGGTTAGTAGAGATACAGAACTTGAGAATCAATCTGCAGAAAGTACAACATCAGAATTTACAACTCGCCCAAGCAAATAGCCAGATCTTAGGGGTACTTTTTTACATGGCACTTCAACATGAAATCGGGTGCAAAAATGGTTTGCTCAAACTGAGAAAACTGGAGGCTGAGGTAGAAGGTTTAACTAAGTGTGTTGAAGCGGGGGAGTCCTTGCAAGCAGACAAGAAGGATGGTCCTTGTAATACCCAAAGGGATCGACATCCAAAAAATCCACTTGTGGCTTCTCATACTGTTGAAGCAGTCGAAGTTAAAGAGAAGGCTGATAATAAAAGAGGCTTGAGAAGGCAGTCTGCAAGGTTTAAAACTGAAGAAGAAGCAACGGAAGAAATGCCTGAGACCAATGGTTGCAAAATTCCCGTCTCTCCTCTTTGCAGTAATGTGGTTCATAAAAGTCAGACAACGTTTTCATCAGCAGAAAAAGAGGCTCCTGCTATTGAAGCAGTCCAAGCTAACAAGAAGGCTTACCACAAAAGGTTTGTTCGTTCTGCAAAGTTAAAAACTGAAGAACAGGAAGCCACTGAAGAAATGTTTGAGACCAATGGTGACAAAATTCCTGTCTCTCTTCTACGTGACAACGTGGTTCATGCAAGTGAGACGATATGTCCATTAGGGGGAAAAGACGATTCTACAAGTGCAGCAGTCCAAGCTAAAGAGAAGGCTTACAACAATAGGTTTGTTTATTTATGCATGATTGCTTTGAGCAATTACATGATTTCATTAGGTTTTCACATTGCTTACAGATTCTTTATGGTTACTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

338

Amino Acids

37.79

Weight (kDa)

8.9

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	392
AclI	AACGTT	1 cut(s)	653
AclWI	GGATC	1 cut(s)	453
AcsI	RAATTY	3 cut(s)	247, 603, 801
AcuI	CTGAAG	4 cut(s)	161, 579, 774, 792
AfaI	GTAC	3 cut(s)	186, 237, 288
AfiI	CCNNNNNNNGG	1 cut(s)	863
AgsI	TTSAA	5 cut(s)	122, 308, 389, 488, 689
AhdI	GACNNNNNGTC	1 cut(s)	852
AluBI	AGCT	2 cut(s)	701, 899
AluI	AGCT	2 cut(s)	701, 899
Alw26I	GTCTC	5 cut(s)	581, 616, 779, 814, 839
AlwI	GGATC	1 cut(s)	453
ApeKI	GCWGC	3 cut(s)	94, 133, 887
ApoI	RAATTY	3 cut(s)	247, 603, 801
ArsI	GACNNNNNNTTYG	4 cut(s)	594, 626, 792, 824
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	4 cut(s)	35, 89, 139, 806
AvaII	GGWCC	1 cut(s)	425
BbvCI	CCTCAGC	2 cut(s)	99, 360
BbvI	GCAGC	3 cut(s)	106, 145, 899
BccI	CCATC	2 cut(s)	121, 416
BcoDI	GTCTC	5 cut(s)	581, 616, 779, 814, 839
BfmI	CTRYAG	1 cut(s)	227
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	3 cut(s)	95, 134, 888
BlsI	GCNGC	3 cut(s)	96, 135, 889
Bme18I	GGWCC	1 cut(s)	425
BmeRI	GACNNNNNGTC	1 cut(s)	852
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	374
Bpu10I	CCTNAGC	3 cut(s)	36, 99, 360
BpuEI	CTTGAG	2 cut(s)	235, 550
Bsa29I	ATCGAT	1 cut(s)	116
BsaAI	YACGTR	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	2 cut(s)	581, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	863
Bse1I	ACTGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	981
Bse8I	GATNNNNATC	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	116
BseGI	GGATG	2 cut(s)	427, 451
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	863
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	4 cut(s)	113, 335, 351, 576
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	3 cut(s)	106, 145, 899
BsgI	GTGCAG	1 cut(s)	906
BshVI	ATCGAT	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	863
BsmAI	GTCTC	5 cut(s)	581, 616, 779, 814, 839
BsmBI	CGTCTC	2 cut(s)	616, 839
Bso31I	GGTCTC	2 cut(s)	581, 779
Bsp143I	GATC	2 cut(s)	276, 445
BspACI	CCGC	1 cut(s)	392
BspCNI	CTCAG	4 cut(s)	112, 336, 352, 577
BspDI	ATCGAT	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	678
BspMAI	CTGCAG	1 cut(s)	231
BspPI	GGATC	1 cut(s)	453
BspTNI	GGTCTC	2 cut(s)	581, 779
BsrDI	GCAATG	1 cut(s)	981
BsrI	ACTGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	276, 445
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	2 cut(s)	62, 819
BstBAI	YACGTR	1 cut(s)	821
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	7 cut(s)	36, 99, 280, 344, 360, 378, 585
BstF5I	GGATG	2 cut(s)	427, 451
BstKTI	GATC	2 cut(s)	279, 448
BstMAI	GTCTC	5 cut(s)	581, 616, 779, 814, 839
BstMBI	GATC	2 cut(s)	276, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 689, 698, 896
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	106, 145, 899
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	427, 451
BtsIMutI	CAGTG	1 cut(s)	768
Cac8I	GCNNGC	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	425
ClaI	ATCGAT	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	185, 236, 287
CviAII	CATG	5 cut(s)	298, 311, 836, 940, 961
CviQI	GTAC	3 cut(s)	185, 236, 287
DdeI	CTNAG	7 cut(s)	36, 99, 280, 344, 360, 378, 585
DpnI	GATC	2 cut(s)	278, 447
DpnII	GATC	2 cut(s)	276, 445
DraI	TTTAAA	1 cut(s)	553
DriI	GACNNNNNGTC	1 cut(s)	852
Eam1104I	CTCTTC	2 cut(s)	62, 819
Eam1105I	GACNNNNNGTC	1 cut(s)	852
EarI	CTCTTC	2 cut(s)	62, 819
Eco31I	GGTCTC	2 cut(s)	581, 779
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	4 cut(s)	161, 579, 774, 792
EcoT22I	ATGCAT	1 cut(s)	941
Esp3I	CGTCTC	2 cut(s)	616, 839
FaeI	CATG	5 cut(s)	301, 314, 839, 943, 964
FatI	CATG	5 cut(s)	297, 310, 835, 939, 960
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	95, 134, 888
FokI	GGATG	2 cut(s)	434, 438
Fsp4HI	GCNGC	3 cut(s)	95, 134, 888
GluI	GCNGC	3 cut(s)	95, 134, 888
GsuI	CTGGAG	1 cut(s)	374
Hin1II	CATG	5 cut(s)	301, 314, 839, 943, 964
HinfI	GANTC	6 cut(s)	118, 143, 219, 398, 875, 993
HphI	GGTGA	4 cut(s)	35, 89, 139, 806
Hpy188I	TCNGA	4 cut(s)	148, 180, 246, 648
HpyAV	CCTTC	7 cut(s)	175, 362, 412, 502, 528, 703, 901
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	3 cut(s)	653, 820, 828
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 689, 698, 896
HpyF3I	CTNAG	7 cut(s)	36, 99, 280, 344, 360, 378, 585
HpySE526I	ACGT	3 cut(s)	653, 820, 828
Hsp92II	CATG	5 cut(s)	301, 314, 839, 943, 964
Kzo9I	GATC	2 cut(s)	276, 445
LmnI	GCTCC	1 cut(s)	682
LpnPI	CCDG	8 cut(s)	18, 110, 287, 338, 597, 693, 746, 819
Lsp1109I	GCAGC	3 cut(s)	106, 145, 899
MaeII	ACGT	3 cut(s)	653, 820, 828
MaeIII	GTNAC	4 cut(s)	56, 794, 821, 1003
MalI	GATC	2 cut(s)	278, 447
MboI	GATC	2 cut(s)	276, 445
MboII	GAAGA	8 cut(s)	79, 167, 572, 575, 587, 767, 785, 806
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	6 cut(s)	30, 137, 247, 603, 801, 955
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	7 cut(s)	63, 108, 349, 355, 518, 627, 667
Mph1103I	ATGCAT	1 cut(s)	941
MseI	TTAA	4 cut(s)	374, 501, 552, 746
MslI	CAYNNNNRTG	1 cut(s)	840
MwoI	GCNNNNNNNGC	4 cut(s)	100, 689, 698, 896
NdeII	GATC	2 cut(s)	276, 445
NlaIII	CATG	5 cut(s)	301, 314, 839, 943, 964
NlaIV	GGNNCC	1 cut(s)	678
NmuCI	GTSAC	2 cut(s)	794, 821
NsiI	ATGCAT	1 cut(s)	941
PfeI	GAWTC	5 cut(s)	118, 143, 219, 875, 993
PkrI	GCNGC	3 cut(s)	96, 135, 889
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	821
Psp1406I	AACGTT	1 cut(s)	653
PspN4I	GGNNCC	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	3 cut(s)	186, 237, 288
RsaNI	GTAC	3 cut(s)	185, 236, 287
RseI	CAYNNNNRTG	1 cut(s)	840
SaqAI	TTAA	4 cut(s)	374, 501, 552, 746
SatI	GCNGC	3 cut(s)	95, 134, 888
Sau3AI	GATC	2 cut(s)	276, 445
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	407
SfcI	CTRYAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	2 cut(s)	214, 529
SmoI	CTYRAG	2 cut(s)	214, 529
Sse9I	AATT	6 cut(s)	30, 137, 247, 603, 801, 955
SsiI	CCGC	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	3 cut(s)	656, 823, 831
TaqI	TCGA	4 cut(s)	47, 116, 448, 495
TasI	AATT	6 cut(s)	30, 137, 247, 603, 801, 955
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	5 cut(s)	118, 143, 219, 875, 993
Tru1I	TTAA	4 cut(s)	374, 501, 552, 746
Tru9I	TTAA	4 cut(s)	374, 501, 552, 746
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	2 cut(s)	794, 821
TseI	GCWGC	3 cut(s)	94, 133, 887
Tsp45I	GTSAC	2 cut(s)	794, 821
TspDTI	ATGAA	5 cut(s)	327, 626, 648, 824, 957
TspGWI	ACGGA	2 cut(s)	79, 587
TspRI	CASTG	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	3 cut(s)	247, 603, 801
Zsp2I	ATGCAT	1 cut(s)	941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.