Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

21349501 .. 21352987

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1100300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGGAAGGTCTCATCATTCTCGATACGGAGAACGGCGCCGCCGGAGACAACAAGGCAAAAGGAGGGAAAATTTCTAAAGGATTGTCGATTGGAAGTAGCTCACGGAAGAGGCTTGCTGATATTAGCAACTTGCAGCAGCAGTGGCCGAAACCATCAGTTCAACAGGAGAAGCAGCAATTTGATTCAGATACAAATAAAGAGTATATTGACAATCTTCAGAAGGAAAATAGGACACTGATGAAACTTCTTACTGACAGAAACAAAATCATAGAATTGAGCAGAGTGGAGATACAGAAGTTGAGAATCAATCTGCAGAAAGTACAACAACAAAATTTGCAACTTGCCCAAGCAAATAGCCAGATCGTAGGGCTAAAAGCACTTCAGCATGAAATTGGATGCAAAAATGGTTTGCTGAATGTGAGAAAACTGGAGGCTGAGGGGAGAGCGAAAAGAGTAACGTGCCAAAGTAAAGAAAATCAGGTAGAAGGTTCAACTAAGTGTGTTGAAGCAGGGGAGTCCTTGCAAGCAGACAGCGAGGATGGGCCTTGTAATACCAAAAGGGGACGACATCCAAAAAACCCACCTGTGGCTTCTCATACTGTTGAAGCGGTCGAAGTTAAAGTGAAGGCTGACAACAAAAGGTTTTCTGCAAGGTTTAAAACTGAAGAACATGAAGCAACTGAAGAAATGCTTGCGACCAATGTTGGAAAAATTCCTGTCTCTCCTATATGCGATAATGTGGTTCATGAAAGTGAGATGGCATTTTCATTAGTGGACAAAGAGGCTCCTACAATTGAAGCAGTCCAAGCTAACGAGAAGGCTAACAACAAAAGACGTTTTACAAGGCAGTCTGCAAGGTTAAAAACTGAAGAACAGGAAGCAAATGAATTTTTTTTTGAGACCAATGGTTACAAAATTCCCGTCTCTCCTCTATGTGACAATGTAGTTCATGAAAGTGAGACTACATGTTCACCGGGGGAAAAAGAGGATCCTACGATTGAAGAACTCCAACCTAAAGGGAAGGCCGAGAACAAAAGGCGTTTTACGAGGCAATCTGCAAGGTTAAAAACTGAAGAACAGGCGCCTGAAGTGTTGTTTGAGACCAATGGCGAAGAGTTTCCCGTCCCTCCTCCATGTCAAAATGTTGCTCATGAAAGTGCTCCGACATGCTCAATGGCGGAAAAAGAGGATCCTATTACTGAAGCTGTCCATGATAAAGAGAAGGCGGACAACAAAAGACGCTTGACAAGGCAGTCCACAAAGTTTAAAACTGAAGAACGGGGAGCAACTGAAGCGTCGTTTGAGATCAACGATGACACAGTCCATGCCTCTTCTCTAAGTGACGAAGTGGTTCATGAAAGTGGTTTGACTTGTTCTTCAGTGAAAAAGGACGATGGCGGATACATTGACCCGAGATCTGAAGGCCAGGAATGTCGAAAATCATCTGCCAGGCCACTGCGCCGAGCAACGCAGAAGATTCAGTCATACAAGGAAATTCCAGTTAATGTGAAGATGCGCAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

509

Amino Acids

56.9

Weight (kDa)

6.45

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	483 - 507	1.2e-08	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1252
Acc16I	TGCGCA	1 cut(s)	1517
AccB1I	GGYRCC	2 cut(s)	35, 1081
AciI	CCGC	5 cut(s)	39, 608, 1178, 1226, 1398
AclWI	GGATC	4 cut(s)	983, 996, 1184, 1197
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	6 cut(s)	69, 331, 711, 887, 915, 1494
AcyI	GRCGYC	2 cut(s)	36, 1082
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	965
AgsI	TTSAA	6 cut(s)	161, 492, 506, 605, 797, 1001
AjnI	CCWGG	2 cut(s)	1425, 1448
AluBI	AGCT	3 cut(s)	99, 809, 1205
AluI	AGCT	3 cut(s)	99, 809, 1205
Alw21I	GWGCWC	1 cut(s)	1162
Alw26I	GTCTC	7 cut(s)	14, 39, 724, 893, 928, 953, 1094
AlwI	GGATC	4 cut(s)	983, 996, 1184, 1197
Ama87I	CYCGRG	1 cut(s)	1411
AoxI	GGCC	5 cut(s)	143, 542, 1023, 1423, 1451
ApeKI	GCWGC	3 cut(s)	133, 136, 172
ApoI	RAATTY	6 cut(s)	69, 331, 711, 887, 915, 1494
ArsI	GACNNNNNNTTYG	2 cut(s)	906, 938
Asp700I	GAANNNNTTC	2 cut(s)	1116, 1350
AspLEI	GCGC	4 cut(s)	38, 1084, 1461, 1518
AspS9I	GGNCC	1 cut(s)	542
AsuC2I	CCSGG	1 cut(s)	975
AsuHPI	GGTGA	1 cut(s)	963
AvaI	CYCGRG	1 cut(s)	1411
BaeI	ACNNNNGTAYC	2 cut(s)	281, 314
BamHI	GGATCC	2 cut(s)	988, 1189
BanI	GGYRCC	2 cut(s)	35, 1081
Bbv12I	GWGCWC	1 cut(s)	1162
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	3 cut(s)	145, 148, 184
BccI	CCATC	4 cut(s)	160, 533, 751, 1388
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	1427, 1450
BciVI	GTATCC	1 cut(s)	1394
BcnI	CCSGG	1 cut(s)	975
BcoDI	GTCTC	7 cut(s)	14, 39, 724, 893, 928, 953, 1094
BfmI	CTRYAG	1 cut(s)	311
BfoI	RGCGCY	2 cut(s)	39, 1085
BfuI	GTATCC	1 cut(s)	1394
BglII	AGATCT	1 cut(s)	1415
BisI	GCNGC	4 cut(s)	39, 134, 137, 173
BlsI	GCNGC	4 cut(s)	40, 135, 138, 174
Bme1390I	CCNGG	3 cut(s)	975, 1427, 1450
BmeT110I	CYCGRG	1 cut(s)	1411
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	5 cut(s)	37, 786, 990, 1083, 1191
BmrFI	CCNGG	3 cut(s)	975, 1427, 1450
BmsI	GCATC	2 cut(s)	386, 1503
BpmI	CTGGAG	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	975
BsaHI	GRCGYC	2 cut(s)	36, 1082
BsaI	GGTCTC	3 cut(s)	14, 893, 1094
BsaJI	CCNNGG	1 cut(s)	974
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	2 cut(s)	432, 1499
BseBI	CCWGG	2 cut(s)	1427, 1450
BseDI	CCNNGG	1 cut(s)	974
BseGI	GGATG	3 cut(s)	401, 544, 568
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	432, 1499
BseRI	GAGGAG	2 cut(s)	918, 1119
BseXI	GCAGC	3 cut(s)	145, 148, 184
Bsh1285I	CGRYCG	1 cut(s)	612
BshFI	GGCC	5 cut(s)	145, 544, 1025, 1425, 1453
BshNI	GGYRCC	2 cut(s)	35, 1081
BsiEI	CGRYCG	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	1162
BsiHKCI	CYCGRG	1 cut(s)	1411
BsiSI	CCGG	2 cut(s)	42, 974
BslFI	GGGAC	2 cut(s)	576, 1109
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	7 cut(s)	14, 39, 724, 893, 928, 953, 1094
BsmBI	CGTCTC	1 cut(s)	928
BsmFI	GGGAC	2 cut(s)	576, 1109
BsnI	GGCC	5 cut(s)	145, 544, 1025, 1425, 1453
Bso31I	GGTCTC	3 cut(s)	14, 893, 1094
BsoBI	CYCGRG	1 cut(s)	1411
Bsp1286I	GDGCHC	1 cut(s)	1162
Bsp143I	GATC	5 cut(s)	360, 988, 1189, 1305, 1415
BspACI	CCGC	5 cut(s)	39, 608, 1178, 1226, 1398
BspANI	GGCC	5 cut(s)	145, 544, 1025, 1425, 1453
BspCNI	CTCAG	1 cut(s)	427
BspHI	TCATGA	4 cut(s)	745, 949, 1150, 1354
BspLI	GGNNCC	5 cut(s)	37, 786, 990, 1083, 1191
BspMAI	CTGCAG	1 cut(s)	315
BspPI	GGATC	4 cut(s)	983, 996, 1184, 1197
BspT107I	GGYRCC	2 cut(s)	35, 1081
BspTNI	GGTCTC	3 cut(s)	14, 893, 1094
BsrI	ACTGG	2 cut(s)	432, 1499
BssECI	CCNNGG	1 cut(s)	974
BssMI	GATC	5 cut(s)	360, 988, 1189, 1305, 1415
BssNI	GRCGYC	2 cut(s)	36, 1082
Bst2UI	CCWGG	2 cut(s)	1427, 1450
Bst4CI	ACNGT	2 cut(s)	601, 1321
Bst6I	CTCTTC	3 cut(s)	101, 1107, 1336
BstACI	GRCGYC	2 cut(s)	36, 1082
BstC8I	GCNNGC	3 cut(s)	114, 525, 693
BstDEI	CTNAG	3 cut(s)	435, 495, 1337
BstF5I	GGATG	3 cut(s)	401, 544, 568
BstH2I	RGCGCY	2 cut(s)	39, 1085
BstHHI	GCGC	4 cut(s)	38, 1084, 1461, 1518
BstKTI	GATC	5 cut(s)	363, 991, 1192, 1308, 1418
BstMAI	GTCTC	7 cut(s)	14, 39, 724, 893, 928, 953, 1094
BstMBI	GATC	5 cut(s)	360, 988, 1189, 1305, 1415
BstMCI	CGRYCG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 806, 1292
BstNI	CCWGG	2 cut(s)	1427, 1450
BstNSI	RCATGY	2 cut(s)	969, 1170
BstSCI	CCNGG	3 cut(s)	973, 1425, 1448
BstSFI	CTRYAG	1 cut(s)	311
BstV1I	GCAGC	3 cut(s)	145, 148, 184
BstX2I	RGATCY	3 cut(s)	988, 1189, 1415
BstYI	RGATCY	3 cut(s)	988, 1189, 1415
BsuI	GTATCC	1 cut(s)	1394
BsuRI	GGCC	5 cut(s)	145, 544, 1025, 1425, 1453
BtsCI	GGATG	3 cut(s)	401, 544, 568
BtsI	GCAGTG	2 cut(s)	146, 1454
BtsIMutI	CAGTG	4 cut(s)	146, 233, 1386, 1454
Cac8I	GCNNGC	3 cut(s)	114, 525, 693
CciI	TCATGA	4 cut(s)	745, 949, 1150, 1354
CfoI	GCGC	4 cut(s)	38, 1084, 1461, 1518
Cfr13I	GGNCC	1 cut(s)	542
CseI	GACGC	2 cut(s)	1248, 1284
Csp6I	GTAC	1 cut(s)	320
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	435, 495, 1337
DinI	GGCGCC	2 cut(s)	37, 1083
DpnI	GATC	5 cut(s)	362, 990, 1191, 1307, 1417
DpnII	GATC	5 cut(s)	360, 988, 1189, 1305, 1415
DraI	TTTAAA	2 cut(s)	658, 1267
DrdI	GACNNNNNNGTC	1 cut(s)	1252
DseDI	GACNNNNNNGTC	1 cut(s)	1252
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	3 cut(s)	101, 1107, 1336
EarI	CTCTTC	3 cut(s)	101, 1107, 1336
EciI	GGCGGA	3 cut(s)	1193, 1241, 1413
Eco31I	GGTCTC	3 cut(s)	14, 893, 1094
Eco88I	CYCGRG	1 cut(s)	1411
EcoRII	CCWGG	2 cut(s)	1425, 1448
EgeI	GGCGCC	2 cut(s)	37, 1083
EheI	GGCGCC	2 cut(s)	37, 1083
Esp3I	CGTCTC	1 cut(s)	928
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FaqI	GGGAC	2 cut(s)	576, 1109
Fnu4HI	GCNGC	4 cut(s)	39, 134, 137, 173
FokI	GGATG	3 cut(s)	408, 551, 555
Fsp4HI	GCNGC	4 cut(s)	39, 134, 137, 173
FspI	TGCGCA	1 cut(s)	1517
GlaI	GCGC	4 cut(s)	37, 1083, 1460, 1517
GluI	GCNGC	4 cut(s)	39, 134, 137, 173
GsuI	CTGGAG	1 cut(s)	449
HaeII	RGCGCY	2 cut(s)	39, 1085
HaeIII	GGCC	5 cut(s)	145, 544, 1025, 1425, 1453
HapII	CCGG	2 cut(s)	42, 974
HgaI	GACGC	2 cut(s)	1248, 1284
HhaI	GCGC	4 cut(s)	38, 1084, 1461, 1518
Hin1I	GRCGYC	2 cut(s)	36, 1082
Hin6I	GCGC	4 cut(s)	36, 1082, 1459, 1516
HinP1I	GCGC	4 cut(s)	36, 1082, 1459, 1516
HinfI	GANTC	4 cut(s)	182, 303, 515, 1477
HpaII	CCGG	2 cut(s)	42, 974
HphI	GGTGA	1 cut(s)	963
Hpy166II	GTNNAC	3 cut(s)	775, 971, 1257
Hpy188I	TCNGA	4 cut(s)	187, 219, 1164, 1420
Hpy188III	TCNNGA	5 cut(s)	20, 746, 950, 1151, 1355
Hpy8I	GTNNAC	3 cut(s)	775, 971, 1257
Hpy99I	CGWCG	1 cut(s)	1300
HpyAV	CCTTC	7 cut(s)	214, 479, 619, 811, 1015, 1216, 1415
HpyCH4III	ACNGT	2 cut(s)	601, 1321
HpyCH4IV	ACGT	2 cut(s)	458, 835
HpyCH4V	TGCA	8 cut(s)	133, 313, 337, 399, 523, 650, 854, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 806, 1292
HpyF3I	CTNAG	3 cut(s)	435, 495, 1337
HpySE526I	ACGT	2 cut(s)	458, 835
Hsp92I	GRCGYC	2 cut(s)	36, 1082
HspAI	GCGC	4 cut(s)	36, 1082, 1459, 1516
KasI	GGCGCC	2 cut(s)	35, 1081
Kzo9I	GATC	5 cut(s)	360, 988, 1189, 1305, 1415
LmnI	GCTCC	3 cut(s)	790, 1165, 1283
Lsp1109I	GCAGC	3 cut(s)	145, 148, 184
LweI	GCATC	2 cut(s)	386, 1503
MaeII	ACGT	2 cut(s)	458, 835
MaeIII	GTNAC	4 cut(s)	454, 908, 935, 1340
MalI	GATC	5 cut(s)	362, 990, 1191, 1307, 1417
MboI	GATC	5 cut(s)	360, 988, 1189, 1305, 1415
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	3 cut(s)	988, 1189, 1415
MhlI	GDGCHC	1 cut(s)	1162
Mly113I	GGCGCC	2 cut(s)	36, 1082
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	3 cut(s)	685, 1033, 1187
MroXI	GAANNNNTTC	2 cut(s)	1116, 1350
MseI	TTAA	6 cut(s)	618, 657, 860, 1064, 1266, 1503
MslI	CAYNNNNRTG	4 cut(s)	750, 954, 1155, 1359
MspI	CCGG	2 cut(s)	42, 974
MspR9I	CCNGG	3 cut(s)	975, 1427, 1450
MunI	CAATTG	1 cut(s)	792
MvaI	CCWGG	2 cut(s)	1427, 1450
MwoI	GCNNNNNNNGC	3 cut(s)	142, 806, 1292
NarI	GGCGCC	2 cut(s)	36, 1082
NciI	CCSGG	1 cut(s)	975
NdeII	GATC	5 cut(s)	360, 988, 1189, 1305, 1415
NlaIV	GGNNCC	5 cut(s)	37, 786, 990, 1083, 1191
NmeAIII	GCCGAG	2 cut(s)	1051, 1487
NmuCI	GTSAC	2 cut(s)	935, 1340
NsbI	TGCGCA	1 cut(s)	1517
NspI	RCATGY	2 cut(s)	969, 1170
PagI	TCATGA	4 cut(s)	745, 949, 1150, 1354
PciI	ACATGT	1 cut(s)	965
PdmI	GAANNNNTTC	2 cut(s)	1116, 1350
PfeI	GAWTC	3 cut(s)	182, 303, 1477
PflFI	GACNNNGTC	1 cut(s)	1319
PkrI	GCNGC	4 cut(s)	40, 135, 138, 174
PleI	GAGTC	1 cut(s)	523
PluTI	GGCGCC	2 cut(s)	39, 1085
PpsI	GAGTC	1 cut(s)	523
PscI	ACATGT	1 cut(s)	965
Psp6I	CCWGG	2 cut(s)	1425, 1448
PspGI	CCWGG	2 cut(s)	1425, 1448
PspN4I	GGNNCC	5 cut(s)	37, 786, 990, 1083, 1191
PspPI	GGNCC	1 cut(s)	542
PstI	CTGCAG	1 cut(s)	315
PsuI	RGATCY	3 cut(s)	988, 1189, 1415
PsyI	GACNNNGTC	1 cut(s)	1319
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	4 cut(s)	750, 954, 1155, 1359
SaqAI	TTAA	6 cut(s)	618, 657, 860, 1064, 1266, 1503
SatI	GCNGC	4 cut(s)	39, 134, 137, 173
Sau3AI	GATC	5 cut(s)	360, 988, 1189, 1305, 1415
Sau96I	GGNCC	1 cut(s)	542
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	3 cut(s)	975, 1427, 1450
SduI	GDGCHC	1 cut(s)	1162
SfaNI	GCATC	2 cut(s)	386, 1503
SfcI	CTRYAG	1 cut(s)	311
SfoI	GGCGCC	2 cut(s)	37, 1083
SmiMI	CAYNNNNRTG	4 cut(s)	750, 954, 1155, 1359
SsiI	CCGC	5 cut(s)	39, 608, 1178, 1226, 1398
SspDI	GGCGCC	2 cut(s)	35, 1081
StyD4I	CCNGG	3 cut(s)	973, 1425, 1448
TaaI	ACNGT	2 cut(s)	601, 1321
TaiI	ACGT	2 cut(s)	461, 838
TaqI	TCGA	4 cut(s)	21, 86, 612, 1435
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	3 cut(s)	182, 303, 1477
Tru1I	TTAA	6 cut(s)	618, 657, 860, 1064, 1266, 1503
Tru9I	TTAA	6 cut(s)	618, 657, 860, 1064, 1266, 1503
TscAI	CASTG	4 cut(s)	146, 240, 1386, 1461
TseFI	GTSAC	2 cut(s)	935, 1340
TseI	GCWGC	3 cut(s)	133, 136, 172
Tsp45I	GTSAC	2 cut(s)	935, 1340
TspGWI	ACGGA	2 cut(s)	41, 118
TspRI	CASTG	4 cut(s)	146, 240, 1386, 1461
Tth111I	GACNNNGTC	1 cut(s)	1319
XapI	RAATTY	6 cut(s)	69, 331, 711, 887, 915, 1494
XceI	RCATGY	2 cut(s)	969, 1170
XmnI	GAANNNNTTC	2 cut(s)	1116, 1350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.