Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

41099278 .. 41101852

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0295400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2496 bp

ATGAACTACAATCTATCACACTCAAAACCCCTCCTCCACCTTCTTAAACCTCAAACCCCAAAATCCAAAATCCCAGTCTTCATCCTCCGCCACCACCTCTGCACCAATCTCAGCCCCAATCCGAACCAACCACCCCAAGACGACGACACCTTCATAACCCAAGTGCTCCAACTCCTCCAACCCAATGAGAAAGACTGGAACTTTGACCACCTCCACACCCTCCTCTTCTCCAACTCAACCTCTCCTTCACCTCACTCCGTCTTCCACATCACTCGCCGCCTCGGCGCTCCGTCCAAAGCCATCAAATTCTTCGATTACATCTCCGAAAATGTTGGACCAACCACCCCTCCAGGCTCCAATGGTTTGCTCTCCTCCGCATTCCAGGCCGTTCTGGAGCTCACATCGCAACAACCCACATCGGAAAAGAAGCTCATTGAGCTTTACGAGATGGCGAAGAAGCGGAATGTGGCGCTTGATGTAAACGCCGCAGCTCTGCTTGTTCGGTCCCTGGGAACTGCTGGCATGGAGGACGAGGCTGTCATGGTGTTTAATGAACTCGATTCGGGGTTGAAGAACACTCATATTCGCAATGTGGTGATTAGGTTGTTGCTGAACATGGGGCGAGTTGATGATGCACTGAAGGTGCTCGACGAAATGCTTGACCCAGAAGCAAAGTTCCGGGTTGACGATTTTACCGGGGATATTGTGATTGGCTCATTGTTGAGGAAAGAGCAGAGAGGGAGGAGAGTCAGTGTGGAGGAAATTGTGGACTTGGTGTCGAAATTTGGTAAGCATGGTGTGTTTCCTAATAGCCCGATACTTACGAAATTGGTGACTGTTTTGTGTAGGAAGGGAAAGGTTAGCCGTGCTTGGGAGGTTTTACATGATATCATGGAGATGGGGGGTGGTGCTGTAGAAGCTGCTTCTTGCAATGCGCTTTTGACAGCTTTGGGAAGAGGTAATGATTTTAAGAGGATGAGTGAGCTTATGGTGAAGATGGAAGAGATAGGCATTAAGCCCAATCTTATAACTTTTGGTATTCTTATAAATCGTTTATGTAAGTCTGGGAGAATAGATGCTGCCTTGGAGGTGTTTGAGAAGATGAGTGGAGGAGTAAAGGGGGTTTCGGCTAAACCGGATGTGATTATCTATAACACTTTGATTGATGGACTTTGTAAAGCAGGAAGGCCAGAAGAGGGATTGCGTTTGATGGGAAAGATGAAATCGCAAGATGGCTGTGCTCCAAATACTGTTACGTACAATTGTTTGATTGATGGTTTCAACAAAGTTGGGGACATTGAGAGGGGTCGTGAGCTTTTTGACAAAATGAAGGAGGAAGGGATACCGCTAAATGTGGTCACCCTCAATACTTTGCTTGATGGTTTGTGCAGGCATGGGAGACTCAACACTGCACTTGAGTTCTTCAAGGAGATGCAGAGGGATGGTCTGAAAGGCAATGCCATTACTTACACTATCTTAATCACTTCCTTTTGTAATGTGAACAATATTAGCAAGGCAATGGAGTTGTTTGATCAGATGTTGAGCGCTGAATGTCCCACAGATGCAAAAGTTTATCACTGCTTGATCTCTGGTTTAAGCCTAGCCGGAAGGATGGAGGATGCCAGCTTTGTTGTCTCAAAGTTGAAGGAGGCTGGGTTCTCCATGGATAATGTTTCCTACAATGTAATGATTAATGGGTTCTCCAGTAAAAATAAGCCTGATAAGATTCATGAGATGATTGAGGAAATGGAAGCGTCTGGAGTGAAGCCTGATAGTGTGACATACAACACCTTGCTTGCCTACTTAAGCAAAGCTGGGGACTTCCAAAGTGCACATAAAGTACTTGACAGGATGAGGGATGAGGGTATTGTTCCCACTGTGGTCACTTTTGGTACATTGATTCATGCACATTGCTTGGATGGCGATATTGACAAAGCCATGAGAATCTTCAGAGACATGGGTTCTAAGTCAAAGATACCTCCGAATACTGTAATATACAATGATTTAATAAATTCTCTTTGCAAGAAGAATGATGTGGAACAAGCTCTTTATTTGATGGATGATATGAAGGATAAGGGGGTGAGACCTAATACCCAAACGTTCAATGCCTTGTTCAAAGGCCTTAGAGAGAACAATTTATTAGAGAAGGCATTTCAATTTATGGATCGAATGGTTGAACAGGCCTGTAATCCTGATTATATAACGATGGAAATTCTCACCGAATGGCTTTCTTGTGTTGGTGAAATACGGAGGTTGAGAAAGTTTGTTCAAGGATATCCGGTTTCAAAGACAGAGGGCAAAGCGGCTGGTTTCAAAGCAACAGAGGGAAAAGTCACTGGTTTCAAAGCGACAGAGGCAAAGCCCGCTGGTTTCAAAGCAACAGAAGGGAAACCCGCTGGTTTCAAAGCAACAGAAGGGAACCCCGCTGGTTTCAAAGCGACAGAGGGCAAAGCCGCTGGTTTCAAAGCGACAGAAGACAACGTTAACACTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

831

Amino Acids

91.89

Weight (kDa)

7.81

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	308 - 350	6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	308 - 354	3.6e-08	PPR repeat family
PPR_1	PF12854	337 - 369	9.9e-12	PPR repeat
PPR_3	PF13812	378 - 425	1.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	378 - 408	1.1e-10	PPR repeat
PPR_2	PF13041	379 - 428	1.6e-16	PPR repeat family
PPR	PF01535	383 - 409	1.3e-07	PPR repeat
PPR_1	PF12854	411 - 444	6.7e-10	PPR repeat
TPR_24	PF23276	413 - 512	3.1e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	415 - 464	2.8e-16	PPR repeat family
PPR	PF01535	418 - 448	6e-08	PPR repeat
PPR_3	PF13812	439 - 484	5.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	447 - 479	4.3e-12	PPR repeat
PPR_2	PF13041	451 - 499	1.9e-17	PPR repeat family
PPR	PF01535	453 - 483	2.7e-08	PPR repeat
PPR_1	PF12854	482 - 513	1.8e-09	PPR repeat
PPR_2	PF13041	486 - 532	9.4e-10	PPR repeat family
PPR	PF01535	488 - 517	9.9e-06	PPR repeat
PPR_long	PF17177	494 - 626	3.7e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	522 - 568	4.8e-07	PPR repeat family
TPR_24	PF23276	535 - 652	1.4e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	556 - 599	6e-13	PPR repeat family
PPR	PF01535	558 - 588	5.2e-06	PPR repeat
PPR_long	PF17177	558 - 655	2e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	580 - 636	3.1e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	587 - 619	4e-07	PPR repeat
PPR_2	PF13041	590 - 638	1.1e-14	PPR repeat family
PPR_1	PF12854	622 - 653	6e-11	PPR repeat
PPR_2	PF13041	625 - 662	3.8e-06	PPR repeat family
PPR_long	PF17177	633 - 743	2.1e-08	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	658 - 730	9.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	659 - 690	1.6e-08	PPR repeat
PPR_2	PF13041	661 - 708	4.1e-17	PPR repeat family
PPR	PF01535	664 - 694	4.4e-06	PPR repeat
Decapeptide	PF25296	765 - 823	1.1e-10	Decapeptide repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1028, 1046
AasI	GACNNNNNNGTC	1 cut(s)	536
AclI	AACGTT	2 cut(s)	2099, 2481
AclWI	GGATC	1 cut(s)	2172
AcsI	RAATTY	4 cut(s)	305, 782, 2011, 2211
AcuI	CTGAAG	2 cut(s)	659, 1933
AfaI	GTAC	3 cut(s)	1259, 1842, 1894
AfeI	AGCGCT	1 cut(s)	1546
AfiI	CCNNNNNNNGG	2 cut(s)	871, 1196
AflII	CTTAAG	1 cut(s)	1804
AhdI	GACNNNNNGTC	1 cut(s)	775
AjnI	CCWGG	3 cut(s)	349, 381, 507
AloI	GAACNNNNNNTCC	2 cut(s)	1640, 1672
Alw21I	GWGCWC	5 cut(s)	168, 399, 648, 1243, 1834
Alw26I	GTCTC	4 cut(s)	1393, 1639, 1947, 2077
Alw44I	GTGCAC	1 cut(s)	1830
AlwI	GGATC	1 cut(s)	2172
Aor51HI	AGCGCT	1 cut(s)	1546
AoxI	GGCC	4 cut(s)	384, 1187, 2119, 2181
ApaLI	GTGCAC	1 cut(s)	1830
ApeKI	GCWGC	3 cut(s)	488, 920, 1079
ApoI	RAATTY	4 cut(s)	305, 782, 2011, 2211
ArsI	GACNNNNNNTTYG	4 cut(s)	60, 92, 185, 217
AseI	ATTAAT	1 cut(s)	1692
AspLEI	GCGC	4 cut(s)	287, 472, 937, 1547
AspS9I	GGNCC	2 cut(s)	335, 504
AsuC2I	CCSGG	2 cut(s)	680, 697
AsuHPI	GGTGA	8 cut(s)	240, 607, 844, 1003, 1351, 2092, 2209, 2252
AvaII	GGWCC	2 cut(s)	335, 504
BaeGI	GKGCMC	1 cut(s)	1834
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	3 cut(s)	70, 253, 2481
Bbv12I	GWGCWC	5 cut(s)	168, 399, 648, 1243, 1834
BbvI	GCAGC	3 cut(s)	500, 907, 1066
BceAI	ACGGC	2 cut(s)	371, 849
BciT130I	CCWGG	3 cut(s)	351, 383, 509
BciVI	GTATCC	1 cut(s)	1335
BclI	TGATCA	1 cut(s)	1531
BcnI	CCSGG	2 cut(s)	680, 697
BcoDI	GTCTC	4 cut(s)	1393, 1639, 1947, 2077
BfaI	CTAG	1 cut(s)	1601
BfmI	CTRYAG	1 cut(s)	912
BfoI	RGCGCY	3 cut(s)	288, 473, 1548
BfrI	CTTAAG	1 cut(s)	1804
BfuI	GTATCC	1 cut(s)	1335
BglI	GCCNNNNNGGC	1 cut(s)	282
BisI	GCNGC	7 cut(s)	277, 486, 489, 921, 1080, 2304, 2454
BlsI	GCNGC	7 cut(s)	278, 487, 490, 922, 1081, 2305, 2455
BmcAI	AGTACT	1 cut(s)	1842
Bme1390I	CCNGG	5 cut(s)	351, 383, 509, 680, 697
Bme18I	GGWCC	2 cut(s)	335, 504
BmeRI	GACNNNNNGTC	1 cut(s)	775
BmgT120I	GGNCC	2 cut(s)	335, 504
BmiI	GGNNCC	3 cut(s)	355, 506, 2420
BmrFI	CCNGG	5 cut(s)	351, 383, 509, 680, 697
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	5 cut(s)	622, 1066, 1422, 1552, 1609
BmuI	ACTGGG	1 cut(s)	68
BpiI	GAAGAC	3 cut(s)	70, 253, 2481
BpmI	CTGGAG	4 cut(s)	333, 413, 1687, 1779
BpuEI	CTTGAG	1 cut(s)	1436
BpuMI	CCSGG	2 cut(s)	680, 697
BsaAI	YACGTR	1 cut(s)	1257
BsaI	GGTCTC	1 cut(s)	2077
BsaJI	CCNNGG	6 cut(s)	280, 507, 508, 696, 1083, 1662
BsaWI	WCCGGW	2 cut(s)	1135, 2278
BsaXI	ACNNNNNCTCC	8 cut(s)	18, 48, 331, 361, 736, 766, 1640, 1670
Bsc4I	CCNNNNNNNGG	2 cut(s)	871, 1196
Bse1I	ACTGG	4 cut(s)	74, 200, 1704, 2341
Bse3DI	GCAATG	5 cut(s)	595, 937, 1462, 1524, 1909
BseBI	CCWGG	3 cut(s)	351, 383, 509
BseDI	CCNNGG	6 cut(s)	280, 507, 508, 696, 1083, 1662
BseLI	CCNNNNNNNGG	2 cut(s)	871, 1196
BseMI	GCAATG	5 cut(s)	595, 937, 1462, 1524, 1909
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	4 cut(s)	74, 200, 1704, 2341
BseRI	GAGGAG	6 cut(s)	23, 164, 212, 361, 757, 1125
BseSI	GKGCMC	1 cut(s)	1834
BseXI	GCAGC	3 cut(s)	500, 907, 1066
BseYI	CCCAGC	2 cut(s)	1652, 1814
BsgI	GTGCAG	3 cut(s)	85, 1395, 1408
BshFI	GGCC	4 cut(s)	386, 1189, 2121, 2183
BsiHKAI	GWGCWC	5 cut(s)	168, 399, 648, 1243, 1834
BsiSI	CCGG	5 cut(s)	679, 696, 1136, 1605, 2279
BslFI	GGGAC	4 cut(s)	490, 1307, 1539, 1832
BslI	CCNNNNNNNGG	2 cut(s)	871, 1196
BsmAI	GTCTC	4 cut(s)	1393, 1639, 1947, 2077
BsmFI	GGGAC	4 cut(s)	490, 1307, 1539, 1832
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	4 cut(s)	386, 1189, 2121, 2183
Bso31I	GGTCTC	1 cut(s)	2077
Bsp1286I	GDGCHC	5 cut(s)	168, 399, 648, 1243, 1834
Bsp143I	GATC	3 cut(s)	1531, 1584, 2164
Bsp19I	CCATGG	1 cut(s)	1662
BspANI	GGCC	4 cut(s)	386, 1189, 2121, 2183
BspCNI	CTCAG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	1729
BspLI	GGNNCC	3 cut(s)	355, 506, 2420
BspPI	GGATC	1 cut(s)	2172
BspTI	CTTAAG	1 cut(s)	1804
BspTNI	GGTCTC	1 cut(s)	2077
BsrDI	GCAATG	5 cut(s)	595, 937, 1462, 1524, 1909
BsrI	ACTGG	4 cut(s)	74, 200, 1704, 2341
BssECI	CCNNGG	6 cut(s)	280, 507, 508, 696, 1083, 1662
BssMI	GATC	3 cut(s)	1531, 1584, 2164
BssT1I	CCWWGG	2 cut(s)	1083, 1662
Bst2UI	CCWGG	3 cut(s)	351, 383, 509
Bst4CI	ACNGT	4 cut(s)	838, 1252, 1879, 1990
Bst6I	CTCTTC	4 cut(s)	230, 949, 996, 1188
BstAFI	CTTAAG	1 cut(s)	1804
BstBAI	YACGTR	1 cut(s)	1257
BstC8I	GCNNGC	5 cut(s)	520, 1391, 1624, 1797, 2364
BstDEI	CTNAG	3 cut(s)	110, 1965, 2123
BstDSI	CCRYGG	1 cut(s)	1662
BstEII	GGTNACC	1 cut(s)	1357
BstH2I	RGCGCY	3 cut(s)	288, 473, 1548
BstHHI	GCGC	4 cut(s)	287, 472, 937, 1547
BstKTI	GATC	3 cut(s)	1534, 1587, 2167
BstMAI	GTCTC	4 cut(s)	1393, 1639, 1947, 2077
BstMBI	GATC	3 cut(s)	1531, 1584, 2164
BstMWI	GCNNNNNNNGC	8 cut(s)	282, 383, 403, 436, 917, 1920, 2354, 2363
BstNI	CCWGG	3 cut(s)	351, 383, 509
BstPI	GGTNACC	1 cut(s)	1357
BstSCI	CCNGG	5 cut(s)	349, 381, 507, 678, 695
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	1 cut(s)	1834
BstSNI	TACGTA	1 cut(s)	1257
BstV1I	GCAGC	3 cut(s)	500, 907, 1066
BstV2I	GAAGAC	3 cut(s)	70, 253, 2481
BsuI	GTATCC	1 cut(s)	1335
BsuRI	GGCC	4 cut(s)	386, 1189, 2121, 2183
BtgI	CCRYGG	1 cut(s)	1662
BtgZI	GCGATG	1 cut(s)	387
BtsI	GCAGTG	2 cut(s)	1407, 1576
BtsIMutI	CAGTG	6 cut(s)	635, 757, 1407, 1576, 1875, 2334
Cac8I	GCNNGC	5 cut(s)	520, 1391, 1624, 1797, 2364
CciI	TCATGA	1 cut(s)	1729
CfoI	GCGC	4 cut(s)	287, 472, 937, 1547
Cfr13I	GGNCC	2 cut(s)	335, 504
CseI	GACGC	1 cut(s)	1743
Csp6I	GTAC	3 cut(s)	1258, 1841, 1893
CviQI	GTAC	3 cut(s)	1258, 1841, 1893
DdeI	CTNAG	3 cut(s)	110, 1965, 2123
DpnI	GATC	3 cut(s)	1533, 1586, 2166
DpnII	GATC	3 cut(s)	1531, 1584, 2164
DrdI	GACNNNNNNGTC	1 cut(s)	536
DriI	GACNNNNNGTC	1 cut(s)	775
DseDI	GACNNNNNNGTC	1 cut(s)	536
Eam1104I	CTCTTC	4 cut(s)	230, 949, 996, 1188
Eam1105I	GACNNNNNGTC	1 cut(s)	775
EarI	CTCTTC	4 cut(s)	230, 949, 996, 1188
EciI	GGCGGA	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	397
Eco105I	TACGTA	1 cut(s)	1257
Eco130I	CCWWGG	2 cut(s)	1083, 1662
Eco147I	AGGCCT	2 cut(s)	2121, 2183
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	2077
Eco32I	GATATC	2 cut(s)	889, 2276
Eco47I	GGWCC	2 cut(s)	335, 504
Eco47III	AGCGCT	1 cut(s)	1546
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	659, 1933
Eco91I	GGTNACC	1 cut(s)	1357
EcoICRI	GAGCTC	1 cut(s)	397
EcoO65I	GGTNACC	1 cut(s)	1357
EcoRII	CCWGG	3 cut(s)	349, 381, 507
EcoRV	GATATC	2 cut(s)	889, 2276
EcoT14I	CCWWGG	2 cut(s)	1083, 1662
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	2 cut(s)	1083, 1662
FaqI	GGGAC	4 cut(s)	490, 1307, 1539, 1832
FauI	CCCGC	3 cut(s)	2371, 2401, 2431
FbaI	TGATCA	1 cut(s)	1531
Fnu4HI	GCNGC	7 cut(s)	277, 486, 489, 921, 1080, 2304, 2454
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	7 cut(s)	277, 486, 489, 921, 1080, 2304, 2454
FspBI	CTAG	1 cut(s)	1601
GlaI	GCGC	4 cut(s)	286, 471, 936, 1546
GluI	GCNGC	7 cut(s)	277, 486, 489, 921, 1080, 2304, 2454
GsaI	CCCAGC	2 cut(s)	1656, 1818
GsuI	CTGGAG	4 cut(s)	333, 413, 1687, 1779
HaeII	RGCGCY	3 cut(s)	288, 473, 1548
HaeIII	GGCC	4 cut(s)	386, 1189, 2121, 2183
HapII	CCGG	5 cut(s)	679, 696, 1136, 1605, 2279
HgaI	GACGC	1 cut(s)	1743
HhaI	GCGC	4 cut(s)	287, 472, 937, 1547
Hin6I	GCGC	4 cut(s)	285, 470, 935, 1545
HinP1I	GCGC	4 cut(s)	285, 470, 935, 1545
HincII	GTYRAC	2 cut(s)	685, 2485
HindII	GTYRAC	2 cut(s)	685, 2485
HinfI	GANTC	6 cut(s)	560, 747, 1401, 1726, 1900, 1944
HpaI	GTTAAC	1 cut(s)	2485
HpaII	CCGG	5 cut(s)	679, 696, 1136, 1605, 2279
HphI	GGTGA	8 cut(s)	240, 607, 844, 1003, 1351, 2092, 2209, 2252
Hpy166II	GTNNAC	6 cut(s)	481, 685, 769, 1501, 1832, 2485
Hpy188I	TCNGA	7 cut(s)	123, 325, 421, 1449, 1536, 1952, 1983
Hpy188III	TCNNGA	5 cut(s)	392, 1310, 1730, 1758, 2192
Hpy8I	GTNNAC	6 cut(s)	481, 685, 769, 1501, 1832, 2485
Hpy99I	CGWCG	2 cut(s)	146, 653
HpyCH4III	ACNGT	4 cut(s)	838, 1252, 1879, 1990
HpyCH4IV	ACGT	3 cut(s)	1256, 2099, 2481
HpyF10VI	GCNNNNNNNGC	8 cut(s)	282, 383, 403, 436, 917, 1920, 2354, 2363
HpyF3I	CTNAG	3 cut(s)	110, 1965, 2123
HpySE526I	ACGT	3 cut(s)	1256, 2099, 2481
HspAI	GCGC	4 cut(s)	285, 470, 935, 1545
Ksp22I	TGATCA	1 cut(s)	1531
KspAI	GTTAAC	1 cut(s)	2485
Kzo9I	GATC	3 cut(s)	1531, 1584, 2164
LmnI	GCTCC	5 cut(s)	171, 292, 359, 394, 1246
Lsp1109I	GCAGC	3 cut(s)	500, 907, 1066
LweI	GCATC	5 cut(s)	622, 1066, 1422, 1552, 1609
MaeI	CTAG	1 cut(s)	1601
MaeII	ACGT	3 cut(s)	1256, 2099, 2481
MaeIII	GTNAC	6 cut(s)	832, 1252, 1357, 1777, 1882, 2332
MalI	GATC	3 cut(s)	1533, 1586, 2166
MboI	GATC	3 cut(s)	1531, 1584, 2164
MfeI	CAATTG	1 cut(s)	1261
MhlI	GDGCHC	5 cut(s)	168, 399, 648, 1243, 1834
MluCI	AATT	9 cut(s)	305, 762, 782, 827, 1261, 2011, 2134, 2156, 2211
MlyI	GAGTC	2 cut(s)	756, 1395
MmeI	TCCRAC	4 cut(s)	193, 202, 255, 313
MslI	CAYNNNNRTG	1 cut(s)	896
MspA1I	CMGCKG	4 cut(s)	2366, 2396, 2426, 2456
MspCI	CTTAAG	1 cut(s)	1804
MspI	CCGG	5 cut(s)	679, 696, 1136, 1605, 2279
MspR9I	CCNGG	5 cut(s)	351, 383, 509, 680, 697
MunI	CAATTG	1 cut(s)	1261
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	3 cut(s)	351, 383, 509
MwoI	GCNNNNNNNGC	8 cut(s)	282, 383, 403, 436, 917, 1920, 2354, 2363
NciI	CCSGG	2 cut(s)	680, 697
NcoI	CCATGG	1 cut(s)	1662
NdeII	GATC	3 cut(s)	1531, 1584, 2164
NlaIV	GGNNCC	3 cut(s)	355, 506, 2420
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	5 cut(s)	832, 1357, 1777, 1882, 2332
PagI	TCATGA	1 cut(s)	1729
PasI	CCCWGGG	1 cut(s)	508
PceI	AGGCCT	2 cut(s)	2121, 2183
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	4 cut(s)	560, 1726, 1900, 1944
PkrI	GCNGC	7 cut(s)	278, 487, 490, 922, 1081, 2305, 2455
PleI	GAGTC	2 cut(s)	755, 1395
PpsI	GAGTC	2 cut(s)	755, 1395
Ppu21I	YACGTR	1 cut(s)	1257
PshBI	ATTAAT	1 cut(s)	1692
PsiI	TTATAA	2 cut(s)	1028, 1046
Psp124BI	GAGCTC	1 cut(s)	399
Psp1406I	AACGTT	2 cut(s)	2099, 2481
Psp6I	CCWGG	3 cut(s)	349, 381, 507
PspEI	GGTNACC	1 cut(s)	1357
PspFI	CCCAGC	2 cut(s)	1652, 1814
PspGI	CCWGG	3 cut(s)	349, 381, 507
PspN4I	GGNNCC	3 cut(s)	355, 506, 2420
PspPI	GGNCC	2 cut(s)	335, 504
RsaI	GTAC	3 cut(s)	1259, 1842, 1894
RsaNI	GTAC	3 cut(s)	1258, 1841, 1893
RseI	CAYNNNNRTG	1 cut(s)	896
SacI	GAGCTC	1 cut(s)	399
SatI	GCNGC	7 cut(s)	277, 486, 489, 921, 1080, 2304, 2454
Sau3AI	GATC	3 cut(s)	1531, 1584, 2164
Sau96I	GGNCC	2 cut(s)	335, 504
ScaI	AGTACT	1 cut(s)	1842
SchI	GAGTC	2 cut(s)	756, 1395
ScrFI	CCNGG	5 cut(s)	351, 383, 509, 680, 697
SduI	GDGCHC	5 cut(s)	168, 399, 648, 1243, 1834
SfaNI	GCATC	5 cut(s)	622, 1066, 1422, 1552, 1609
SfcI	CTRYAG	1 cut(s)	912
SinI	GGWCC	2 cut(s)	335, 504
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	2 cut(s)	1415, 1804
SmoI	CTYRAG	2 cut(s)	1415, 1804
SnaBI	TACGTA	1 cut(s)	1257
Sse9I	AATT	9 cut(s)	305, 762, 782, 827, 1261, 2011, 2134, 2156, 2211
SseBI	AGGCCT	2 cut(s)	2121, 2183
SspI	AATATT	1 cut(s)	1507
SspMI	CTAG	1 cut(s)	1601
SstI	GAGCTC	1 cut(s)	399
StuI	AGGCCT	2 cut(s)	2121, 2183
StyD4I	CCNGG	5 cut(s)	349, 381, 507, 678, 695
StyI	CCWWGG	2 cut(s)	1083, 1662
TaaI	ACNGT	4 cut(s)	838, 1252, 1879, 1990
TaiI	ACGT	3 cut(s)	1259, 2102, 2484
TaqI	TCGA	5 cut(s)	312, 558, 648, 779, 2167
TaqII	GACCGA	1 cut(s)	492
TasI	AATT	9 cut(s)	305, 762, 782, 827, 1261, 2011, 2134, 2156, 2211
TatI	WGTACW	1 cut(s)	1840
TauI	GCSGC	4 cut(s)	279, 488, 2306, 2456
TfiI	GAWTC	4 cut(s)	560, 1726, 1900, 1944
TscAI	CASTG	6 cut(s)	642, 757, 1414, 1583, 1882, 2341
TseFI	GTSAC	5 cut(s)	832, 1357, 1777, 1882, 2332
TseI	GCWGC	3 cut(s)	488, 920, 1079
Tsp45I	GTSAC	5 cut(s)	832, 1357, 1777, 1882, 2332
TspDTI	ATGAA	9 cut(s)	17, 70, 142, 567, 1235, 1343, 1718, 1892, 2081
TspGWI	ACGGA	3 cut(s)	247, 279, 2263
TspRI	CASTG	6 cut(s)	642, 757, 1414, 1583, 1882, 2341
Vha464I	CTTAAG	1 cut(s)	1804
VneI	GTGCAC	1 cut(s)	1830
VpaK11BI	GGWCC	2 cut(s)	335, 504
VspI	ATTAAT	1 cut(s)	1692
XapI	RAATTY	4 cut(s)	305, 782, 2011, 2211
XspI	CTAG	1 cut(s)	1601
ZrmI	AGTACT	1 cut(s)	1842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.