Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Forward (+)

14517531 .. 14520408

Gene Structure 2878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGACGCTTTCGTGTTTGATGAATCGGAGAACAGCGGAGCTGGAGCTGGAGGAACTAAAACTAAAAAGGAGAAGAAGGCAAAGGGATGTTTAGTTGGAAGTGCAAGGAAGACGCTTGGTGATATAAGTAACATTCAGCAGCGGCCAAATAAGCAAGCTATCCAGCATGTGAACCAGCAATTCGATTCACTTACTACGAAGAAGTATGTTGAGAATCTAACCAAGGAAAATGTGGCACTGATGAAACTTCTTTCAGACAGAAATAAAGTCATTGAATTGAGCAGAACAGAGTTAGAGAACTTGAGAGCCCATCTTGAGAAAGTACAGCAACAGAATTCTCAACTTGCCCATGCAAACAGCCAGATGTTGGCGGAAGTCACTTCAAGTCGAGATAGGCTAAGGATACTTCAACATGCACTTGGATGCCAAAATGCCTTGCTCAAAGTGAGGAAAGTGGAGGAAAAGGAGAACGCCAAAGAAGTAGGAAATCAGAATACGACAAATGAGAAGGTACGTTCAGCTAAGTGTGTTGAGCCAGGGGAATCCTCGCAAGCTGTCAAGGAACATTTTAATACGAACAGGAAACGCCAACCACAAAATCTAGCATTGGGCCCTCCTATTGTTGAAGTAGTCCAAAACAATGAGAAGCCTGACAACAAAAGACGCTTGAGAAGGCAATCTGCAATCTTTGAAACCGAAGCCCAGGAAACAACTGAAGACTCGTTTGAGATTAAAGATGACAATAAACGACGGTTGAGAAGGCAATTGGCAAGTGCTAAATCTGAAGAACTACAAGCAACTGAAGACCTGTCTGAGAGAAAAATGAGAACAGAAGGTTTTTTACTGTGTTTAATTGCTCTCTGCAAGTACATGTTTTCAGTGAGTTTTCACTTTATTTACATGTCCTTTGTGGTTTCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

307

Amino Acids

34.92

Weight (kDa)

9.24

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	367
AciI	CCGC	3 cut(s)	36, 142, 371
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	3 cut(s)	735, 804, 822
AfaI	GTAC	3 cut(s)	324, 513, 869
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflIII	ACRYGT	2 cut(s)	870, 900
AgsI	TTSAA	5 cut(s)	275, 384, 410, 626, 692
AjnI	CCWGG	2 cut(s)	535, 702
AluBI	AGCT	5 cut(s)	41, 47, 158, 521, 554
AluI	AGCT	5 cut(s)	41, 47, 158, 521, 554
AoxI	GGCC	2 cut(s)	143, 610
ApaI	GGGCCC	1 cut(s)	614
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	610, 611
AsuHPI	GGTGA	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	614
BanII	GRGCYC	2 cut(s)	310, 614
BarI	GAAGNNNNNNTAC	2 cut(s)	825, 857
BbsI	GAAGAC	3 cut(s)	116, 723, 810
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	318
BciT130I	CCWGG	2 cut(s)	537, 704
BciVI	GTATCC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	140, 143
BlsI	GCNGC	2 cut(s)	141, 144
Bme1390I	CCNGG	2 cut(s)	537, 704
BmgT120I	GGNCC	2 cut(s)	610, 611
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	2 cut(s)	537, 704
BmsI	GCATC	1 cut(s)	413
BpiI	GAAGAC	3 cut(s)	116, 723, 810
BpmI	CTGGAG	2 cut(s)	63, 69
Bpu10I	CCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	3 cut(s)	322, 335, 688
BsaJI	CCNNGG	3 cut(s)	222, 536, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	537, 704
BseDI	CCNNGG	3 cut(s)	222, 536, 702
BseGI	GGATG	2 cut(s)	92, 428
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	804
BseSI	GKGCMC	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	2 cut(s)	145, 612
BslI	CCNNNNNNNGG	1 cut(s)	367
BsnI	GGCC	2 cut(s)	145, 612
Bsp120I	GGGCCC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	310, 614
BspACI	CCGC	3 cut(s)	36, 142, 371
BspANI	GGCC	2 cut(s)	145, 612
BspCNI	CTCAG	1 cut(s)	805
BspLI	GGNNCC	1 cut(s)	612
BssECI	CCNNGG	3 cut(s)	222, 536, 702
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	537, 704
Bst4CI	ACNGT	2 cut(s)	753, 846
BstC8I	GCNNGC	2 cut(s)	156, 552
BstDEI	CTNAG	3 cut(s)	398, 522, 813
BstF5I	GGATG	2 cut(s)	92, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	2 cut(s)	537, 704
BstNSI	RCATGY	4 cut(s)	170, 416, 874, 904
BstSCI	CCNGG	2 cut(s)	535, 702
BstSLI	GKGCMC	1 cut(s)	614
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	3 cut(s)	116, 723, 810
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	145, 612
BtsCI	GGATG	2 cut(s)	92, 428
BtsIMutI	CAGTG	2 cut(s)	236, 885
Cac8I	GCNNGC	2 cut(s)	156, 552
Cfr13I	GGNCC	2 cut(s)	610, 611
CseI	GACGC	3 cut(s)	14, 121, 672
Csp6I	GTAC	3 cut(s)	323, 512, 868
CviAII	CATG	5 cut(s)	167, 350, 413, 871, 901
CviQI	GTAC	3 cut(s)	323, 512, 868
DdeI	CTNAG	3 cut(s)	398, 522, 813
EaeI	YGGCCR	1 cut(s)	143
EciI	GGCGGA	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	2 cut(s)	310, 614
Eco57I	CTGAAG	3 cut(s)	735, 804, 822
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	535, 702
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	310, 614
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	5 cut(s)	170, 353, 416, 874, 904
FaiI	YATR	7 cut(s)	125, 168, 207, 351, 414, 872, 902
FatI	CATG	5 cut(s)	166, 349, 412, 870, 900
Fnu4HI	GCNGC	2 cut(s)	140, 143
FokI	GGATG	2 cut(s)	99, 435
FriOI	GRGCYC	2 cut(s)	310, 614
Fsp4HI	GCNGC	2 cut(s)	140, 143
FspBI	CTAG	1 cut(s)	602
GluI	GCNGC	2 cut(s)	140, 143
GsuI	CTGGAG	2 cut(s)	63, 69
HaeIII	GGCC	2 cut(s)	145, 612
HgaI	GACGC	3 cut(s)	14, 121, 672
Hin1II	CATG	5 cut(s)	170, 353, 416, 874, 904
HinfI	GANTC	5 cut(s)	23, 185, 214, 542, 719
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	6 cut(s)	28, 256, 492, 784, 814, 919
Hpy188III	TCNNGA	2 cut(s)	314, 389
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	753
HpyAV	CCTTC	5 cut(s)	70, 502, 666, 753, 827
HpyCH4III	ACNGT	2 cut(s)	753, 846
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	5 cut(s)	104, 353, 416, 683, 864
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	398, 522, 813
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	5 cut(s)	170, 353, 416, 874, 904
LmnI	GCTCC	2 cut(s)	38, 44
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	128, 376
MboII	GAAGA	6 cut(s)	85, 121, 211, 728, 797, 815
MfeI	CAATTG	1 cut(s)	764
MhlI	GDGCHC	2 cut(s)	310, 614
MluCI	AATT	5 cut(s)	179, 275, 334, 764, 852
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	44, 441, 451, 556, 624
MseI	TTAA	3 cut(s)	570, 732, 851
MslI	CAYNNNNRTG	1 cut(s)	421
MspA1I	CMGCKG	2 cut(s)	36, 142
MspR9I	CCNGG	2 cut(s)	537, 704
MunI	CAATTG	1 cut(s)	764
MvaI	CCWGG	2 cut(s)	537, 704
MwoI	GCNNNNNNNGC	1 cut(s)	151
NlaIII	CATG	5 cut(s)	170, 353, 416, 874, 904
NlaIV	GGNNCC	1 cut(s)	612
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	4 cut(s)	170, 416, 874, 904
PciI	ACATGT	2 cut(s)	870, 900
PfeI	GAWTC	4 cut(s)	23, 185, 214, 542
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	141, 144
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
PscI	ACATGT	2 cut(s)	870, 900
Psp6I	CCWGG	2 cut(s)	535, 702
PspGI	CCWGG	2 cut(s)	535, 702
PspN4I	GGNNCC	1 cut(s)	612
PspOMI	GGGCCC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	610, 611
RsaI	GTAC	3 cut(s)	324, 513, 869
RsaNI	GTAC	3 cut(s)	323, 512, 868
RseI	CAYNNNNRTG	1 cut(s)	421
SaqAI	TTAA	3 cut(s)	570, 732, 851
SatI	GCNGC	2 cut(s)	140, 143
Sau96I	GGNCC	2 cut(s)	610, 611
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	2 cut(s)	537, 704
SduI	GDGCHC	2 cut(s)	310, 614
SetI	ASST	9 cut(s)	43, 49, 160, 513, 517, 523, 556, 810, 838
SfaNI	GCATC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	421
SmlI	CTYRAG	3 cut(s)	301, 314, 667
SmoI	CTYRAG	3 cut(s)	301, 314, 667
Sse9I	AATT	5 cut(s)	179, 275, 334, 764, 852
SsiI	CCGC	3 cut(s)	36, 142, 371
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	2 cut(s)	535, 702
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	753, 846
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	2 cut(s)	183, 388
TasI	AATT	5 cut(s)	179, 275, 334, 764, 852
TatI	WGTACW	2 cut(s)	322, 867
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	4 cut(s)	23, 185, 214, 542
Tru1I	TTAA	3 cut(s)	570, 732, 851
Tru9I	TTAA	3 cut(s)	570, 732, 851
TscAI	CASTG	2 cut(s)	243, 885
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	36, 257
TspRI	CASTG	2 cut(s)	243, 885
Van91I	CCANNNNNTGG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	4 cut(s)	170, 416, 874, 904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.