Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

24186279 .. 24189026

Gene Structure 2748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1167400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGCCAGATAACAAGGCAAAAGGTGAGAAAATTGCTAAGGGGTTGTCGATTGGAAGTAACTCACGGAAGAGGCTTGCTGATATTAGCAACTTGCAGCAGCAGCGACCGAAACCATCGATTCAACAGGTGAAGCAGCAATTTGATTCAGATACAAATAAAGAGTATATTGACAATCTTCAGAAGGAAAACAGGACATTGATGAAACTTCTTACTGACAGAAACAAAATCATAGAATTGAGCAGAGTAGAGATACAGAACTTGAGAATCAATCTGCAGAAAGTACAACAACAGAATTTACAACTCGCCCAAGCAAATAGCCAGATCTTAGGGGAACTCAATTTAGGTAAAGATAGGCTAAAGGCACTTCAACATGAAATTGGGTGCAAAAATGGTTTGCTCAAAGTGAGAAAACTGGAGGCTGAGGAGAAACCCAAAAGAGTAACGTGCCAAAGTACAGAAAATCAGGTAGAAGGTTTAACTAAGTGTTTTGAAGCGGGGGAGTCCTTGCAAGCAGACAAGAAGGATGGTCCTTGTAATACCCAAAGGGATCGACATCTAAAAAATCCACTTGTGGCTTCTCATACTGTTGAAGCAGTCGAAGTTAAAGAGAAGGCTGATAATAAAAGAGGCTTGAGAAGACAGTCTGCAAGGTTTAAAACTGAAGAACGCGAAGCAACGGAAGAAATGCTGGAGACCAATGGTTGCAAAATTCCCGTCCTTCCTCTTTGCAATAATATGGTTCATGAAAGTGAGACGACATTTTCATCAGTGGAAAAAGAGGCTCCTACTATTGAAGCAGTCCAAGCTAACAAGAAGGCTTACCACAAAAGGCGTTTTACAAGGCAGTCTGCAAAGTTAAAAACTGAAGAACAGGAAGCCACTGAAGAAATGTTTGAGACCAATGGTGACAAAATTCCTCTCTCTCTTCTACGTGACAACGTGGTTCATGCAAGTGAGACGATATGTCCATTAGGGGGAAAAGACGATACTACAAGTGCAGCAGTCCAAGCTAAAGAGAAGGCTTACAACAATAGGCGTTTTACAAGGCAGTCTGCAAAGTTAAAAACCGAAGTACAGGAAGCACCTGAAGGGTTTGGGACCAATGGTGAAAAGTTTCACGTCTCTCATCTATGTCATAATGTGGTTCATGGAAGTGCTCCGACATGCTCAGTGTTGGAAACAGAGGATCCTATTACTGAAGCAGTCCAAGCCAAAGAGAAGGCTGACAACAAAAGGCAATCTGCAAGGTTTAAAACTGAAGAATTGTTTGAGACCAACGAAGACACGGTCCATGTCTATCCTCTAAGTGACGATGTGGTTCATGAAAGTGGTTCAACATGTTCTTCGGTGAAAAAGGAGGATGAAGGATACACTGCCCCGAGATCTGAAGGCCAGGAATGTCGAAGATCATCTGCAAGGCCACTGCGGCGGCGAGCAACTCAGGCGATTAAGTCATACAAGGAAACTCCAGTTAATGTGAAGATGCGCAGAGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

500

Amino Acids

56.4

Weight (kDa)

8.83

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1487
AccII	CGCG	1 cut(s)	669
AciI	CCGC	3 cut(s)	494, 1426, 1429
AclWI	GGATC	3 cut(s)	555, 1181, 1194
AcsI	RAATTY	3 cut(s)	292, 708, 912
AcuI	CTGAAG	8 cut(s)	161, 681, 885, 903, 1107, 1218, 1278, 1407
AfaI	GTAC	3 cut(s)	282, 454, 1074
AfiI	CCNNNNNNNGG	1 cut(s)	974
AflIII	ACRYGT	1 cut(s)	1337
AgsI	TTSAA	6 cut(s)	122, 368, 491, 590, 794, 1335
AhdI	GACNNNNNGTC	1 cut(s)	963
AjiI	CACGTC	1 cut(s)	1120
AjnI	CCWGG	1 cut(s)	1392
AluBI	AGCT	2 cut(s)	806, 1010
AluI	AGCT	2 cut(s)	806, 1010
Alw21I	GWGCWC	1 cut(s)	1159
Alw26I	GTCTC	6 cut(s)	686, 746, 890, 950, 1126, 1265
AlwI	GGATC	3 cut(s)	555, 1181, 1194
Ama87I	CYCGRG	1 cut(s)	1378
AoxI	GGCC	2 cut(s)	1390, 1418
ApeKI	GCWGC	5 cut(s)	94, 97, 100, 133, 998
ApoI	RAATTY	3 cut(s)	292, 708, 912
ArsI	GACNNNNNNTTYG	4 cut(s)	699, 731, 1272, 1304
Asp700I	GAANNNNTTC	1 cut(s)	1113
AspLEI	GCGC	1 cut(s)	1488
AspS9I	GGNCC	3 cut(s)	527, 1098, 1288
AsuHPI	GGTGA	5 cut(s)	35, 139, 917, 1118, 1360
AvaI	CYCGRG	1 cut(s)	1378
AvaII	GGWCC	3 cut(s)	527, 1098, 1288
BamHI	GGATCC	1 cut(s)	1186
BbsI	GAAGAC	2 cut(s)	643, 1287
Bbv12I	GWGCWC	1 cut(s)	1159
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	5 cut(s)	106, 109, 112, 145, 1010
BccI	CCATC	2 cut(s)	121, 518
BciT130I	CCWGG	1 cut(s)	1394
BciVI	GTATCC	1 cut(s)	1361
BcoDI	GTCTC	6 cut(s)	686, 746, 890, 950, 1126, 1265
BfmI	CTRYAG	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	1361
BglI	GCCNNNNNGGC	1 cut(s)	1426
BglII	AGATCT	2 cut(s)	321, 1382
BisI	GCNGC	7 cut(s)	95, 98, 101, 134, 999, 1427, 1430
BlsI	GCNGC	7 cut(s)	96, 99, 102, 135, 1000, 1428, 1431
Bme1390I	CCNGG	1 cut(s)	1394
Bme18I	GGWCC	3 cut(s)	527, 1098, 1288
BmeRI	GACNNNNNGTC	1 cut(s)	963
BmeT110I	CYCGRG	1 cut(s)	1378
BmgBI	CACGTC	1 cut(s)	1120
BmgT120I	GGNCC	3 cut(s)	527, 1098, 1288
BmiI	GGNNCC	3 cut(s)	783, 1099, 1188
BmrFI	CCNGG	1 cut(s)	1394
BmsI	GCATC	1 cut(s)	1473
BpiI	GAAGAC	2 cut(s)	643, 1287
BpmI	CTGGAG	3 cut(s)	434, 710, 1452
Bpu10I	CCTNAGC	2 cut(s)	36, 420
BpuEI	CTTGAG	2 cut(s)	280, 652
Bsa29I	ATCGAT	1 cut(s)	116
BsaAI	YACGTR	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	552
BsaI	GGTCTC	3 cut(s)	686, 890, 1265
Bsc4I	CCNNNNNNNGG	1 cut(s)	974
Bse1I	ACTGG	2 cut(s)	417, 1469
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	1394
BseCI	ATCGAT	1 cut(s)	116
BseGI	GGATG	2 cut(s)	529, 1366
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	974
BseMII	CTCAG	3 cut(s)	411, 1182, 1454
BseNI	ACTGG	2 cut(s)	417, 1469
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	5 cut(s)	106, 109, 112, 145, 1010
BsgI	GTGCAG	1 cut(s)	1017
Bsh1236I	CGCG	1 cut(s)	669
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	1392, 1420
BshVI	ATCGAT	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	1159
BsiHKCI	CYCGRG	1 cut(s)	1378
BslFI	GGGAC	1 cut(s)	1111
BslI	CCNNNNNNNGG	1 cut(s)	974
BsmAI	GTCTC	6 cut(s)	686, 746, 890, 950, 1126, 1265
BsmBI	CGTCTC	3 cut(s)	746, 950, 1126
BsmFI	GGGAC	1 cut(s)	1111
BsnI	GGCC	2 cut(s)	1392, 1420
Bso31I	GGTCTC	3 cut(s)	686, 890, 1265
BsoBI	CYCGRG	1 cut(s)	1378
Bsp1286I	GDGCHC	1 cut(s)	1159
Bsp143I	GATC	5 cut(s)	321, 547, 1186, 1382, 1406
BspACI	CCGC	3 cut(s)	494, 1426, 1429
BspANI	GGCC	2 cut(s)	1392, 1420
BspCNI	CTCAG	3 cut(s)	412, 1181, 1453
BspDI	ATCGAT	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	669
BspHI	TCATGA	2 cut(s)	742, 1321
BspLI	GGNNCC	3 cut(s)	783, 1099, 1188
BspMAI	CTGCAG	1 cut(s)	276
BspPI	GGATC	3 cut(s)	555, 1181, 1194
BspTNI	GGTCTC	3 cut(s)	686, 890, 1265
BsrI	ACTGG	2 cut(s)	417, 1469
BssMI	GATC	5 cut(s)	321, 547, 1186, 1382, 1406
Bst2UI	CCWGG	1 cut(s)	1394
Bst4CI	ACNGT	3 cut(s)	586, 642, 1288
Bst6I	CTCTTC	2 cut(s)	62, 930
BstBAI	YACGTR	1 cut(s)	932
BstC8I	GCNNGC	3 cut(s)	75, 510, 1434
BstDEI	CTNAG	7 cut(s)	36, 325, 420, 480, 1168, 1304, 1440
BstF5I	GGATG	2 cut(s)	529, 1366
BstFNI	CGCG	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	1488
BstKTI	GATC	5 cut(s)	324, 550, 1189, 1385, 1409
BstMAI	GTCTC	6 cut(s)	686, 746, 890, 950, 1126, 1265
BstMBI	GATC	5 cut(s)	321, 547, 1186, 1382, 1406
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	6 cut(s)	100, 803, 1007, 1208, 1426, 1442
BstNI	CCWGG	1 cut(s)	1394
BstNSI	RCATGY	2 cut(s)	1167, 1341
BstSCI	CCNGG	1 cut(s)	1392
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	5 cut(s)	106, 109, 112, 145, 1010
BstV2I	GAAGAC	2 cut(s)	643, 1287
BstX2I	RGATCY	3 cut(s)	321, 1186, 1382
BstYI	RGATCY	3 cut(s)	321, 1186, 1382
Bsu15I	ATCGAT	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	1361
BsuRI	GGCC	2 cut(s)	1392, 1420
BsuTUI	ATCGAT	1 cut(s)	116
BtrI	CACGTC	1 cut(s)	1120
BtsCI	GGATG	2 cut(s)	529, 1366
BtsI	GCAGTG	2 cut(s)	1371, 1421
BtsIMutI	CAGTG	5 cut(s)	774, 879, 1176, 1371, 1421
Cac8I	GCNNGC	3 cut(s)	75, 510, 1434
CciI	TCATGA	2 cut(s)	742, 1321
CfoI	GCGC	1 cut(s)	1488
Cfr13I	GGNCC	3 cut(s)	527, 1098, 1288
ClaI	ATCGAT	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	281, 453, 1073
CviAII	CATG	8 cut(s)	371, 743, 947, 1148, 1164, 1292, 1322, 1338
CviQI	GTAC	3 cut(s)	281, 453, 1073
DdeI	CTNAG	7 cut(s)	36, 325, 420, 480, 1168, 1304, 1440
DpnI	GATC	5 cut(s)	323, 549, 1188, 1384, 1408
DpnII	GATC	5 cut(s)	321, 547, 1186, 1382, 1406
DraI	TTTAAA	2 cut(s)	655, 1252
DriI	GACNNNNNGTC	1 cut(s)	963
Eam1104I	CTCTTC	2 cut(s)	62, 930
Eam1105I	GACNNNNNGTC	1 cut(s)	963
EarI	CTCTTC	2 cut(s)	62, 930
Eco31I	GGTCTC	3 cut(s)	686, 890, 1265
Eco47I	GGWCC	3 cut(s)	527, 1098, 1288
Eco57I	CTGAAG	8 cut(s)	161, 681, 885, 903, 1107, 1218, 1278, 1407
Eco88I	CYCGRG	1 cut(s)	1378
EcoRII	CCWGG	1 cut(s)	1392
Esp3I	CGTCTC	3 cut(s)	746, 950, 1126
FaeI	CATG	8 cut(s)	374, 746, 950, 1151, 1167, 1295, 1325, 1341
FaqI	GGGAC	1 cut(s)	1111
FatI	CATG	8 cut(s)	370, 742, 946, 1147, 1163, 1291, 1321, 1337
FauI	CCCGC	1 cut(s)	487
Fnu4HI	GCNGC	7 cut(s)	95, 98, 101, 134, 999, 1427, 1430
FokI	GGATG	2 cut(s)	536, 1373
Fsp4HI	GCNGC	7 cut(s)	95, 98, 101, 134, 999, 1427, 1430
FspI	TGCGCA	1 cut(s)	1487
GlaI	GCGC	1 cut(s)	1487
GluI	GCNGC	7 cut(s)	95, 98, 101, 134, 999, 1427, 1430
GsuI	CTGGAG	3 cut(s)	434, 710, 1452
HaeIII	GGCC	2 cut(s)	1392, 1420
HhaI	GCGC	1 cut(s)	1488
Hin1II	CATG	8 cut(s)	374, 746, 950, 1151, 1167, 1295, 1325, 1341
Hin6I	GCGC	1 cut(s)	1486
HinP1I	GCGC	1 cut(s)	1486
HinfI	GANTC	4 cut(s)	118, 143, 264, 500
HphI	GGTGA	5 cut(s)	35, 139, 917, 1118, 1360
Hpy188I	TCNGA	4 cut(s)	148, 180, 1161, 1387
Hpy188III	TCNNGA	2 cut(s)	743, 1322
HpyCH4III	ACNGT	3 cut(s)	586, 642, 1288
HpyCH4IV	ACGT	4 cut(s)	443, 931, 939, 1119
HpyF10VI	GCNNNNNNNGC	6 cut(s)	100, 803, 1007, 1208, 1426, 1442
HpyF3I	CTNAG	7 cut(s)	36, 325, 420, 480, 1168, 1304, 1440
HpySE526I	ACGT	4 cut(s)	443, 931, 939, 1119
Hsp92II	CATG	8 cut(s)	374, 746, 950, 1151, 1167, 1295, 1325, 1341
HspAI	GCGC	1 cut(s)	1486
Kzo9I	GATC	5 cut(s)	321, 547, 1186, 1382, 1406
LmnI	GCTCC	2 cut(s)	787, 1162
Lsp1109I	GCAGC	5 cut(s)	106, 109, 112, 145, 1010
LweI	GCATC	1 cut(s)	1473
MaeII	ACGT	4 cut(s)	443, 931, 939, 1119
MaeIII	GTNAC	5 cut(s)	56, 439, 905, 932, 1307
MalI	GATC	5 cut(s)	323, 549, 1188, 1384, 1408
MboI	GATC	5 cut(s)	321, 547, 1186, 1382, 1406
MflI	RGATCY	3 cut(s)	321, 1186, 1382
MhlI	GDGCHC	1 cut(s)	1159
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	1155, 1184
MroXI	GAANNNNTTC	1 cut(s)	1113
MseI	TTAA	8 cut(s)	476, 603, 654, 857, 1061, 1251, 1449, 1473
MslI	CAYNNNNRTG	4 cut(s)	747, 951, 1152, 1326
MspR9I	CCNGG	1 cut(s)	1394
MvaI	CCWGG	1 cut(s)	1394
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	6 cut(s)	100, 803, 1007, 1208, 1426, 1442
NdeII	GATC	5 cut(s)	321, 547, 1186, 1382, 1406
NlaIII	CATG	8 cut(s)	374, 746, 950, 1151, 1167, 1295, 1325, 1341
NlaIV	GGNNCC	3 cut(s)	783, 1099, 1188
NmuCI	GTSAC	3 cut(s)	905, 932, 1307
NsbI	TGCGCA	1 cut(s)	1487
NspI	RCATGY	2 cut(s)	1167, 1341
PagI	TCATGA	2 cut(s)	742, 1321
PciI	ACATGT	1 cut(s)	1337
PdmI	GAANNNNTTC	1 cut(s)	1113
PfeI	GAWTC	3 cut(s)	118, 143, 264
PflFI	GACNNNGTC	1 cut(s)	1286
PkrI	GCNGC	7 cut(s)	96, 99, 102, 135, 1000, 1428, 1431
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Ppu21I	YACGTR	1 cut(s)	932
PscI	ACATGT	1 cut(s)	1337
Psp6I	CCWGG	1 cut(s)	1392
PspGI	CCWGG	1 cut(s)	1392
PspN4I	GGNNCC	3 cut(s)	783, 1099, 1188
PspPI	GGNCC	3 cut(s)	527, 1098, 1288
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	3 cut(s)	321, 1186, 1382
PsyI	GACNNNGTC	1 cut(s)	1286
RsaI	GTAC	3 cut(s)	282, 454, 1074
RsaNI	GTAC	3 cut(s)	281, 453, 1073
RseI	CAYNNNNRTG	4 cut(s)	747, 951, 1152, 1326
SaqAI	TTAA	8 cut(s)	476, 603, 654, 857, 1061, 1251, 1449, 1473
SatI	GCNGC	7 cut(s)	95, 98, 101, 134, 999, 1427, 1430
Sau3AI	GATC	5 cut(s)	321, 547, 1186, 1382, 1406
Sau96I	GGNCC	3 cut(s)	527, 1098, 1288
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	1394
SduI	GDGCHC	1 cut(s)	1159
SfaNI	GCATC	1 cut(s)	1473
SfcI	CTRYAG	1 cut(s)	272
SinI	GGWCC	3 cut(s)	527, 1098, 1288
SmiMI	CAYNNNNRTG	4 cut(s)	747, 951, 1152, 1326
SmlI	CTYRAG	2 cut(s)	259, 631
SmoI	CTYRAG	2 cut(s)	259, 631
SsiI	CCGC	3 cut(s)	494, 1426, 1429
StyD4I	CCNGG	1 cut(s)	1392
TaaI	ACNGT	3 cut(s)	586, 642, 1288
TaiI	ACGT	4 cut(s)	446, 934, 942, 1122
TaqI	TCGA	5 cut(s)	47, 116, 550, 597, 1402
TaqII	GACCGA	1 cut(s)	121
TatI	WGTACW	3 cut(s)	280, 452, 1072
TauI	GCSGC	2 cut(s)	1429, 1432
TfiI	GAWTC	3 cut(s)	118, 143, 264
Tru1I	TTAA	8 cut(s)	476, 603, 654, 857, 1061, 1251, 1449, 1473
Tru9I	TTAA	8 cut(s)	476, 603, 654, 857, 1061, 1251, 1449, 1473
TscAI	CASTG	5 cut(s)	774, 886, 1176, 1378, 1428
TseFI	GTSAC	3 cut(s)	905, 932, 1307
TseI	GCWGC	5 cut(s)	94, 97, 100, 133, 998
Tsp45I	GTSAC	3 cut(s)	905, 932, 1307
TspGWI	ACGGA	2 cut(s)	79, 692
TspRI	CASTG	5 cut(s)	774, 886, 1176, 1378, 1428
Tth111I	GACNNNGTC	1 cut(s)	1286
VpaK11BI	GGWCC	3 cut(s)	527, 1098, 1288
XapI	RAATTY	3 cut(s)	292, 708, 912
XceI	RCATGY	2 cut(s)	1167, 1341
XmnI	GAANNNNTTC	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.