Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

55728635 .. 55731520

Gene Structure 2886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG286000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAACTTCTTTCAGACAGAAATAAAGTCATTGAATTGAGCAGAACAGAGTTAGAGAACTTGAGAGCCCATCTTGAGAAAGTACAGCAACAGAATTCTCAACTTGCCCATGCAAACAGCCAGATGTTGGCGGAAGTCACTTCAAGTCGAGATAGGCTAAGGATACTTCAACATGCACTTGGATGCCAAAATGCCTTACTCAAAGTTAGGAAAGTGGAGGAAAAGGAGAACACCAAACGAGTAAGAAATCAAAATACGACAAATGAGAAGGTACGGTCAGCTCAGTGTGTTGAGCCAGGGGAATCCTCACAAGCTGTCAAGGAACATTTTAATACGAACAGGAAACGCCAACCACAAAATCTAGCATTGGGCCCTCCTATTGTTGAAGTCGTCCAAAACAACGAGAAGGTTGACAACAAAAGACGCTTGAGAAGGCAATCTGCAATCTTTGAAACCGAAGACCAGGAAACAACTGAAGACTCGTTTGAGATTAAAGATGACAATAAAAGACGGTTGAGAAGGCAATTGGCAAGTGCTAAAACTGAAGAACTACAAGCAACTGAAGACTTGTCTGAGAGTAAAAATGAGAACAAAAGAAGTTTGAGAAGGCAATCTGCAAGGTTTAAAACTGAAGAGGCAGAAGTAACTGAAGAAACAAAAGTTACTGAGGACTTATCTGAGATCAATGATGATAATTTTCCTGTTTCTCTTTTGCATAATGATGGGGTTCATGAAAGTGATTCAACATGTCCATTAGTAAAAAACGAGGATGGGGGAAGATCTGAAGAACAAGAATTTCAAAGATCATCTATAAGGCCACTGCGCCGAGCAGCTGAGAAGGTTAAGTCATACAAGGAAATTCCAATTAATGTGAAGATGCGCCAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

296

Amino Acids

34.22

Weight (kDa)

8.34

Isoelectric Point (pI)

77.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	272 - 294	1.3e-08	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	127
AciI	CCGC	1 cut(s)	131
AcsI	RAATTY	3 cut(s)	94, 794, 858
AcuI	CTGAAG	6 cut(s)	495, 564, 582, 651, 669, 804
AfaI	GTAC	2 cut(s)	84, 273
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	746
AgsI	TTSAA	7 cut(s)	35, 144, 170, 386, 452, 744, 800
AjnI	CCWGG	2 cut(s)	295, 462
AluBI	AGCT	3 cut(s)	281, 314, 833
AluI	AGCT	3 cut(s)	281, 314, 833
AoxI	GGCC	2 cut(s)	370, 815
ApaI	GGGCCC	1 cut(s)	374
ApeKI	GCWGC	1 cut(s)	830
ApoI	RAATTY	3 cut(s)	94, 794, 858
AseI	ATTAAT	1 cut(s)	867
AspLEI	GCGC	2 cut(s)	825, 882
AspS9I	GGNCC	2 cut(s)	370, 371
BaeGI	GKGCMC	1 cut(s)	374
BanII	GRGCYC	2 cut(s)	70, 374
BbsI	GAAGAC	3 cut(s)	465, 483, 570
BbvI	GCAGC	1 cut(s)	842
BccI	CCATC	3 cut(s)	78, 716, 764
BciT130I	CCWGG	2 cut(s)	297, 464
BciVI	GTATCC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	362
BfuI	GTATCC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	779
BisI	GCNGC	1 cut(s)	831
BlsI	GCNGC	1 cut(s)	832
Bme1390I	CCNGG	2 cut(s)	297, 464
BmgT120I	GGNCC	2 cut(s)	370, 371
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	297, 464
BmsI	GCATC	2 cut(s)	173, 867
BpiI	GAAGAC	3 cut(s)	465, 483, 570
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	3 cut(s)	82, 95, 448
BsaJI	CCNNGG	2 cut(s)	296, 883
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	297, 464
BseDI	CCNNGG	2 cut(s)	296, 883
BseGI	GGATG	2 cut(s)	188, 775
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	5 cut(s)	296, 564, 657, 669, 825
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	842
BshFI	GGCC	2 cut(s)	372, 817
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	2 cut(s)	372, 817
Bsp120I	GGGCCC	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	70, 374
Bsp143I	GATC	3 cut(s)	681, 779, 803
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	372, 817
BspCNI	CTCAG	5 cut(s)	295, 565, 658, 670, 826
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	296, 883
BssMI	GATC	3 cut(s)	681, 779, 803
BssT1I	CCWWGG	1 cut(s)	883
Bst2UI	CCWGG	2 cut(s)	297, 464
Bst4CI	ACNGT	2 cut(s)	276, 513
Bst6I	CTCTTC	1 cut(s)	627
BstDEI	CTNAG	6 cut(s)	158, 282, 573, 666, 678, 834
BstF5I	GGATG	2 cut(s)	188, 775
BstHHI	GCGC	2 cut(s)	825, 882
BstKTI	GATC	3 cut(s)	684, 782, 806
BstMBI	GATC	3 cut(s)	681, 779, 803
BstNI	CCWGG	2 cut(s)	297, 464
BstNSI	RCATGY	2 cut(s)	176, 750
BstSCI	CCNGG	2 cut(s)	295, 462
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	842
BstV2I	GAAGAC	3 cut(s)	465, 483, 570
BstX2I	RGATCY	1 cut(s)	779
BstYI	RGATCY	1 cut(s)	779
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	372, 817
BtsCI	GGATG	2 cut(s)	188, 775
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	2 cut(s)	290, 818
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	2 cut(s)	825, 882
Cfr13I	GGNCC	2 cut(s)	370, 371
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	83, 272
CviAII	CATG	4 cut(s)	110, 173, 731, 747
CviJI	RGCY	9 cut(s)	68, 120, 157, 281, 295, 314, 372, 817, 833
CviKI_1	RGCY	9 cut(s)	68, 120, 157, 281, 295, 314, 372, 817, 833
CviQI	GTAC	2 cut(s)	83, 272
DdeI	CTNAG	6 cut(s)	158, 282, 573, 666, 678, 834
DpnI	GATC	3 cut(s)	683, 781, 805
DpnII	GATC	3 cut(s)	681, 779, 803
DraI	TTTAAA	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
EciI	GGCGGA	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	883
Eco24I	GRGCYC	2 cut(s)	70, 374
Eco57I	CTGAAG	6 cut(s)	495, 564, 582, 651, 669, 804
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	295, 462
EcoT14I	CCWWGG	1 cut(s)	883
EcoT38I	GRGCYC	2 cut(s)	70, 374
ErhI	CCWWGG	1 cut(s)	883
FaeI	CATG	4 cut(s)	113, 176, 734, 750
FaiI	YATR	7 cut(s)	111, 174, 717, 732, 748, 812, 850
FatI	CATG	4 cut(s)	109, 172, 730, 746
Fnu4HI	GCNGC	1 cut(s)	831
FokI	GGATG	2 cut(s)	195, 782
FriOI	GRGCYC	2 cut(s)	70, 374
Fsp4HI	GCNGC	1 cut(s)	831
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	2 cut(s)	824, 881
GluI	GCNGC	1 cut(s)	831
HaeIII	GGCC	2 cut(s)	372, 817
HgaI	GACGC	1 cut(s)	432
HhaI	GCGC	2 cut(s)	825, 882
Hin1II	CATG	4 cut(s)	113, 176, 734, 750
Hin6I	GCGC	2 cut(s)	823, 880
HinP1I	GCGC	2 cut(s)	823, 880
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	302, 479, 740
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	4 cut(s)	16, 574, 679, 784
Hpy188III	TCNNGA	3 cut(s)	74, 149, 731
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	6 cut(s)	262, 400, 426, 513, 600, 832
HpyCH4III	ACNGT	2 cut(s)	276, 513
HpyCH4V	TGCA	5 cut(s)	113, 176, 443, 617, 715
HpyF3I	CTNAG	6 cut(s)	158, 282, 573, 666, 678, 834
Hsp92II	CATG	4 cut(s)	113, 176, 734, 750
HspAI	GCGC	2 cut(s)	823, 880
Kzo9I	GATC	3 cut(s)	681, 779, 803
LpnPI	CCDG	7 cut(s)	134, 282, 309, 325, 449, 476, 714
Lsp1109I	GCAGC	1 cut(s)	842
LweI	GCATC	2 cut(s)	173, 867
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	3 cut(s)	136, 643, 661
MalI	GATC	3 cut(s)	683, 781, 805
MboI	GATC	3 cut(s)	681, 779, 803
MboII	GAAGA	9 cut(s)	470, 488, 557, 575, 644, 662, 789, 797, 886
MfeI	CAATTG	1 cut(s)	524
MflI	RGATCY	1 cut(s)	779
MhlI	GDGCHC	2 cut(s)	70, 374
MluCI	AATT	7 cut(s)	35, 94, 524, 694, 794, 858, 864
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	6 cut(s)	211, 316, 384, 628, 661, 760
MseI	TTAA	6 cut(s)	330, 492, 624, 843, 867, 889
MslI	CAYNNNNRTG	3 cut(s)	181, 720, 735
MspA1I	CMGCKG	1 cut(s)	833
MspR9I	CCNGG	2 cut(s)	297, 464
MunI	CAATTG	1 cut(s)	524
MvaI	CCWGG	2 cut(s)	297, 464
NdeII	GATC	3 cut(s)	681, 779, 803
NlaIII	CATG	4 cut(s)	113, 176, 734, 750
NlaIV	GGNNCC	1 cut(s)	372
NmeAIII	GCCGAG	1 cut(s)	851
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	2 cut(s)	176, 750
PagI	TCATGA	1 cut(s)	730
PciI	ACATGT	1 cut(s)	746
PfeI	GAWTC	2 cut(s)	302, 740
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	832
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PscI	ACATGT	1 cut(s)	746
PshBI	ATTAAT	1 cut(s)	867
Psp6I	CCWGG	2 cut(s)	295, 462
PspGI	CCWGG	2 cut(s)	295, 462
PspN4I	GGNNCC	1 cut(s)	372
PspOMI	GGGCCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	370, 371
PsuI	RGATCY	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	2 cut(s)	84, 273
RsaNI	GTAC	2 cut(s)	83, 272
RseI	CAYNNNNRTG	3 cut(s)	181, 720, 735
SaqAI	TTAA	6 cut(s)	330, 492, 624, 843, 867, 889
SatI	GCNGC	1 cut(s)	831
Sau3AI	GATC	3 cut(s)	681, 779, 803
Sau96I	GGNCC	2 cut(s)	370, 371
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	2 cut(s)	297, 464
SduI	GDGCHC	2 cut(s)	70, 374
SetI	ASST	8 cut(s)	273, 283, 316, 411, 623, 835, 843, 889
SfaNI	GCATC	2 cut(s)	173, 867
SmiMI	CAYNNNNRTG	3 cut(s)	181, 720, 735
SmlI	CTYRAG	3 cut(s)	61, 74, 427
SmoI	CTYRAG	3 cut(s)	61, 74, 427
Sse9I	AATT	7 cut(s)	35, 94, 524, 694, 794, 858, 864
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	295, 462
StyI	CCWWGG	1 cut(s)	883
TaaI	ACNGT	2 cut(s)	276, 513
TaqI	TCGA	1 cut(s)	148
TasI	AATT	7 cut(s)	35, 94, 524, 694, 794, 858, 864
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	302, 740
Tru1I	TTAA	6 cut(s)	330, 492, 624, 843, 867, 889
Tru9I	TTAA	6 cut(s)	330, 492, 624, 843, 867, 889
TscAI	CASTG	2 cut(s)	290, 825
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	830
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	3 cut(s)	17, 719, 747
TspRI	CASTG	2 cut(s)	290, 825
Van91I	CCANNNNNTGG	1 cut(s)	127
VspI	ATTAAT	1 cut(s)	867
XapI	RAATTY	3 cut(s)	94, 794, 858
XceI	RCATGY	2 cut(s)	176, 750
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.