Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

40181841 .. 40185610

Gene Structure 3770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG267800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGACGCTTTCGTGTTTGATGAATCGGAGAACAGCGGAGCTGGAGGGACTAAAACTAAAAAGGAGAAGAAGGCAAAGGGATGTTTAGTTGGAAGTGCAAGGAAGACGCTTGGTGATATAAGTAACATTCAGCAGCGGCCAAATAAGCAAGCTATCCAGCATGTGAACCAGCAATTCGATTCACTTACTACGAAGAAGTATGTTGAGAATCTAACCAAGGAAAATGTGGCACTGATGAAACTTCTTTCAGACAGAAATAAAGTCATTGAATTGAGCAGAACAGAGTTAGAGAACTTGAGAGCCCATCTTGAGAAAGTACAGCAACAGAATTCTCAACTTGCCCATGCAAACAGCCAGATGTTGGCGGAAGTCACTTCAAGTCGAGATAGGCTAAGGATACTTCAACATGCACTTGGATGCCAAAATGCCTTGCTCAAAGTGAGGAAAGTGGAGGAAAAGGACAACGCCAAACGAGTAAGAAATCAAAATACGACAAATGAAAAGGTACGTTCAGCTAAGTGTGTTGAGCCAGGGGAATCCTCACAAGCTGTCAAGGAACATTTTAAAACGAACAGGAAACGCCAACCACAAAATCAAGCATTGGGCCCTCCTATTGTTGAAGTAGTCCAAAACAACGAGAAGGCTGACAACAAAAGACGCTTGAGAAGGCAATCTGCAATCTTTGAAACCGAAGACCAGGAAACAACTGAAGACTCGTTTGAGATTAAAGATGACAATAAAAGACGGTTGAGAAGGCAATTGGCAAGTGCTAAAACTGAAGAACTACAAGCAACTGAAGACTTGTCTGAGAGTAAACATGAGAACAAAAGAAGTTTGAGAAGGCAATCTGCAAGGTTTAAAACTGAAGAGCCAGAAGTAACTGAAGAAACAAAAGTTACTGAGGACTTATCTGAGATCAATGATGATAATTTTCCTGTTTCTCTTTTGCATAATGATGGGGTTCATGAAAGTGATTCAACATGTCCATTAGTAAAAAACGAGGATGGGGGAAGATCTGAAGAACAAGAATTTCAAAGATCATCTATAAGGCCACTGCGCCGAGCAGCTGAGAAGGTTAAGTCATACAAGGAAATTCCAATTAATGTGAAGATGCGCCAAGTTAGTTTGGTTGAGTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

380

Amino Acids

43.48

Weight (kDa)

9.04

Isoelectric Point (pI)

69.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	350 - 372	1.8e-08	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AciI	CCGC	3 cut(s)	36, 136, 365
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	3 cut(s)	328, 1028, 1092
AcuI	CTGAAG	6 cut(s)	729, 798, 816, 885, 903, 1038
AfaI	GTAC	2 cut(s)	318, 507
AfiI	CCNNNNNNNGG	1 cut(s)	361
AflIII	ACRYGT	1 cut(s)	980
AgsI	TTSAA	7 cut(s)	269, 378, 404, 620, 686, 978, 1034
AjnI	CCWGG	2 cut(s)	529, 696
AluBI	AGCT	5 cut(s)	41, 152, 515, 548, 1067
AluI	AGCT	5 cut(s)	41, 152, 515, 548, 1067
AoxI	GGCC	3 cut(s)	137, 604, 1049
ApaI	GGGCCC	1 cut(s)	608
ApeKI	GCWGC	2 cut(s)	133, 1064
ApoI	RAATTY	3 cut(s)	328, 1028, 1092
AseI	ATTAAT	1 cut(s)	1101
AspLEI	GCGC	2 cut(s)	1059, 1116
AspS9I	GGNCC	2 cut(s)	604, 605
AsuHPI	GGTGA	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	608
BanII	GRGCYC	2 cut(s)	304, 608
BbsI	GAAGAC	4 cut(s)	110, 699, 717, 804
BbvI	GCAGC	2 cut(s)	145, 1076
BccI	CCATC	3 cut(s)	312, 950, 998
BciT130I	CCWGG	2 cut(s)	531, 698
BciVI	GTATCC	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	390
BglII	AGATCT	1 cut(s)	1013
BisI	GCNGC	3 cut(s)	134, 137, 1065
BlsI	GCNGC	3 cut(s)	135, 138, 1066
Bme1390I	CCNGG	2 cut(s)	531, 698
BmgT120I	GGNCC	2 cut(s)	604, 605
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	2 cut(s)	531, 698
BmsI	GCATC	2 cut(s)	407, 1101
BpiI	GAAGAC	4 cut(s)	110, 699, 717, 804
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	3 cut(s)	316, 329, 682
BsaJI	CCNNGG	2 cut(s)	216, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
BseBI	CCWGG	2 cut(s)	531, 698
BseDI	CCNNGG	2 cut(s)	216, 530
BseGI	GGATG	3 cut(s)	86, 422, 1009
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	4 cut(s)	798, 891, 903, 1059
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	145, 1076
BshFI	GGCC	3 cut(s)	139, 606, 1051
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	3 cut(s)	139, 606, 1051
Bsp120I	GGGCCC	1 cut(s)	604
Bsp1286I	GDGCHC	2 cut(s)	304, 608
Bsp143I	GATC	3 cut(s)	915, 1013, 1037
BspACI	CCGC	3 cut(s)	36, 136, 365
BspANI	GGCC	3 cut(s)	139, 606, 1051
BspCNI	CTCAG	4 cut(s)	799, 892, 904, 1060
BspHI	TCATGA	1 cut(s)	964
BspLI	GGNNCC	1 cut(s)	606
BspQI	GCTCTTC	1 cut(s)	861
BssECI	CCNNGG	2 cut(s)	216, 530
BssMI	GATC	3 cut(s)	915, 1013, 1037
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	531, 698
Bst4CI	ACNGT	1 cut(s)	747
Bst6I	CTCTTC	1 cut(s)	861
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	6 cut(s)	392, 516, 807, 900, 912, 1068
BstF5I	GGATG	3 cut(s)	86, 422, 1009
BstHHI	GCGC	2 cut(s)	1059, 1116
BstKTI	GATC	3 cut(s)	918, 1016, 1040
BstMBI	GATC	3 cut(s)	915, 1013, 1037
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	2 cut(s)	531, 698
BstNSI	RCATGY	3 cut(s)	164, 410, 984
BstSCI	CCNGG	2 cut(s)	529, 696
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	2 cut(s)	145, 1076
BstV2I	GAAGAC	4 cut(s)	110, 699, 717, 804
BstX2I	RGATCY	1 cut(s)	1013
BstYI	RGATCY	1 cut(s)	1013
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	139, 606, 1051
BtsCI	GGATG	3 cut(s)	86, 422, 1009
BtsI	GCAGTG	1 cut(s)	1052
BtsIMutI	CAGTG	2 cut(s)	230, 1052
Cac8I	GCNNGC	1 cut(s)	150
CciI	TCATGA	1 cut(s)	964
CfoI	GCGC	2 cut(s)	1059, 1116
Cfr13I	GGNCC	2 cut(s)	604, 605
CseI	GACGC	3 cut(s)	14, 115, 666
Csp6I	GTAC	2 cut(s)	317, 506
CviAII	CATG	6 cut(s)	161, 344, 407, 818, 965, 981
CviQI	GTAC	2 cut(s)	317, 506
DdeI	CTNAG	6 cut(s)	392, 516, 807, 900, 912, 1068
DpnI	GATC	3 cut(s)	917, 1015, 1039
DpnII	GATC	3 cut(s)	915, 1013, 1037
DraI	TTTAAA	2 cut(s)	565, 859
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
EciI	GGCGGA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	304, 608
Eco57I	CTGAAG	6 cut(s)	729, 798, 816, 885, 903, 1038
EcoO109I	RGGNCCY	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	529, 696
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	2 cut(s)	304, 608
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	6 cut(s)	164, 347, 410, 821, 968, 984
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	6 cut(s)	160, 343, 406, 817, 964, 980
Fnu4HI	GCNGC	3 cut(s)	134, 137, 1065
FokI	GGATG	3 cut(s)	93, 429, 1016
FriOI	GRGCYC	2 cut(s)	304, 608
Fsp4HI	GCNGC	3 cut(s)	134, 137, 1065
GlaI	GCGC	2 cut(s)	1058, 1115
GluI	GCNGC	3 cut(s)	134, 137, 1065
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	139, 606, 1051
HgaI	GACGC	3 cut(s)	14, 115, 666
HhaI	GCGC	2 cut(s)	1059, 1116
Hin1II	CATG	6 cut(s)	164, 347, 410, 821, 968, 984
Hin6I	GCGC	2 cut(s)	1057, 1114
HinP1I	GCGC	2 cut(s)	1057, 1114
HinfI	GANTC	6 cut(s)	23, 179, 208, 536, 713, 974
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	166, 815
Hpy188I	TCNGA	5 cut(s)	28, 250, 808, 913, 1018
Hpy188III	TCNNGA	3 cut(s)	308, 383, 965
Hpy8I	GTNNAC	2 cut(s)	166, 815
HpyAV	CCTTC	6 cut(s)	64, 634, 660, 747, 834, 1066
HpyCH4III	ACNGT	1 cut(s)	747
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	6 cut(s)	98, 347, 410, 677, 851, 949
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	6 cut(s)	392, 516, 807, 900, 912, 1068
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	6 cut(s)	164, 347, 410, 821, 968, 984
HspAI	GCGC	2 cut(s)	1057, 1114
Kzo9I	GATC	3 cut(s)	915, 1013, 1037
LguI	GCTCTTC	1 cut(s)	861
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	2 cut(s)	145, 1076
LweI	GCATC	2 cut(s)	407, 1101
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	4 cut(s)	122, 370, 877, 895
MalI	GATC	3 cut(s)	917, 1015, 1039
MboI	GATC	3 cut(s)	915, 1013, 1037
MfeI	CAATTG	1 cut(s)	758
MflI	RGATCY	1 cut(s)	1013
MhlI	GDGCHC	2 cut(s)	304, 608
MluCI	AATT	8 cut(s)	173, 269, 328, 758, 928, 1028, 1092, 1098
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	7 cut(s)	38, 435, 445, 550, 618, 895, 994
MseI	TTAA	5 cut(s)	564, 726, 858, 1077, 1101
MslI	CAYNNNNRTG	3 cut(s)	415, 954, 969
MspA1I	CMGCKG	3 cut(s)	36, 136, 1067
MspR9I	CCNGG	2 cut(s)	531, 698
MunI	CAATTG	1 cut(s)	758
MvaI	CCWGG	2 cut(s)	531, 698
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	3 cut(s)	915, 1013, 1037
NlaIII	CATG	6 cut(s)	164, 347, 410, 821, 968, 984
NlaIV	GGNNCC	1 cut(s)	606
NmeAIII	GCCGAG	1 cut(s)	1085
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	3 cut(s)	164, 410, 984
PagI	TCATGA	1 cut(s)	964
PciI	ACATGT	1 cut(s)	980
PciSI	GCTCTTC	1 cut(s)	861
PfeI	GAWTC	5 cut(s)	23, 179, 208, 536, 974
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	135, 138, 1066
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
PscI	ACATGT	1 cut(s)	980
PshBI	ATTAAT	1 cut(s)	1101
Psp6I	CCWGG	2 cut(s)	529, 696
PspGI	CCWGG	2 cut(s)	529, 696
PspN4I	GGNNCC	1 cut(s)	606
PspOMI	GGGCCC	1 cut(s)	604
PspPI	GGNCC	2 cut(s)	604, 605
PsuI	RGATCY	1 cut(s)	1013
PvuII	CAGCTG	1 cut(s)	1067
RsaI	GTAC	2 cut(s)	318, 507
RsaNI	GTAC	2 cut(s)	317, 506
RseI	CAYNNNNRTG	3 cut(s)	415, 954, 969
SapI	GCTCTTC	1 cut(s)	861
SaqAI	TTAA	5 cut(s)	564, 726, 858, 1077, 1101
SatI	GCNGC	3 cut(s)	134, 137, 1065
Sau3AI	GATC	3 cut(s)	915, 1013, 1037
Sau96I	GGNCC	2 cut(s)	604, 605
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	2 cut(s)	531, 698
SduI	GDGCHC	2 cut(s)	304, 608
SetI	ASST	9 cut(s)	43, 154, 507, 511, 517, 550, 857, 1069, 1077
SfaNI	GCATC	2 cut(s)	407, 1101
SmiMI	CAYNNNNRTG	3 cut(s)	415, 954, 969
SmlI	CTYRAG	3 cut(s)	295, 308, 661
SmoI	CTYRAG	3 cut(s)	295, 308, 661
Sse9I	AATT	8 cut(s)	173, 269, 328, 758, 928, 1028, 1092, 1098
SsiI	CCGC	3 cut(s)	36, 136, 365
StyD4I	CCNGG	2 cut(s)	529, 696
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	747
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	2 cut(s)	177, 382
TasI	AATT	8 cut(s)	173, 269, 328, 758, 928, 1028, 1092, 1098
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	5 cut(s)	23, 179, 208, 536, 974
Tru1I	TTAA	5 cut(s)	564, 726, 858, 1077, 1101
Tru9I	TTAA	5 cut(s)	564, 726, 858, 1077, 1101
TscAI	CASTG	2 cut(s)	237, 1059
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	133, 1064
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	5 cut(s)	36, 251, 513, 953, 981
TspRI	CASTG	2 cut(s)	237, 1059
Van91I	CCANNNNNTGG	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	1101
XapI	RAATTY	3 cut(s)	328, 1028, 1092
XceI	RCATGY	3 cut(s)	164, 410, 984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.