Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Forward (+)

13754024 .. 13756664

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027667

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGACGCTTTCGTGTTTGATGAATCGGAGAACAGCGGAGCTGGAGCTGGAGGGACTAAAACTAAAAAGGAGAAGAAGGCAAAGGGATGTTTAGTGGGAAGTGCAAGGAAGACGCTTGGTGATATAAGTAACATTCAGCAGCGGCCAAATAAGCAAGCTATCCAACATGTGAACCAGCAATTTGATTCACTTACAACGAAGAAGTATGTTGAGAATCTAACCAAGGAAAATGTGGCACTGATGAAACTTCTTTCAGACAGAAATAAAGTCATTGAATTGAGCAGAACAGAATTAGAGAACTTGAGAGCCCATCTTGAGAAAGTACAGCAACAGAATTCTCAACTTGCCCATGCAAACAGCCAGATGTTGGCGGAAGTCACTTCAAGTCGAGATAGGCTAAGGATACTTCAACATGCACTTGGATGCCAAAATGCCTTGCTCAAAGTGAGGAAAGTGGAGGAAAAGGAGAATGCCAAACGAGTAAGAAATCAAAATACGACAAATGAGAAGGTATGTTCAGCTAAGTGTGTTGAACCAGGGGAATCCTCACAAGCTGTCAAGGAACATTTTAATACAAACAGGAAACGCCAACCACAAAATCTAGCATTGGGCCCTCCTATTGTTGAAGTAGTCCAAAACAACGAGAAGGCTGACAACAAAAGACGCTTGAGAAGGCAATCTGCAATCTTTGAAACCGAAGACCAGGAAACAACTGAAGACTCGTTTGAGATTAAAGATGACAATAAAAGACGGTTGAGAAGGCAATTGGCAAGTGCTAAAACTGAAGAACTACAAACAACTGAAGACTTGTCTGAGAGTAAAAATGAGAACAAAAGAAGTTTGAGAAGGCAATCTGCAAGGTTTAAAACTGAAGAGCCAGAAGTAACTGAAGAAACAAAAGTTACTGAGGACTTATCTGAGATCAATGATGATAATTTTCCTGTTTCTCTTTTGCATAATGATGGGGTTCATGAAAGTGATTCAACATGTCCATTAGTAAAAAAAGAGGATGGGGGAAGATCTGAAGAACAAGAATTTCAAAGATCATCTTTAAGGCCACTGCGCCGAGCAGCTGAGAAGGTTAAGTCATACAAGGAAATTCCAATTAATGTGAAGATGCGCCAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

377

Amino Acids

42.87

Weight (kDa)

8.99

Isoelectric Point (pI)

69.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	352 - 374	9.2e-09	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	367
AciI	CCGC	3 cut(s)	36, 142, 371
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	3 cut(s)	334, 1034, 1098
AcuI	CTGAAG	6 cut(s)	735, 804, 822, 891, 909, 1044
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflIII	ACRYGT	2 cut(s)	166, 986
AgsI	TTSAA	8 cut(s)	275, 384, 410, 533, 626, 692, 984, 1040
AjnI	CCWGG	2 cut(s)	535, 702
AluBI	AGCT	6 cut(s)	41, 47, 158, 521, 554, 1073
AluI	AGCT	6 cut(s)	41, 47, 158, 521, 554, 1073
AoxI	GGCC	3 cut(s)	143, 610, 1055
ApaI	GGGCCC	1 cut(s)	614
ApeKI	GCWGC	2 cut(s)	139, 1070
ApoI	RAATTY	3 cut(s)	334, 1034, 1098
AseI	ATTAAT	1 cut(s)	1107
AspLEI	GCGC	2 cut(s)	1065, 1122
AspS9I	GGNCC	2 cut(s)	610, 611
AsuHPI	GGTGA	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	614
BanII	GRGCYC	2 cut(s)	310, 614
BbsI	GAAGAC	4 cut(s)	116, 705, 723, 810
BbvI	GCAGC	2 cut(s)	151, 1082
BccI	CCATC	3 cut(s)	318, 956, 1004
BciT130I	CCWGG	2 cut(s)	537, 704
BciVI	GTATCC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	396
BglII	AGATCT	1 cut(s)	1019
BisI	GCNGC	3 cut(s)	140, 143, 1071
BlsI	GCNGC	3 cut(s)	141, 144, 1072
Bme1390I	CCNGG	2 cut(s)	537, 704
BmgT120I	GGNCC	2 cut(s)	610, 611
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	2 cut(s)	537, 704
BmsI	GCATC	2 cut(s)	413, 1107
BpiI	GAAGAC	4 cut(s)	116, 705, 723, 810
BpmI	CTGGAG	2 cut(s)	63, 69
Bpu10I	CCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	3 cut(s)	322, 335, 688
BsaJI	CCNNGG	3 cut(s)	222, 536, 1123
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	537, 704
BseDI	CCNNGG	3 cut(s)	222, 536, 1123
BseGI	GGATG	3 cut(s)	92, 428, 1015
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	4 cut(s)	804, 897, 909, 1065
BseSI	GKGCMC	1 cut(s)	614
BseXI	GCAGC	2 cut(s)	151, 1082
BshFI	GGCC	3 cut(s)	145, 612, 1057
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	3 cut(s)	145, 612, 1057
Bsp120I	GGGCCC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	310, 614
Bsp143I	GATC	3 cut(s)	921, 1019, 1043
BspACI	CCGC	3 cut(s)	36, 142, 371
BspANI	GGCC	3 cut(s)	145, 612, 1057
BspCNI	CTCAG	4 cut(s)	805, 898, 910, 1066
BspHI	TCATGA	1 cut(s)	970
BspLI	GGNNCC	1 cut(s)	612
BspQI	GCTCTTC	1 cut(s)	867
BssECI	CCNNGG	3 cut(s)	222, 536, 1123
BssMI	GATC	3 cut(s)	921, 1019, 1043
BssT1I	CCWWGG	2 cut(s)	222, 1123
Bst2UI	CCWGG	2 cut(s)	537, 704
Bst4CI	ACNGT	1 cut(s)	753
Bst6I	CTCTTC	1 cut(s)	867
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	6 cut(s)	398, 522, 813, 906, 918, 1074
BstF5I	GGATG	3 cut(s)	92, 428, 1015
BstHHI	GCGC	2 cut(s)	1065, 1122
BstKTI	GATC	3 cut(s)	924, 1022, 1046
BstMBI	GATC	3 cut(s)	921, 1019, 1043
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	2 cut(s)	537, 704
BstNSI	RCATGY	3 cut(s)	170, 416, 990
BstSCI	CCNGG	2 cut(s)	535, 702
BstSLI	GKGCMC	1 cut(s)	614
BstV1I	GCAGC	2 cut(s)	151, 1082
BstV2I	GAAGAC	4 cut(s)	116, 705, 723, 810
BstX2I	RGATCY	1 cut(s)	1019
BstYI	RGATCY	1 cut(s)	1019
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	145, 612, 1057
BtsCI	GGATG	3 cut(s)	92, 428, 1015
BtsI	GCAGTG	1 cut(s)	1058
BtsIMutI	CAGTG	2 cut(s)	236, 1058
Cac8I	GCNNGC	1 cut(s)	156
CciI	TCATGA	1 cut(s)	970
CfoI	GCGC	2 cut(s)	1065, 1122
Cfr13I	GGNCC	2 cut(s)	610, 611
CseI	GACGC	3 cut(s)	14, 121, 672
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	5 cut(s)	167, 350, 413, 971, 987
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	6 cut(s)	398, 522, 813, 906, 918, 1074
DpnI	GATC	3 cut(s)	923, 1021, 1045
DpnII	GATC	3 cut(s)	921, 1019, 1043
DraI	TTTAAA	1 cut(s)	865
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
EciI	GGCGGA	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	222, 1123
Eco24I	GRGCYC	2 cut(s)	310, 614
Eco57I	CTGAAG	6 cut(s)	735, 804, 822, 891, 909, 1044
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	535, 702
EcoT14I	CCWWGG	2 cut(s)	222, 1123
EcoT38I	GRGCYC	2 cut(s)	310, 614
ErhI	CCWWGG	2 cut(s)	222, 1123
FaeI	CATG	5 cut(s)	170, 353, 416, 974, 990
FalI	AAGNNNNNCTT	2 cut(s)	1033, 1065
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	5 cut(s)	166, 349, 412, 970, 986
Fnu4HI	GCNGC	3 cut(s)	140, 143, 1071
FokI	GGATG	3 cut(s)	99, 435, 1022
FriOI	GRGCYC	2 cut(s)	310, 614
Fsp4HI	GCNGC	3 cut(s)	140, 143, 1071
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	2 cut(s)	1064, 1121
GluI	GCNGC	3 cut(s)	140, 143, 1071
GsuI	CTGGAG	2 cut(s)	63, 69
HaeIII	GGCC	3 cut(s)	145, 612, 1057
HgaI	GACGC	3 cut(s)	14, 121, 672
HhaI	GCGC	2 cut(s)	1065, 1122
Hin1II	CATG	5 cut(s)	170, 353, 416, 974, 990
Hin6I	GCGC	2 cut(s)	1063, 1120
HinP1I	GCGC	2 cut(s)	1063, 1120
HinfI	GANTC	6 cut(s)	23, 185, 214, 542, 719, 980
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	5 cut(s)	28, 256, 814, 919, 1024
Hpy188III	TCNNGA	3 cut(s)	314, 389, 971
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	7 cut(s)	70, 502, 640, 666, 753, 840, 1072
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4V	TGCA	6 cut(s)	104, 353, 416, 683, 857, 955
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	6 cut(s)	398, 522, 813, 906, 918, 1074
Hsp92II	CATG	5 cut(s)	170, 353, 416, 974, 990
HspAI	GCGC	2 cut(s)	1063, 1120
Kzo9I	GATC	3 cut(s)	921, 1019, 1043
LguI	GCTCTTC	1 cut(s)	867
LmnI	GCTCC	2 cut(s)	38, 44
Lsp1109I	GCAGC	2 cut(s)	151, 1082
LweI	GCATC	2 cut(s)	413, 1107
MaeI	CTAG	1 cut(s)	602
MaeIII	GTNAC	4 cut(s)	128, 376, 883, 901
MalI	GATC	3 cut(s)	923, 1021, 1045
MboI	GATC	3 cut(s)	921, 1019, 1043
MfeI	CAATTG	1 cut(s)	764
MflI	RGATCY	1 cut(s)	1019
MhlI	GDGCHC	2 cut(s)	310, 614
MluCI	AATT	9 cut(s)	179, 275, 290, 334, 764, 934, 1034, 1098, 1104
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	7 cut(s)	44, 441, 451, 556, 624, 901, 1000
MseI	TTAA	7 cut(s)	570, 732, 864, 1052, 1083, 1107, 1129
MslI	CAYNNNNRTG	3 cut(s)	421, 960, 975
MspA1I	CMGCKG	3 cut(s)	36, 142, 1073
MspR9I	CCNGG	2 cut(s)	537, 704
MunI	CAATTG	1 cut(s)	764
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	2 cut(s)	537, 704
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeII	GATC	3 cut(s)	921, 1019, 1043
NlaIII	CATG	5 cut(s)	170, 353, 416, 974, 990
NlaIV	GGNNCC	1 cut(s)	612
NmeAIII	GCCGAG	1 cut(s)	1091
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	3 cut(s)	170, 416, 990
PagI	TCATGA	1 cut(s)	970
PciI	ACATGT	2 cut(s)	166, 986
PciSI	GCTCTTC	1 cut(s)	867
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	5 cut(s)	23, 185, 214, 542, 980
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	3 cut(s)	141, 144, 1072
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
PscI	ACATGT	2 cut(s)	166, 986
PshBI	ATTAAT	1 cut(s)	1107
Psp6I	CCWGG	2 cut(s)	535, 702
PspGI	CCWGG	2 cut(s)	535, 702
PspN4I	GGNNCC	1 cut(s)	612
PspOMI	GGGCCC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	610, 611
PsuI	RGATCY	1 cut(s)	1019
PvuII	CAGCTG	1 cut(s)	1073
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	3 cut(s)	421, 960, 975
SapI	GCTCTTC	1 cut(s)	867
SaqAI	TTAA	7 cut(s)	570, 732, 864, 1052, 1083, 1107, 1129
SatI	GCNGC	3 cut(s)	140, 143, 1071
Sau3AI	GATC	3 cut(s)	921, 1019, 1043
Sau96I	GGNCC	2 cut(s)	610, 611
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	2 cut(s)	537, 704
SduI	GDGCHC	2 cut(s)	310, 614
SfaNI	GCATC	2 cut(s)	413, 1107
SmiMI	CAYNNNNRTG	3 cut(s)	421, 960, 975
SmlI	CTYRAG	3 cut(s)	301, 314, 667
SmoI	CTYRAG	3 cut(s)	301, 314, 667
Sse9I	AATT	9 cut(s)	179, 275, 290, 334, 764, 934, 1034, 1098, 1104
SsiI	CCGC	3 cut(s)	36, 142, 371
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	2 cut(s)	535, 702
StyI	CCWWGG	2 cut(s)	222, 1123
TaaI	ACNGT	1 cut(s)	753
TaqI	TCGA	1 cut(s)	388
TasI	AATT	9 cut(s)	179, 275, 290, 334, 764, 934, 1034, 1098, 1104
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	5 cut(s)	23, 185, 214, 542, 980
Tru1I	TTAA	7 cut(s)	570, 732, 864, 1052, 1083, 1107, 1129
Tru9I	TTAA	7 cut(s)	570, 732, 864, 1052, 1083, 1107, 1129
TscAI	CASTG	2 cut(s)	243, 1065
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	139, 1070
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	36, 257, 959, 987
TspRI	CASTG	2 cut(s)	243, 1065
Van91I	CCANNNNNTGG	1 cut(s)	367
VspI	ATTAAT	1 cut(s)	1107
XapI	RAATTY	3 cut(s)	334, 1034, 1098
XceI	RCATGY	3 cut(s)	170, 416, 990
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.