Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

24040890 .. 24044480

Gene Structure 3591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G206000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGAAGGTCTCGTCGTTCGTGGCACAGAAAGCGGTGCCGGAGATAACAAGATAAAAGGAGGGAAAATAGCAAAGGGATCTTCAATTGGAAGCACCTCGAGGAAGAGGCTTGCTGATATAAGCAACTTGCAGCATCAGCAGCCTAAACCAGCAATCCAACAGGTGAAGCAGCAATTTGACTCACTTACAAATAAAGAGTATATTGACAATCTACAGAAGGAAAATAGGACACTGATCAAACTTCTTGCTGACAGAAACAAAATCATTGAATTGAGCAGAATAGAGTTACAGAGCTTGAGAATCAATCTGCAAAAAGTACAGCAACAGAATTTGCAACTTGCCCAAGCAAATGGCCAGATGTTAGGGGAACTCAATTCAGGTAAAGATAGGTTAAAGGCACTCCAGCACGAACTTGCATGCAGAAATGGTTTGCTCAAAGTGGGAAAACTGGAGGCTGAGGAGAGAGAGAAAAGAGGAACATGCCAAAATACAGAAAATGAGGGATATTCAGCTAAATACGCTGAGGCAGGGGAGTCCTTGCAAGCAGACAAGGAGAATGGGCCTTGTACCAAAAGGGAACGACAACCAAACCATCTGCCTTTGGGCACTCCTACTGTTGAAGTAGTCCAAGTTAAAGAGAAGGCTGACAACAAAAGACGTCTGAGAAGGCAGTCTGCGAGGTTTAAAACTGAAGAACGGGAAGCAACTGAAGATATGTTTGAGACCAATGGTGAAAAAGTTCCCGTGTCTCCTCTATGTGATAATGTGGTTCATGAAAGTGGCCCAATATGTTCATTAGTGGAAAAAAAAGATCCTACTATTGAAGCAATCCAAGCTAAAGAGAAGCCTGGCAACAAAAGACGTTTGACAAGGCAATCTGCGAGGTTTAAAACTGAAGAACGGGAGGCAACTGAAGAATTGTTTGAAAGCAACGGCGACAAATTTCCTGTCTATCTTCTACGTGATAACGTGGTTCATGAAAGTGGTCCAACATGTTCATTACTAGAAAAAGAAACTCCTACTATTGAAGCAGTCCAGGCTAAGGAGAAGCCTGACAACAAAAGACGTTTGACAAGGCAGTCTGCAAGGTTTAAAACTGAAGAACAGGAAGCAACTGAAGACTTGGTTGAGACCAACGGCGACAAATTTCCTGTCTCTCTATGTGATAATGTGGTTCATGAAAATGGCCCAACATGTTCTTCAGTGGAAAAAGAGGATGAAGGATACAGTGCCCCAAGATCTGAAGGTCAGGAATGTCGAAGATCATCTACAAGGCCGCTGCGACGAGCAGCCAAGAAGATCACGTCATACAAGGAAATTTCAATTAAAGTGAAGATGCGGAGAGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

451

Amino Acids

50.82

Weight (kDa)

8.92

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1078
AatII	GACGTC	1 cut(s)	661
AbsI	CCTCGAGG	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	3 cut(s)	33, 1277, 1339
AclWI	GGATC	2 cut(s)	85, 806
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	4 cut(s)	328, 941, 1145, 1317
AcuI	CTGAAG	8 cut(s)	711, 729, 915, 933, 1119, 1137, 1185, 1263
AcyI	GRCGYC	1 cut(s)	658
AfaI	GTAC	2 cut(s)	318, 568
AfiI	CCNNNNNNNGG	1 cut(s)	1042
AflIII	ACRYGT	2 cut(s)	992, 1193
AgsI	TTSAA	7 cut(s)	84, 269, 620, 824, 926, 1028, 1323
AjiI	CACGTC	1 cut(s)	1305
AjnI	CCWGG	2 cut(s)	847, 1035
AjuI	GAANNNNNNNTTGG	2 cut(s)	1183, 1215
AluBI	AGCT	3 cut(s)	294, 512, 836
AluI	AGCT	3 cut(s)	294, 512, 836
Alw26I	GTCTC	5 cut(s)	14, 716, 753, 1124, 1159
AlwI	GGATC	2 cut(s)	85, 806
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	5 cut(s)	352, 560, 781, 1186, 1274
ApeKI	GCWGC	5 cut(s)	130, 139, 169, 1279, 1289
ApoI	RAATTY	4 cut(s)	328, 941, 1145, 1317
ArsI	GACNNNNNNTTYG	4 cut(s)	933, 965, 1137, 1169
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	4 cut(s)	560, 782, 986, 1187
AsuHPI	GGTGA	2 cut(s)	175, 743
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	986
BaeGI	GKGCMC	2 cut(s)	608, 1234
BalI	TGGCCA	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	35
BarI	GAAGNNNNNNTAC	2 cut(s)	1252, 1284
BbsI	GAAGAC	1 cut(s)	1125
BbvCI	CCTCAGC	2 cut(s)	456, 522
BbvI	GCAGC	5 cut(s)	142, 151, 181, 1266, 1301
BccI	CCATC	1 cut(s)	600
BceAI	ACGGC	2 cut(s)	949, 1153
BciT130I	CCWGG	2 cut(s)	849, 1037
BciVI	GTATCC	1 cut(s)	1217
BclI	TGATCA	1 cut(s)	234
BcoDI	GTCTC	5 cut(s)	14, 716, 753, 1124, 1159
BfaI	CTAG	1 cut(s)	1004
BfmI	CTRYAG	1 cut(s)	212
BfuI	GTATCC	1 cut(s)	1217
BglII	AGATCT	1 cut(s)	1238
BisI	GCNGC	6 cut(s)	131, 140, 170, 1277, 1280, 1290
BlsI	GCNGC	6 cut(s)	132, 141, 171, 1278, 1281, 1291
Bme1390I	CCNGG	2 cut(s)	849, 1037
Bme18I	GGWCC	1 cut(s)	986
BmeT110I	CYCGRG	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	1305
BmgT120I	GGNCC	4 cut(s)	560, 782, 986, 1187
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	849, 1037
BmsI	GCATC	2 cut(s)	142, 1326
BpiI	GAAGAC	1 cut(s)	1125
BpmI	CTGGAG	2 cut(s)	386, 470
Bpu10I	CCTNAGC	3 cut(s)	456, 522, 1041
BpuEI	CTTGAG	1 cut(s)	316
BsaAI	YACGTR	1 cut(s)	962
BsaHI	GRCGYC	1 cut(s)	658
BsaI	GGTCTC	3 cut(s)	14, 716, 1124
Bsc4I	CCNNNNNNNGG	1 cut(s)	1042
Bse1I	ACTGG	1 cut(s)	453
BseBI	CCWGG	2 cut(s)	849, 1037
BseGI	GGATG	1 cut(s)	1222
BseLI	CCNNNNNNNGG	1 cut(s)	1042
BseMII	CTCAG	3 cut(s)	447, 513, 653
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	2 cut(s)	473, 741
BseSI	GKGCMC	2 cut(s)	608, 1234
BseXI	GCAGC	5 cut(s)	142, 151, 181, 1266, 1301
BshFI	GGCC	5 cut(s)	354, 562, 783, 1188, 1276
BshNI	GGYRCC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	1042
BsmAI	GTCTC	5 cut(s)	14, 716, 753, 1124, 1159
BsnI	GGCC	5 cut(s)	354, 562, 783, 1188, 1276
Bso31I	GGTCTC	3 cut(s)	14, 716, 1124
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	608, 1234
Bsp143I	GATC	6 cut(s)	77, 234, 811, 1238, 1262, 1299
BspACI	CCGC	3 cut(s)	33, 1277, 1339
BspANI	GGCC	5 cut(s)	354, 562, 783, 1188, 1276
BspCNI	CTCAG	3 cut(s)	448, 514, 654
BspHI	TCATGA	3 cut(s)	772, 976, 1177
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	85, 806
BspT107I	GGYRCC	1 cut(s)	35
BspTNI	GGTCTC	3 cut(s)	14, 716, 1124
BsrI	ACTGG	1 cut(s)	453
BssMI	GATC	6 cut(s)	77, 234, 811, 1238, 1262, 1299
BssNI	GRCGYC	1 cut(s)	658
Bst2UI	CCWGG	2 cut(s)	849, 1037
Bst4CI	ACNGT	2 cut(s)	616, 1229
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	658
BstBAI	YACGTR	1 cut(s)	962
BstC8I	GCNNGC	3 cut(s)	111, 418, 543
BstDEI	CTNAG	4 cut(s)	456, 522, 662, 1041
BstF5I	GGATG	1 cut(s)	1222
BstKTI	GATC	6 cut(s)	80, 237, 814, 1241, 1265, 1302
BstMAI	GTCTC	5 cut(s)	14, 716, 753, 1124, 1159
BstMBI	GATC	6 cut(s)	77, 234, 811, 1238, 1262, 1299
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 136, 139, 518, 833, 1037
BstNI	CCWGG	2 cut(s)	849, 1037
BstNSI	RCATGY	4 cut(s)	420, 483, 996, 1197
BstSCI	CCNGG	2 cut(s)	847, 1035
BstSFI	CTRYAG	1 cut(s)	212
BstSLI	GKGCMC	2 cut(s)	608, 1234
BstV1I	GCAGC	5 cut(s)	142, 151, 181, 1266, 1301
BstV2I	GAAGAC	1 cut(s)	1125
BstX2I	RGATCY	3 cut(s)	77, 811, 1238
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstYI	RGATCY	3 cut(s)	77, 811, 1238
BsuI	GTATCC	1 cut(s)	1217
BsuRI	GGCC	5 cut(s)	354, 562, 783, 1188, 1276
BtrI	CACGTC	1 cut(s)	1305
BtsCI	GGATG	1 cut(s)	1222
BtsIMutI	CAGTG	3 cut(s)	230, 1209, 1234
Cac8I	GCNNGC	3 cut(s)	111, 418, 543
CciI	TCATGA	3 cut(s)	772, 976, 1177
Cfr13I	GGNCC	4 cut(s)	560, 782, 986, 1187
Csp6I	GTAC	2 cut(s)	317, 567
CviAII	CATG	7 cut(s)	417, 480, 773, 977, 993, 1178, 1194
CviQI	GTAC	2 cut(s)	317, 567
DdeI	CTNAG	4 cut(s)	456, 522, 662, 1041
DpnI	GATC	6 cut(s)	79, 236, 813, 1240, 1264, 1301
DpnII	GATC	6 cut(s)	77, 234, 811, 1238, 1262, 1299
DraI	TTTAAA	3 cut(s)	685, 889, 1093
DrdI	GACNNNNNNGTC	1 cut(s)	1078
DseDI	GACNNNNNNGTC	1 cut(s)	1078
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco31I	GGTCTC	3 cut(s)	14, 716, 1124
Eco47I	GGWCC	1 cut(s)	986
Eco57I	CTGAAG	8 cut(s)	711, 729, 915, 933, 1119, 1137, 1185, 1263
Eco88I	CYCGRG	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	847, 1035
FaeI	CATG	7 cut(s)	420, 483, 776, 980, 996, 1181, 1197
FatI	CATG	7 cut(s)	416, 479, 772, 976, 992, 1177, 1193
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	6 cut(s)	131, 140, 170, 1277, 1280, 1290
FokI	GGATG	1 cut(s)	1229
Fsp4HI	GCNGC	6 cut(s)	131, 140, 170, 1277, 1280, 1290
FspBI	CTAG	1 cut(s)	1004
GluI	GCNGC	6 cut(s)	131, 140, 170, 1277, 1280, 1290
GsuI	CTGGAG	2 cut(s)	386, 470
HaeIII	GGCC	5 cut(s)	354, 562, 783, 1188, 1276
HapII	CCGG	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	658
Hin1II	CATG	7 cut(s)	420, 483, 776, 980, 996, 1181, 1197
HinfI	GANTC	3 cut(s)	179, 300, 533
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	2 cut(s)	175, 743
Hpy188I	TCNGA	3 cut(s)	663, 1243, 1352
Hpy188III	TCNNGA	4 cut(s)	773, 977, 1178, 1250
Hpy99I	CGWCG	2 cut(s)	17, 1287
HpyAV	CCTTC	5 cut(s)	211, 634, 660, 1214, 1238
HpyCH4III	ACNGT	2 cut(s)	616, 1229
HpyCH4IV	ACGT	6 cut(s)	658, 862, 961, 969, 1066, 1304
HpyCH4V	TGCA	7 cut(s)	130, 310, 334, 416, 420, 541, 1085
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 136, 139, 518, 833, 1037
HpyF3I	CTNAG	4 cut(s)	456, 522, 662, 1041
HpySE526I	ACGT	6 cut(s)	658, 862, 961, 969, 1066, 1304
Hsp92I	GRCGYC	1 cut(s)	658
Hsp92II	CATG	7 cut(s)	420, 483, 776, 980, 996, 1181, 1197
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	6 cut(s)	77, 234, 811, 1238, 1262, 1299
Lsp1109I	GCAGC	5 cut(s)	142, 151, 181, 1266, 1301
LweI	GCATC	2 cut(s)	142, 1326
MaeI	CTAG	1 cut(s)	1004
MaeII	ACGT	6 cut(s)	658, 862, 961, 969, 1066, 1304
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	6 cut(s)	79, 236, 813, 1240, 1264, 1301
MboI	GATC	6 cut(s)	77, 234, 811, 1238, 1262, 1299
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	3 cut(s)	77, 811, 1238
MhlI	GDGCHC	2 cut(s)	608, 1234
MlsI	TGGCCA	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	173, 542
MmeI	TCCRAC	2 cut(s)	181, 1013
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	6 cut(s)	392, 633, 684, 888, 1092, 1326
MslI	CAYNNNNRTG	3 cut(s)	777, 981, 1182
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	1279
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	849, 1037
MunI	CAATTG	1 cut(s)	84
MvaI	CCWGG	2 cut(s)	849, 1037
MwoI	GCNNNNNNNGC	6 cut(s)	30, 136, 139, 518, 833, 1037
NdeII	GATC	6 cut(s)	77, 234, 811, 1238, 1262, 1299
NlaIII	CATG	7 cut(s)	420, 483, 776, 980, 996, 1181, 1197
NlaIV	GGNNCC	1 cut(s)	37
NspI	RCATGY	4 cut(s)	420, 483, 996, 1197
PaeI	GCATGC	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	97
PagI	TCATGA	3 cut(s)	772, 976, 1177
PciI	ACATGT	2 cut(s)	992, 1193
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	6 cut(s)	132, 141, 171, 1278, 1281, 1291
PleI	GAGTC	2 cut(s)	173, 541
PpsI	GAGTC	2 cut(s)	173, 541
Ppu21I	YACGTR	1 cut(s)	962
PscI	ACATGT	2 cut(s)	992, 1193
Psp6I	CCWGG	2 cut(s)	847, 1035
PspGI	CCWGG	2 cut(s)	847, 1035
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	4 cut(s)	560, 782, 986, 1187
PspXI	VCTCGAGB	1 cut(s)	97
PsuI	RGATCY	3 cut(s)	77, 811, 1238
RsaI	GTAC	2 cut(s)	318, 568
RsaNI	GTAC	2 cut(s)	317, 567
RseI	CAYNNNNRTG	3 cut(s)	777, 981, 1182
SaqAI	TTAA	6 cut(s)	392, 633, 684, 888, 1092, 1326
SatI	GCNGC	6 cut(s)	131, 140, 170, 1277, 1280, 1290
Sau3AI	GATC	6 cut(s)	77, 234, 811, 1238, 1262, 1299
Sau96I	GGNCC	4 cut(s)	560, 782, 986, 1187
SchI	GAGTC	2 cut(s)	173, 542
ScrFI	CCNGG	2 cut(s)	849, 1037
SduI	GDGCHC	2 cut(s)	608, 1234
SfaNI	GCATC	2 cut(s)	142, 1326
SfcI	CTRYAG	1 cut(s)	212
Sfr274I	CTCGAG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	986
SlaI	CTCGAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	3 cut(s)	777, 981, 1182
SmlI	CTYRAG	2 cut(s)	97, 295
SmoI	CTYRAG	2 cut(s)	97, 295
SphI	GCATGC	1 cut(s)	420
SsiI	CCGC	3 cut(s)	33, 1277, 1339
SspMI	CTAG	1 cut(s)	1004
StyD4I	CCNGG	2 cut(s)	847, 1035
TaaI	ACNGT	2 cut(s)	616, 1229
TaiI	ACGT	6 cut(s)	661, 865, 964, 972, 1069, 1307
TaqI	TCGA	2 cut(s)	98, 1258
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	1 cut(s)	1279
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	6 cut(s)	392, 633, 684, 888, 1092, 1326
Tru9I	TTAA	6 cut(s)	392, 633, 684, 888, 1092, 1326
TscAI	CASTG	3 cut(s)	237, 1209, 1234
TseI	GCWGC	5 cut(s)	130, 139, 169, 1279, 1289
TspDTI	ATGAA	9 cut(s)	761, 783, 789, 965, 987, 993, 1166, 1194, 1233
TspRI	CASTG	3 cut(s)	237, 1209, 1234
VpaK11BI	GGWCC	1 cut(s)	986
XapI	RAATTY	4 cut(s)	328, 941, 1145, 1317
XceI	RCATGY	4 cut(s)	420, 483, 996, 1197
XhoI	CTCGAG	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	1 cut(s)	1004
ZraI	GACGTC	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.