Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

13387813 .. 13390946

Gene Structure 3134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12740.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGAAGGTCTCATCATTCTCGATACGGAGAACGGCGCCGCCGGAGACAACAAGGCAAAGGGAGGGAAAATTTCTAAAGGATTGTCGATTGGAAGTAGCTCACGGAAGAGGCTTGCTGATATTAGCAACTTGCAGCAGCAGTGGCCGAAACCATCGGTTCAACAGGAGAAGCAGCAATTTGATTCAGATACAAATAAAGAGTATATTGACAATCTTCAGAAGGAAAATAGGACACTGACGAAACTTCTTACTGACAGAAAGTATCCTTTTGGCTATCTATTTTACTCATTGTGTATTTCTCTCATTGATGTTCCTAATCTGGTTTGGCATCATGAAATTGGATGCAAAAATGGTTTGCTGAATGTGAGAAAACTGGAGACTGAGGGGAGAGTGAAAAGAGTAACGTGCCAAAGTACAGAAAATCAGGTAGAAGGTTCAACTAAGTGTGTTGAAGCAGGGGAGTCCTTGCAAGCAGATAATGAGGATGGGCCTTGTAATACCAAAAGGGAACGACATCCAAAAAACCCACCTGTGGCTTCTCATACTGTTGAAGTGGTCGAAGTTAAAGTGAAGGCTGACAACAAAAGGCGTTTGAGAAGGCAGTCTGCAAGGTTTAAAACTGAAGAACATGAAGCAACTGAAGAAATGCTTGCGACCAATGGTGGAAAAATTCCTGTCTCTCCTATATGCGATAATGTGGTTCATGAAAGTGAGACGGCATTTTCATTAGTGGACAAAGAGGCTCCTACAATTAAAGCAGTCCAAGCTAACGAGAAGGCTAACAACAAAAGACGTTTTACAAGGCAGTCTGCAAGGTTAAAAACTGAAGAACAGGAAGCAAATGAAGAAATGTTTGAGACCAATGGTTACAAAATTCCCGTCTCTCCTCTATGTGACAATGTGGTTCATGAAAGTGAGACTACATGTTCACTGGGGGAAAAAAAGGATCCTACGAATGAAGAACTCCAACCTAAAGGGAAGGCCAAGAACAAAAGGTGTTTTACGAGGCAATCTGCAAGGTTAAAAACTGAAGAACAGGAAGCACCTGAAGTGTTGTTTGAGACCAATGGCGAAGAGTTTCCCGTCTCTCCTCTGTGTCATAATGTTGCTCATGAAAGTGCTCCGACATGCTCAATGGCGGAAAAAGAGGATCGATCTAGTACTGAAGCAGTCCAAGATAAAGAGAAGGCGGAAAACAAAAGACGTTTGGCAAGGCAGTCCACAAAGTTTAAAACTGAAGAACGGGAAGCAACTGGAGCATCGTTTGAGATCAACGATGACAGAGTCCATGCCTCTTCTCTAAGTGACGATGTGGTTCATGAAAGTGGTTTGACTTGTTCTTCAGTGAAAAAGGAGGATGGCGGATACATTGACCGCATATCTGAAGGCCAGGAATGTCGAAAATCATCTGCCAGGCCACTGCGCCGAGCAACGCAGAGGATTCAGTCATACAAGGAAATTCCAGTTAATGTGAAGATGCGCAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

497

Amino Acids

55.86

Weight (kDa)

6.86

Isoelectric Point (pI)

60.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1481
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	5 cut(s)	39, 1139, 1190, 1362, 1375
AclWI	GGATC	3 cut(s)	941, 954, 1158
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	4 cut(s)	69, 669, 873, 1458
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	415, 1162
AfiI	CCNNNNNNNGG	1 cut(s)	532
AflIII	ACRYGT	1 cut(s)	923
AgsI	TTSAA	4 cut(s)	161, 438, 452, 551
AjnI	CCWGG	2 cut(s)	1389, 1412
AluBI	AGCT	2 cut(s)	99, 767
AluI	AGCT	2 cut(s)	99, 767
Alw21I	GWGCWC	1 cut(s)	1123
AlwI	GGATC	3 cut(s)	941, 954, 1158
AoxI	GGCC	5 cut(s)	143, 488, 981, 1387, 1415
ApeKI	GCWGC	3 cut(s)	133, 136, 172
ApoI	RAATTY	4 cut(s)	69, 669, 873, 1458
ArsI	GACNNNNNNTTYG	2 cut(s)	864, 896
Asp700I	GAANNNNTTC	1 cut(s)	1077
AspLEI	GCGC	3 cut(s)	38, 1425, 1482
AspS9I	GGNCC	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	1123
BbvI	GCAGC	3 cut(s)	145, 148, 184
BccI	CCATC	3 cut(s)	160, 479, 1352
BceAI	ACGGC	2 cut(s)	49, 732
BciT130I	CCWGG	2 cut(s)	1391, 1414
BciVI	GTATCC	2 cut(s)	273, 1358
BfaI	CTAG	1 cut(s)	1158
BfoI	RGCGCY	1 cut(s)	39
BfuI	GTATCC	2 cut(s)	273, 1358
BisI	GCNGC	4 cut(s)	39, 134, 137, 173
BlsI	GCNGC	4 cut(s)	40, 135, 138, 174
BmcAI	AGTACT	1 cut(s)	1162
Bme1390I	CCNGG	2 cut(s)	1391, 1414
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	3 cut(s)	37, 744, 948
BmrFI	CCNGG	2 cut(s)	1391, 1414
BmrI	ACTGGG	1 cut(s)	941
BmsI	GCATC	4 cut(s)	332, 337, 1268, 1467
BmuI	ACTGGG	1 cut(s)	941
BpmI	CTGGAG	2 cut(s)	395, 1275
Bsa29I	ATCGAT	1 cut(s)	1153
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	3 cut(s)	14, 851, 1055
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
Bse1I	ACTGG	4 cut(s)	378, 936, 1258, 1463
BseBI	CCWGG	2 cut(s)	1391, 1414
BseCI	ATCGAT	1 cut(s)	1153
BseGI	GGATG	4 cut(s)	347, 490, 514, 1363
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	4 cut(s)	378, 936, 1258, 1463
BseRI	GAGGAG	2 cut(s)	876, 1080
BseXI	GCAGC	3 cut(s)	145, 148, 184
BshFI	GGCC	5 cut(s)	145, 490, 983, 1389, 1417
BshNI	GGYRCC	1 cut(s)	35
BshVI	ATCGAT	1 cut(s)	1153
BsiHKAI	GWGCWC	1 cut(s)	1123
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmBI	CGTCTC	3 cut(s)	707, 886, 1090
BsnI	GGCC	5 cut(s)	145, 490, 983, 1389, 1417
Bso31I	GGTCTC	3 cut(s)	14, 851, 1055
Bsp1286I	GDGCHC	1 cut(s)	1123
Bsp143I	GATC	4 cut(s)	946, 1150, 1154, 1269
BspACI	CCGC	5 cut(s)	39, 1139, 1190, 1362, 1375
BspANI	GGCC	5 cut(s)	145, 490, 983, 1389, 1417
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	1 cut(s)	1153
BspHI	TCATGA	5 cut(s)	331, 703, 907, 1111, 1318
BspLI	GGNNCC	3 cut(s)	37, 744, 948
BspPI	GGATC	3 cut(s)	941, 954, 1158
BspT107I	GGYRCC	1 cut(s)	35
BspTNI	GGTCTC	3 cut(s)	14, 851, 1055
BsrI	ACTGG	4 cut(s)	378, 936, 1258, 1463
BssMI	GATC	4 cut(s)	946, 1150, 1154, 1269
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	1391, 1414
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	3 cut(s)	101, 1068, 1300
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	114, 471, 651
BstDEI	CTNAG	3 cut(s)	381, 441, 1301
BstF5I	GGATG	4 cut(s)	347, 490, 514, 1363
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	3 cut(s)	38, 1425, 1482
BstKTI	GATC	4 cut(s)	949, 1153, 1157, 1272
BstMBI	GATC	4 cut(s)	946, 1150, 1154, 1269
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 764, 1256
BstNI	CCWGG	2 cut(s)	1391, 1414
BstNSI	RCATGY	2 cut(s)	927, 1131
BstSCI	CCNGG	2 cut(s)	1389, 1412
BstV1I	GCAGC	3 cut(s)	145, 148, 184
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
Bsu15I	ATCGAT	1 cut(s)	1153
BsuI	GTATCC	2 cut(s)	273, 1358
BsuRI	GGCC	5 cut(s)	145, 490, 983, 1389, 1417
BsuTUI	ATCGAT	1 cut(s)	1153
BtsCI	GGATG	4 cut(s)	347, 490, 514, 1363
BtsI	GCAGTG	2 cut(s)	146, 1418
BtsIMutI	CAGTG	5 cut(s)	146, 233, 929, 1350, 1418
Cac8I	GCNNGC	3 cut(s)	114, 471, 651
CciI	TCATGA	5 cut(s)	331, 703, 907, 1111, 1318
CfoI	GCGC	3 cut(s)	38, 1425, 1482
Cfr13I	GGNCC	1 cut(s)	488
ClaI	ATCGAT	1 cut(s)	1153
Csp6I	GTAC	2 cut(s)	414, 1161
CviAII	CATG	9 cut(s)	332, 629, 704, 908, 924, 1112, 1128, 1289, 1319
CviQI	GTAC	2 cut(s)	414, 1161
DdeI	CTNAG	3 cut(s)	381, 441, 1301
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	4 cut(s)	948, 1152, 1156, 1271
DpnII	GATC	4 cut(s)	946, 1150, 1154, 1269
DraI	TTTAAA	2 cut(s)	616, 1231
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	3 cut(s)	101, 1068, 1300
EarI	CTCTTC	3 cut(s)	101, 1068, 1300
EciI	GGCGGA	3 cut(s)	1154, 1205, 1377
Eco31I	GGTCTC	3 cut(s)	14, 851, 1055
EcoRII	CCWGG	2 cut(s)	1389, 1412
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
Esp3I	CGTCTC	3 cut(s)	707, 886, 1090
FaeI	CATG	9 cut(s)	335, 632, 707, 911, 927, 1115, 1131, 1292, 1322
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FatI	CATG	9 cut(s)	331, 628, 703, 907, 923, 1111, 1127, 1288, 1318
Fnu4HI	GCNGC	4 cut(s)	39, 134, 137, 173
FokI	GGATG	4 cut(s)	354, 497, 501, 1370
Fsp4HI	GCNGC	4 cut(s)	39, 134, 137, 173
FspBI	CTAG	1 cut(s)	1158
FspI	TGCGCA	1 cut(s)	1481
GlaI	GCGC	3 cut(s)	37, 1424, 1481
GluI	GCNGC	4 cut(s)	39, 134, 137, 173
GsuI	CTGGAG	2 cut(s)	395, 1275
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	5 cut(s)	145, 490, 983, 1389, 1417
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	3 cut(s)	38, 1425, 1482
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	9 cut(s)	335, 632, 707, 911, 927, 1115, 1131, 1292, 1322
Hin6I	GCGC	3 cut(s)	36, 1423, 1480
HinP1I	GCGC	3 cut(s)	36, 1423, 1480
HinfI	GANTC	4 cut(s)	182, 461, 1284, 1441
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	3 cut(s)	733, 929, 1221
Hpy188I	TCNGA	4 cut(s)	187, 219, 1125, 1384
Hpy188III	TCNNGA	6 cut(s)	20, 332, 704, 908, 1112, 1319
Hpy8I	GTNNAC	3 cut(s)	733, 929, 1221
HpyAV	CCTTC	8 cut(s)	214, 425, 565, 591, 769, 973, 1180, 1379
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	3 cut(s)	404, 793, 1204
HpyCH4V	TGCA	6 cut(s)	133, 345, 469, 608, 812, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 764, 1256
HpyF3I	CTNAG	3 cut(s)	381, 441, 1301
HpySE526I	ACGT	3 cut(s)	404, 793, 1204
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	9 cut(s)	335, 632, 707, 911, 927, 1115, 1131, 1292, 1322
HspAI	GCGC	3 cut(s)	36, 1423, 1480
KasI	GGCGCC	1 cut(s)	35
Kzo9I	GATC	4 cut(s)	946, 1150, 1154, 1269
LmnI	GCTCC	3 cut(s)	748, 1126, 1256
Lsp1109I	GCAGC	3 cut(s)	145, 148, 184
LweI	GCATC	4 cut(s)	332, 337, 1268, 1467
MaeI	CTAG	1 cut(s)	1158
MaeII	ACGT	3 cut(s)	404, 793, 1204
MaeIII	GTNAC	4 cut(s)	400, 866, 893, 1304
MalI	GATC	4 cut(s)	948, 1152, 1156, 1271
MboI	GATC	4 cut(s)	946, 1150, 1154, 1269
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	1 cut(s)	1123
MluCI	AATT	7 cut(s)	69, 176, 336, 669, 750, 873, 1458
Mly113I	GGCGCC	1 cut(s)	36
MlyI	GAGTC	2 cut(s)	470, 1293
MmeI	TCCRAC	2 cut(s)	991, 1148
MroXI	GAANNNNTTC	1 cut(s)	1077
MseI	TTAA	7 cut(s)	564, 615, 753, 818, 1022, 1230, 1467
MslI	CAYNNNNRTG	4 cut(s)	708, 912, 1116, 1323
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	1391, 1414
MvaI	CCWGG	2 cut(s)	1391, 1414
MwoI	GCNNNNNNNGC	3 cut(s)	142, 764, 1256
NarI	GGCGCC	1 cut(s)	36
NdeII	GATC	4 cut(s)	946, 1150, 1154, 1269
NlaIII	CATG	9 cut(s)	335, 632, 707, 911, 927, 1115, 1131, 1292, 1322
NlaIV	GGNNCC	3 cut(s)	37, 744, 948
NmeAIII	GCCGAG	1 cut(s)	1451
NmuCI	GTSAC	2 cut(s)	893, 1304
NsbI	TGCGCA	1 cut(s)	1481
NspI	RCATGY	2 cut(s)	927, 1131
PagI	TCATGA	5 cut(s)	331, 703, 907, 1111, 1318
PciI	ACATGT	1 cut(s)	923
PdmI	GAANNNNTTC	1 cut(s)	1077
PfeI	GAWTC	2 cut(s)	182, 1441
PflFI	GACNNNGTC	1 cut(s)	1283
PkrI	GCNGC	4 cut(s)	40, 135, 138, 174
PleI	GAGTC	2 cut(s)	469, 1292
PluTI	GGCGCC	1 cut(s)	39
PpsI	GAGTC	2 cut(s)	469, 1292
PscI	ACATGT	1 cut(s)	923
Psp6I	CCWGG	2 cut(s)	1389, 1412
PspGI	CCWGG	2 cut(s)	1389, 1412
PspN4I	GGNNCC	3 cut(s)	37, 744, 948
PspPI	GGNCC	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	946
PsyI	GACNNNGTC	1 cut(s)	1283
RsaI	GTAC	2 cut(s)	415, 1162
RsaNI	GTAC	2 cut(s)	414, 1161
RseI	CAYNNNNRTG	4 cut(s)	708, 912, 1116, 1323
SaqAI	TTAA	7 cut(s)	564, 615, 753, 818, 1022, 1230, 1467
SatI	GCNGC	4 cut(s)	39, 134, 137, 173
Sau3AI	GATC	4 cut(s)	946, 1150, 1154, 1269
Sau96I	GGNCC	1 cut(s)	488
ScaI	AGTACT	1 cut(s)	1162
SchI	GAGTC	2 cut(s)	470, 1293
ScrFI	CCNGG	2 cut(s)	1391, 1414
SduI	GDGCHC	1 cut(s)	1123
SfaNI	GCATC	4 cut(s)	332, 337, 1268, 1467
SfoI	GGCGCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	4 cut(s)	708, 912, 1116, 1323
Sse9I	AATT	7 cut(s)	69, 176, 336, 669, 750, 873, 1458
SsiI	CCGC	5 cut(s)	39, 1139, 1190, 1362, 1375
SspDI	GGCGCC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	1158
StyD4I	CCNGG	2 cut(s)	1389, 1412
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	3 cut(s)	407, 796, 1207
TaqI	TCGA	5 cut(s)	21, 86, 558, 1153, 1399
TasI	AATT	7 cut(s)	69, 176, 336, 669, 750, 873, 1458
TatI	WGTACW	2 cut(s)	413, 1160
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	182, 1441
Tru1I	TTAA	7 cut(s)	564, 615, 753, 818, 1022, 1230, 1467
Tru9I	TTAA	7 cut(s)	564, 615, 753, 818, 1022, 1230, 1467
TscAI	CASTG	5 cut(s)	146, 240, 936, 1350, 1425
TseFI	GTSAC	2 cut(s)	893, 1304
TseI	GCWGC	3 cut(s)	133, 136, 172
Tsp45I	GTSAC	2 cut(s)	893, 1304
TspGWI	ACGGA	2 cut(s)	41, 118
TspRI	CASTG	5 cut(s)	146, 240, 936, 1350, 1425
Tth111I	GACNNNGTC	1 cut(s)	1283
XapI	RAATTY	4 cut(s)	69, 669, 873, 1458
XceI	RCATGY	2 cut(s)	927, 1131
XmnI	GAANNNNTTC	1 cut(s)	1077
XspI	CTAG	1 cut(s)	1158
ZrmI	AGTACT	1 cut(s)	1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.