Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

53736241 .. 53739426

Gene Structure 3186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG305000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGACGCTTTCGTGTTTGATGAATCGGAGAACAGCGGAGCTGGAGCTGGAGGGACTAAAACTAAAAAGGAGAAGAAGGCAAAGGGATGTTTAGTTGGAAGTGCAAGGAAGACGCTTGGTGATATAAGTAACATTCAGCAGCGGCCAAATAAGCAAGCTATCCAGCATGTGAACCAGCAATTCGATTCACTTACTACCAAGAAGTATGTTGAGAATCTAACCAAGGAAAATGTGGCACTGATGAAACTTCTTTCAGACAGAAATAAAGTCATTGAATTGAGCAGAACAGAGTTAGAGAACTTGAGAGCCCATCTTGAGAAAGTACAGCAACAGAATTCTCAACTTGCCCATGCAAACAGCCAGATGTTGGCGGAAGTCACTTCAAGTCGAGATAGGCTAAGGATACTTCAACATGCACTTGGATGCCAAAATGCCTTACTCAAAGTTAGGAAAGTGGAGGAAAAGGAGAACACCAAACGAGTAAGAAATCAAAATACGACAAATGAGAAGGTACGGTCAGCTCAGTGTGTTGAGCCAGGGGAATCCTCACAAGCTGTCAAGGAACATTTTAATACGAACAGGAAACGCCAACCACAAAATCTAGCATTGGGCCCTCCTATTGTTGAAGTCGTCCAAAACAACGAGAAGGTTGACAACAAAAGACGCTTGAGAAGGCAATCTGCAATCTTTGAAACCGAAGACCAGGAAACAACTGAAGACTCGTTTGAGATTAAAGATGACAATAAAAGACGGTTGAGAAGGCAATTGGCAAGTGCTAAAACTGAAGAACTACAAGCAACTGAAGACTTGTCTGAGAGTAAAAATGAGAACAAAAGGTTTATTACCTTGTGTTTAATTGCTCTCTGCAAGTACATGTTTTCAGTGAGTTTTCACTTTATTTACTTGTGCTTTGTGGTTTCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

308

Amino Acids

35.23

Weight (kDa)

9.27

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	367
AciI	CCGC	3 cut(s)	36, 142, 371
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	3 cut(s)	735, 804, 822
AfaI	GTAC	3 cut(s)	324, 513, 872
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflIII	ACRYGT	1 cut(s)	873
AgsI	TTSAA	5 cut(s)	275, 384, 410, 626, 692
AjnI	CCWGG	2 cut(s)	535, 702
AluBI	AGCT	5 cut(s)	41, 47, 158, 521, 554
AluI	AGCT	5 cut(s)	41, 47, 158, 521, 554
AoxI	GGCC	2 cut(s)	143, 610
ApaI	GGGCCC	1 cut(s)	614
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	610, 611
AsuHPI	GGTGA	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	614
BanII	GRGCYC	2 cut(s)	310, 614
BbsI	GAAGAC	4 cut(s)	116, 705, 723, 810
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	318
BciT130I	CCWGG	2 cut(s)	537, 704
BciVI	GTATCC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	140, 143
BlsI	GCNGC	2 cut(s)	141, 144
Bme1390I	CCNGG	2 cut(s)	537, 704
BmgT120I	GGNCC	2 cut(s)	610, 611
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	2 cut(s)	537, 704
BmsI	GCATC	1 cut(s)	413
BpiI	GAAGAC	4 cut(s)	116, 705, 723, 810
BpmI	CTGGAG	2 cut(s)	63, 69
Bpu10I	CCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	3 cut(s)	322, 335, 688
BsaJI	CCNNGG	2 cut(s)	222, 536
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	537, 704
BseDI	CCNNGG	2 cut(s)	222, 536
BseGI	GGATG	2 cut(s)	92, 428
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	536, 804
BseSI	GKGCMC	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	2 cut(s)	145, 612
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	145, 612
Bsp120I	GGGCCC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	310, 614
BspACI	CCGC	3 cut(s)	36, 142, 371
BspANI	GGCC	2 cut(s)	145, 612
BspCNI	CTCAG	2 cut(s)	535, 805
BspLI	GGNNCC	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	222, 536
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	537, 704
Bst4CI	ACNGT	2 cut(s)	516, 753
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	3 cut(s)	398, 522, 813
BstF5I	GGATG	2 cut(s)	92, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	2 cut(s)	537, 704
BstNSI	RCATGY	3 cut(s)	170, 416, 877
BstSCI	CCNGG	2 cut(s)	535, 702
BstSLI	GKGCMC	1 cut(s)	614
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	4 cut(s)	116, 705, 723, 810
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	145, 612
BtsCI	GGATG	2 cut(s)	92, 428
BtsIMutI	CAGTG	3 cut(s)	236, 530, 888
Cac8I	GCNNGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	610, 611
CseI	GACGC	3 cut(s)	14, 121, 672
Csp6I	GTAC	3 cut(s)	323, 512, 871
CviAII	CATG	4 cut(s)	167, 350, 413, 874
CviQI	GTAC	3 cut(s)	323, 512, 871
DdeI	CTNAG	3 cut(s)	398, 522, 813
EaeI	YGGCCR	1 cut(s)	143
EciI	GGCGGA	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	2 cut(s)	310, 614
Eco57I	CTGAAG	3 cut(s)	735, 804, 822
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	535, 702
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	310, 614
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	4 cut(s)	170, 353, 416, 877
FaiI	YATR	6 cut(s)	125, 168, 207, 351, 414, 875
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	4 cut(s)	166, 349, 412, 873
Fnu4HI	GCNGC	2 cut(s)	140, 143
FokI	GGATG	2 cut(s)	99, 435
FriOI	GRGCYC	2 cut(s)	310, 614
Fsp4HI	GCNGC	2 cut(s)	140, 143
FspBI	CTAG	1 cut(s)	602
GluI	GCNGC	2 cut(s)	140, 143
GsuI	CTGGAG	2 cut(s)	63, 69
HaeIII	GGCC	2 cut(s)	145, 612
HgaI	GACGC	3 cut(s)	14, 121, 672
Hin1II	CATG	4 cut(s)	170, 353, 416, 877
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	5 cut(s)	23, 185, 214, 542, 719
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	172, 652
Hpy188I	TCNGA	4 cut(s)	28, 256, 814, 922
Hpy188III	TCNNGA	2 cut(s)	314, 389
Hpy8I	GTNNAC	2 cut(s)	172, 652
HpyAV	CCTTC	5 cut(s)	70, 502, 640, 666, 753
HpyCH4III	ACNGT	2 cut(s)	516, 753
HpyCH4V	TGCA	5 cut(s)	104, 353, 416, 683, 867
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	398, 522, 813
Hsp92II	CATG	4 cut(s)	170, 353, 416, 877
LmnI	GCTCC	2 cut(s)	38, 44
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	602
MaeIII	GTNAC	2 cut(s)	128, 376
MboII	GAAGA	6 cut(s)	85, 121, 710, 728, 797, 815
MfeI	CAATTG	1 cut(s)	764
MhlI	GDGCHC	2 cut(s)	310, 614
MluCI	AATT	5 cut(s)	179, 275, 334, 764, 855
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	4 cut(s)	44, 451, 556, 624
MseI	TTAA	3 cut(s)	570, 732, 854
MslI	CAYNNNNRTG	1 cut(s)	421
MspA1I	CMGCKG	2 cut(s)	36, 142
MspR9I	CCNGG	2 cut(s)	537, 704
MunI	CAATTG	1 cut(s)	764
MvaI	CCWGG	2 cut(s)	537, 704
MwoI	GCNNNNNNNGC	1 cut(s)	151
NlaIII	CATG	4 cut(s)	170, 353, 416, 877
NlaIV	GGNNCC	1 cut(s)	612
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	3 cut(s)	170, 416, 877
PciI	ACATGT	1 cut(s)	873
PfeI	GAWTC	4 cut(s)	23, 185, 214, 542
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	141, 144
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
PscI	ACATGT	1 cut(s)	873
Psp6I	CCWGG	2 cut(s)	535, 702
PspGI	CCWGG	2 cut(s)	535, 702
PspN4I	GGNNCC	1 cut(s)	612
PspOMI	GGGCCC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	610, 611
RsaI	GTAC	3 cut(s)	324, 513, 872
RsaNI	GTAC	3 cut(s)	323, 512, 871
RseI	CAYNNNNRTG	1 cut(s)	421
SaqAI	TTAA	3 cut(s)	570, 732, 854
SatI	GCNGC	2 cut(s)	140, 143
Sau96I	GGNCC	2 cut(s)	610, 611
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	2 cut(s)	537, 704
SduI	GDGCHC	2 cut(s)	310, 614
SetI	ASST	9 cut(s)	43, 49, 160, 513, 523, 556, 651, 839, 848
SfaNI	GCATC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	421
SmlI	CTYRAG	3 cut(s)	301, 314, 667
SmoI	CTYRAG	3 cut(s)	301, 314, 667
Sse9I	AATT	5 cut(s)	179, 275, 334, 764, 855
SsiI	CCGC	3 cut(s)	36, 142, 371
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	2 cut(s)	535, 702
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	516, 753
TaqI	TCGA	2 cut(s)	183, 388
TasI	AATT	5 cut(s)	179, 275, 334, 764, 855
TatI	WGTACW	2 cut(s)	322, 870
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	4 cut(s)	23, 185, 214, 542
Tru1I	TTAA	3 cut(s)	570, 732, 854
Tru9I	TTAA	3 cut(s)	570, 732, 854
TscAI	CASTG	3 cut(s)	243, 530, 888
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	36, 257
TspRI	CASTG	3 cut(s)	243, 530, 888
Van91I	CCANNNNNTGG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	3 cut(s)	170, 416, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.