Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

15378283 .. 15381334

Gene Structure 3052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGACGCTTTCCTGTTCGATGAATCGGAGAACAGCGGAGCCGGAGGTGCTAAAACTAAGAAGGATAAGAAGGGAAAGGGGTGTTTAGTAGGAAGTGCAAGGAAGACACTTGGTGATATAAGTAACATTCAGCAGAGGCAAAATAAACAAGCTATCCAACATGTAAAGCTGGAATTTGATTCACTTACAACAAAGAAGTATGTGGAGAATCTGACAAAGGAAAATACCGCACTGATGAAACTTCTTTCAGACAGAAATAAAACTATTGAATTGAGCAGAACAGAGTTACAGAACTTGAGAGCCAATCTTGAGACAGTGCAGCAACATAATTCTCAACTTGCTCGTGCACACAGCCAGATGTTAGAGGAAGTCACTTCAAGTCGAGATAGGCTAAGGATACTTCAACATGCACTTGGATGCCAAAATGCCTTGCTCAAAGTGAGGAAAGTGGAGGAAAAGGAGAAAGCCAAACGAGTAAGAAATCAAGCTAGGATAAATGTGGAGGTAGGTTCAGTTCAGTGTTTTGAGCCAGGTGATTCCTCACAAGCTGTCATGGACCATTTTAATACTAACAGGAAACGGCAACCACAAAATCTTGCATTGGCCCCTCCTATTGTTGAAGCAGTCCGAAACAACGAGAAGGCTGACAACAAAAGACGCACGAGAAGGCAATCTGCAATCTTTGAAACTGATGACCAGGAAACAACTGAAGACTCGTTTGAGATTAAAGATGACAATAAAAGACGGTTGAGAAGGCAATTGGCAAGTGCTAAAACTGAAGAACCACAAGCAAATTTAGACTTGTCTGAGAGTAAAAATGAGAACAACAGAAGTTTGAGAAGGCAATCTGCAAGGTTTAAAACTGAAGAGCCAGAAGGAACTGAAGAAACAAAAATTACTGAGGACTCATCTGAGATGAATGATGATAATTTTCTTGTCTCTCGTTTGTGTGATGATGTGGTTAATGAAAGTGAGTCGACACTTTCATTAGTGAAATGTGAGGATGGGGGAAGATCTGAAGAACAAGAATTTCAAAGATCATCTATAAGGCCACTGCGCCGAGCAGCTGAGAAGGTCAAGTCATACAAGGAAATTCCAATTAATGTGAAGATGCGCCAAGGTGAAAATAACACGACATTAATCGGCAGCCGAGAAAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

388

Amino Acids

44.16

Weight (kDa)

8.91

Isoelectric Point (pI)

67.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	350 - 372	1.8e-08	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	977
AciI	CCGC	2 cut(s)	36, 228
AcsI	RAATTY	4 cut(s)	173, 793, 1028, 1092
AcuI	CTGAAG	5 cut(s)	729, 798, 885, 903, 1038
AdeI	CACNNNGTG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	6 cut(s)	269, 378, 404, 620, 686, 1034
AjnI	CCWGG	2 cut(s)	529, 696
AluBI	AGCT	5 cut(s)	152, 169, 488, 548, 1067
AluI	AGCT	5 cut(s)	152, 169, 488, 548, 1067
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	305, 943
Alw44I	GTGCAC	1 cut(s)	345
AoxI	GGCC	2 cut(s)	603, 1049
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	3 cut(s)	319, 1064, 1146
ApoI	RAATTY	4 cut(s)	173, 793, 1028, 1092
AseI	ATTAAT	2 cut(s)	1101, 1139
AspLEI	GCGC	2 cut(s)	1059, 1116
AspS9I	GGNCC	2 cut(s)	556, 604
AsuHPI	GGTGA	3 cut(s)	125, 545, 1133
AvaII	GGWCC	1 cut(s)	556
BaeGI	GKGCMC	1 cut(s)	349
BauI	CACGAG	2 cut(s)	342, 661
BbsI	GAAGAC	2 cut(s)	110, 717
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	331, 1076, 1158
BccI	CCATC	1 cut(s)	998
BceAI	ACGGC	1 cut(s)	596
BciT130I	CCWGG	2 cut(s)	531, 698
BciVI	GTATCC	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	305, 943
BfaI	CTAG	1 cut(s)	489
BfuI	GTATCC	1 cut(s)	390
BglII	AGATCT	1 cut(s)	1013
BisI	GCNGC	3 cut(s)	320, 1065, 1147
BlsI	GCNGC	3 cut(s)	321, 1066, 1148
Bme1390I	CCNGG	2 cut(s)	531, 698
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	2 cut(s)	556, 604
BmiI	GGNNCC	2 cut(s)	40, 606
BmrFI	CCNGG	2 cut(s)	531, 698
BmsI	GCATC	2 cut(s)	407, 1101
BpiI	GAAGAC	2 cut(s)	110, 717
Bpu10I	CCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	316, 329
BsaJI	CCNNGG	1 cut(s)	1117
BseBI	CCWGG	2 cut(s)	531, 698
BseDI	CCNNGG	1 cut(s)	1117
BseGI	GGATG	2 cut(s)	422, 1009
BseMII	CTCAG	4 cut(s)	798, 891, 903, 1059
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	3 cut(s)	331, 1076, 1158
BsgI	GTGCAG	1 cut(s)	338
BshFI	GGCC	2 cut(s)	605, 1051
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	42
BsmAI	GTCTC	2 cut(s)	305, 943
BsnI	GGCC	2 cut(s)	605, 1051
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	1013, 1037
BspACI	CCGC	2 cut(s)	36, 228
BspANI	GGCC	2 cut(s)	605, 1051
BspCNI	CTCAG	4 cut(s)	799, 892, 904, 1060
BspLI	GGNNCC	2 cut(s)	40, 606
BspQI	GCTCTTC	1 cut(s)	861
BssECI	CCNNGG	1 cut(s)	1117
BssMI	GATC	2 cut(s)	1013, 1037
BssSI	CACGAG	2 cut(s)	342, 661
BssT1I	CCWWGG	1 cut(s)	1117
Bst2BI	CACGAG	2 cut(s)	342, 661
Bst2UI	CCWGG	2 cut(s)	531, 698
Bst4CI	ACNGT	2 cut(s)	316, 747
Bst6I	CTCTTC	1 cut(s)	861
BstDEI	CTNAG	6 cut(s)	57, 392, 807, 900, 912, 1068
BstF5I	GGATG	2 cut(s)	422, 1009
BstHHI	GCGC	2 cut(s)	1059, 1116
BstKTI	GATC	2 cut(s)	1016, 1040
BstMAI	GTCTC	2 cut(s)	305, 943
BstMBI	GATC	2 cut(s)	1013, 1037
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	531, 698
BstNSI	RCATGY	2 cut(s)	164, 410
BstSCI	CCNGG	2 cut(s)	529, 696
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	3 cut(s)	331, 1076, 1158
BstV2I	GAAGAC	2 cut(s)	110, 717
BstX2I	RGATCY	1 cut(s)	1013
BstYI	RGATCY	1 cut(s)	1013
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	605, 1051
BtsCI	GGATG	2 cut(s)	422, 1009
BtsI	GCAGTG	1 cut(s)	1052
BtsIMutI	CAGTG	4 cut(s)	230, 321, 524, 1052
CfoI	GCGC	2 cut(s)	1059, 1116
Cfr13I	GGNCC	2 cut(s)	556, 604
CseI	GACGC	2 cut(s)	14, 666
CviAII	CATG	3 cut(s)	161, 407, 553
DdeI	CTNAG	6 cut(s)	57, 392, 807, 900, 912, 1068
DpnI	GATC	2 cut(s)	1015, 1039
DpnII	GATC	2 cut(s)	1013, 1037
DraI	TTTAAA	1 cut(s)	859
DraIII	CACNNNGTG	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
Eco130I	CCWWGG	1 cut(s)	1117
Eco47I	GGWCC	1 cut(s)	556
Eco57I	CTGAAG	5 cut(s)	729, 798, 885, 903, 1038
EcoRII	CCWGG	2 cut(s)	529, 696
EcoT14I	CCWWGG	1 cut(s)	1117
ErhI	CCWWGG	1 cut(s)	1117
FaeI	CATG	3 cut(s)	164, 410, 556
FaiI	YATR	8 cut(s)	119, 162, 201, 327, 408, 554, 1046, 1084
FatI	CATG	3 cut(s)	160, 406, 552
FblI	GTMKAC	1 cut(s)	977
Fnu4HI	GCNGC	3 cut(s)	320, 1065, 1147
FokI	GGATG	2 cut(s)	429, 1016
Fsp4HI	GCNGC	3 cut(s)	320, 1065, 1147
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	2 cut(s)	1058, 1115
GluI	GCNGC	3 cut(s)	320, 1065, 1147
HaeIII	GGCC	2 cut(s)	605, 1051
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	2 cut(s)	14, 666
HhaI	GCGC	2 cut(s)	1059, 1116
Hin1II	CATG	3 cut(s)	164, 410, 556
Hin6I	GCGC	2 cut(s)	1057, 1114
HinP1I	GCGC	2 cut(s)	1057, 1114
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HinfI	GANTC	7 cut(s)	23, 179, 208, 536, 713, 905, 974
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	3 cut(s)	125, 545, 1133
Hpy166II	GTNNAC	2 cut(s)	347, 978
Hpy188I	TCNGA	7 cut(s)	28, 213, 250, 629, 808, 913, 1018
Hpy188III	TCNNGA	2 cut(s)	308, 383
Hpy8I	GTNNAC	2 cut(s)	347, 978
HpyAV	CCTTC	8 cut(s)	55, 64, 634, 660, 747, 834, 869, 1066
HpyCH4III	ACNGT	2 cut(s)	316, 747
HpyCH4V	TGCA	7 cut(s)	98, 319, 347, 410, 599, 677, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	6 cut(s)	57, 392, 807, 900, 912, 1068
Hsp92II	CATG	3 cut(s)	164, 410, 556
HspAI	GCGC	2 cut(s)	1057, 1114
Kzo9I	GATC	2 cut(s)	1013, 1037
LguI	GCTCTTC	1 cut(s)	861
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	3 cut(s)	331, 1076, 1158
LweI	GCATC	2 cut(s)	407, 1101
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	3 cut(s)	122, 285, 370
MalI	GATC	2 cut(s)	1015, 1039
MboI	GATC	2 cut(s)	1013, 1037
MboII	GAAGA	8 cut(s)	115, 722, 791, 878, 896, 1023, 1031, 1120
MfeI	CAATTG	1 cut(s)	758
MflI	RGATCY	1 cut(s)	1013
MhlI	GDGCHC	1 cut(s)	349
MlyI	GAGTC	3 cut(s)	707, 899, 983
MmeI	TCCRAC	1 cut(s)	181
MseI	TTAA	6 cut(s)	564, 726, 858, 963, 1101, 1139
MslI	CAYNNNNRTG	1 cut(s)	415
MspA1I	CMGCKG	2 cut(s)	36, 1067
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	531, 698
MunI	CAATTG	1 cut(s)	758
MvaI	CCWGG	2 cut(s)	531, 698
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	2 cut(s)	1013, 1037
NlaIII	CATG	3 cut(s)	164, 410, 556
NlaIV	GGNNCC	2 cut(s)	40, 606
NmeAIII	GCCGAG	1 cut(s)	1085
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	2 cut(s)	164, 410
PciI	ACATGT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	861
PfeI	GAWTC	4 cut(s)	23, 179, 208, 536
PkrI	GCNGC	3 cut(s)	321, 1066, 1148
PleI	GAGTC	3 cut(s)	707, 899, 982
PpsI	GAGTC	3 cut(s)	707, 899, 982
PscI	ACATGT	1 cut(s)	160
PshBI	ATTAAT	2 cut(s)	1101, 1139
Psp6I	CCWGG	2 cut(s)	529, 696
PspGI	CCWGG	2 cut(s)	529, 696
PspN4I	GGNNCC	2 cut(s)	40, 606
PspPI	GGNCC	2 cut(s)	556, 604
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
PsuI	RGATCY	1 cut(s)	1013
PvuII	CAGCTG	1 cut(s)	1067
RseI	CAYNNNNRTG	1 cut(s)	415
SalI	GTCGAC	1 cut(s)	976
SapI	GCTCTTC	1 cut(s)	861
SaqAI	TTAA	6 cut(s)	564, 726, 858, 963, 1101, 1139
SatI	GCNGC	3 cut(s)	320, 1065, 1147
Sau3AI	GATC	2 cut(s)	1013, 1037
Sau96I	GGNCC	2 cut(s)	556, 604
SchI	GAGTC	3 cut(s)	707, 899, 983
ScrFI	CCNGG	2 cut(s)	531, 698
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	407, 1101
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	1 cut(s)	415
SmlI	CTYRAG	2 cut(s)	295, 308
SmoI	CTYRAG	2 cut(s)	295, 308
SsiI	CCGC	2 cut(s)	36, 228
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	529, 696
StyI	CCWWGG	1 cut(s)	1117
TaaI	ACNGT	2 cut(s)	316, 747
TaqI	TCGA	3 cut(s)	18, 382, 977
TfiI	GAWTC	4 cut(s)	23, 179, 208, 536
Tru1I	TTAA	6 cut(s)	564, 726, 858, 963, 1101, 1139
Tru9I	TTAA	6 cut(s)	564, 726, 858, 963, 1101, 1139
TscAI	CASTG	4 cut(s)	237, 321, 524, 1059
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	3 cut(s)	319, 1064, 1146
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	5 cut(s)	36, 251, 932, 975, 981
TspRI	CASTG	4 cut(s)	237, 321, 524, 1059
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	556
VspI	ATTAAT	2 cut(s)	1101, 1139
XapI	RAATTY	4 cut(s)	173, 793, 1028, 1092
XceI	RCATGY	2 cut(s)	164, 410
XmiI	GTMKAC	1 cut(s)	977
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.