Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Forward (+)

9065475 .. 9073463

Gene Structure 7989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGAATAATTACGAAAAGAGGCTCAGAGCCGCGGCGGAGATCATACTCGCCGACGACGCACGCGCTTCTCCGGCGCGTGTCAGCGCCGAAGAGCTCGGCGTGACGGCGACGCTGAAGCCGCACCAAGTCGAAGGCGTCTCGTGGCTCATTCGGCGGTACAATCTCGGCGTCAACGTCATTCTCGGAGATGAGATGGGACTAGGCAAGACTCTGCAAGCTGTTGCTTTGTTGAGCTATTTGATGGTTCAAAAGAGGTCAAGTGGACCATTCTTGGTGATGTGTCCTCTAAGCGTGACTGATGGTTGGGTCTCGGAAATGGAAAACTTTGCTCCAAAATTAAAAGTTGTACGGTATGTTGGCGAGAAAGAATATAGGCGCAGCTTACGAAGGACAATATATGAGCATGTGAAAGAACATTCCTCAGTATCTGATTTAATGTCGTTACCTTTCGATGTCCTGTTGACGACATATGACATCGCGTTGACCGATCAGGATTTTCTTTCTCAAATACCATGGAACTATGCAGTAATTGATGAAGCACAAAGGCTCAAAAACCCTTCCAGTGTTCTGTACAATGTCCTAAGAGAGCGGTATCTCATTCCAAGAAGGTTACTGATGACTGGCACACCTATTCAAAACAATCTCACTGAACTTTGGGCTCTGATGTATTTTTGTATGCCCTCAGTCTTTCTGAAATTGGACGAGTTCCTTGTTACATTCAAGGAAGCTGGTGATCCTTTGTCAGGTTATAATACACCTGAAGTTATAGAACAACTCAAAAGTTTAAAAGGCATATTGGGGGCTTTCATGCTACGCCGCACAAAATCTAAGCTTATTGAGAATGGAGATCTATTCTTGCCATCCCTTACTGAGATAACAGTGCTGGCACCACTGGTCAGCTTGCAAAAGAAGGTTTACATGTCAATATTGAGGAAGGAGCTCCCGAAGCTACTTGCACTGTCTTCTGGAGGTTCAAATCATCAATCCTTACAGAATATTGTGATACAATTACGAAAAGCTTGTAGCCATCCTTATCTCTTCCCTGGTATTGAGCCAGAACCATATGAAGAGGGTGAACACCTGATTCAGGCTAGTGGTAAACTTATGATTTTGGATCGACTACTTCAAAAGCTGCATGAGAGGGGACACCGTGTCCTTCTCTTTGCTCAGATGACGCATACACTCGATGTTCTACAGGACTTCCTTGAGTTGCGAAAATATTCATATGAACGCCTTGATGGATCAATTCGGGCTGAGGAGCGGTTTGCTGCTATAAGAAGTTTCAGCAGGCAATCAGCAAAACAAAGCTTGAAGTCTCAAGCTGATCAAAATGATGCTTTTGTCTTTATGATCTCCACTAGAGCTGGGGGAGTTGGCTTGAATCTTGTTGCCGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCCCAGGTTGATAAGCAAGCTTTGCAGAGGGCACACAGGATTGGTCAATTGAATTCTGTGCTGTCGATAAACCTTGTTACAGGACGTACAGTGGAGGAGGTTATCATGCGGAGAGCAGAGAGGAAGTTGCAGCTTAGCCATAATGTTATTGGGAATGATGTTATGGACGAGGATGGTAAAGAAACAGTAGGAGTTGAACCCAGTGACCTGCGATCTATTATATTTGGGTTACATCTCTTTGATCCTGCTGAAATCAACAGTGGTGAGTGTGAGATATCAGAATTGAATGCTTTGGCAGAGAAGGCGATTTCAGTGCGCCATAAAGAAACAGCAACCAAAGATGAGAGGAAATTTGAGGTCAGTCAAACAGATGTATTGAGTGGAAGAGATCTGGTTGTTGGAGAAAGTTCTACTTCTCTCGGTTTAAATACTGGTTTCGATGAAGCTTCATATCTCTCATGGGTTGAGAAATTCAAGGAGGTACCACAAGCAACTAGCAAAGAAAATACAGATATGGGAAGCAGAAAAAACTTACTTGAGGAAAGGCATCTAAAACTTGAGGCTGCAAAAAAGAGAGCGGAGGAAAAGAAGTTAGCCAGGTGGGTAGACCTTGGCTACCAATCATTGTCCATTGAGGACCCCATCACTCCTGTAGATAGGGACGTCATGTCCGACTCAGGATCTGTCCAGTTTGTGTATGGAGATTGTACACAACCATCAAAAGTTTCTCCCTCTGAGCCTACCATTATTTTCAGCTGTGTTGATGATTCTGGACAGTGGGGTCGTGGAGGAATGTTTCATGCACTGGAGAAGCTATCTACAAGTGTCCCTGATGCATATCAACGAGCTTCTGAATTTGATGACCTGCATCTTGGTGATCTTCACCTTATAAGAGTTACCGAGGATTCAGATGAACAGAAGGACAGCAATCCCCCTCAATGGGTGGCTTTAGCTGTTGTACAATCTTATAATCCCAGGCGTAAAGTACCCCGGAGCAACATATCTATTCCTGATTTGGAATGTTGCTTATCAAAGGCATCGTTTTCAGCTGCTCAAAGTTCTGCTTCAATCCACATGCCACGTATTGGGTATCAAGATGCATCAGATCGTGCAGAATGGTATACCGTGGAACGTCTTCTACGAAAACACGCCTCTATTCATGGCATAAAGATTTATGTGTATTATTATAGACGGTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

877

Amino Acids

98.87

Weight (kDa)

6.12

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	41 - 346	1.5e-66	SNF2-related domain
HDA2-3	PF11496	296 - 436	3.5e-06	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	367 - 491	5.8e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	750, 2318, 2397
AasI	GACNNNNNNGTC	1 cut(s)	2208
AatII	GACGTC	1 cut(s)	2094
Acc36I	ACCTGC	2 cut(s)	1644, 2301
Acc65I	GGTACC	1 cut(s)	1909
AccB1I	GGYRCC	2 cut(s)	886, 1909
AccB7I	CCANNNNNTGG	1 cut(s)	2513
AccBSI	CCGCTC	3 cut(s)	589, 1261, 2006
AccI	GTMKAC	2 cut(s)	2034, 2549
AccII	CGCG	4 cut(s)	32, 63, 76, 479
AclWI	GGATC	5 cut(s)	728, 1122, 1249, 1664, 2116
AcsI	RAATTY	4 cut(s)	1480, 1778, 1898, 2282
AcuI	CTGAAG	2 cut(s)	134, 780
AcyI	GRCGYC	3 cut(s)	135, 168, 2091
AfaI	GTAC	8 cut(s)	158, 348, 572, 1516, 1911, 2137, 2388, 2415
AfiI	CCNNNNNNNGG	5 cut(s)	743, 1087, 2367, 2368, 2513
AflIII	ACRYGT	1 cut(s)	918
AhdI	GACNNNNNGTC	2 cut(s)	1151, 2095
AjnI	CCWGG	4 cut(s)	1042, 1431, 2024, 2402
Alw21I	GWGCWC	2 cut(s)	96, 942
Alw26I	GTCTC	3 cut(s)	142, 313, 1320
AlwI	GGATC	5 cut(s)	728, 1122, 1249, 1664, 2116
AlwNI	CAGNNNCTG	2 cut(s)	428, 2111
ApeKI	GCWGC	6 cut(s)	378, 1132, 1268, 1558, 1991, 2477
ApoI	RAATTY	4 cut(s)	1480, 1778, 1898, 2282
Asp700I	GAANNNNTTC	2 cut(s)	1219, 2562
Asp718I	GGTACC	1 cut(s)	1909
AspLEI	GCGC	5 cut(s)	65, 76, 86, 378, 1746
AspS9I	GGNCC	2 cut(s)	263, 2065
AsuC2I	CCSGG	1 cut(s)	2419
AsuHPI	GGTGA	6 cut(s)	286, 743, 1085, 1703, 2303, 2315
AvaII	GGWCC	2 cut(s)	263, 2065
BaeGI	GKGCMC	1 cut(s)	1462
BanI	GGYRCC	2 cut(s)	886, 1909
BanII	GRGCYC	3 cut(s)	96, 661, 942
BauI	CACGAG	1 cut(s)	139
BbsI	GAAGAC	2 cut(s)	954, 2555
Bbv12I	GWGCWC	2 cut(s)	96, 942
BbvCI	CCTCAGC	1 cut(s)	1254
BbvI	GCAGC	6 cut(s)	390, 1119, 1255, 1570, 1978, 2464
BccI	CCATC	9 cut(s)	187, 235, 293, 868, 1035, 1232, 1595, 2078, 2152
BceAI	ACGGC	1 cut(s)	120
BcgI	CGANNNNNNTGC	2 cut(s)	1723, 1757
BciT130I	CCWGG	4 cut(s)	1044, 1433, 2026, 2404
BclI	TGATCA	1 cut(s)	1324
BcnI	CCSGG	1 cut(s)	2419
BcoDI	GTCTC	3 cut(s)	142, 313, 1320
BfaI	CTAG	4 cut(s)	200, 1092, 1359, 1923
BfmI	CTRYAG	2 cut(s)	1193, 2079
BfoI	RGCGCY	1 cut(s)	87
BfuAI	ACCTGC	2 cut(s)	1644, 2301
BglII	AGATCT	2 cut(s)	847, 1816
BlpI	GCTNAGC	1 cut(s)	1562
Bme1390I	CCNGG	5 cut(s)	1044, 1433, 2026, 2404, 2419
Bme18I	GGWCC	2 cut(s)	263, 2065
BmeRI	GACNNNNNGTC	2 cut(s)	1151, 2095
BmgT120I	GGNCC	2 cut(s)	263, 2065
BmiI	GGNNCC	3 cut(s)	888, 1911, 2067
BmrFI	CCNGG	5 cut(s)	1044, 1433, 2026, 2404, 2419
BmrI	ACTGGG	1 cut(s)	1623
BmsI	GCATC	7 cut(s)	1324, 1984, 2251, 2305, 2474, 2515, 2537
BmuI	ACTGGG	1 cut(s)	1623
BpiI	GAAGAC	2 cut(s)	954, 2555
BpmI	CTGGAG	2 cut(s)	987, 2255
Bpu10I	CCTNAGC	1 cut(s)	1254
Bpu1102I	GCTNAGC	1 cut(s)	1562
BpuEI	CTTGAG	4 cut(s)	1226, 1302, 1985, 2006
BpuMI	CCSGG	1 cut(s)	2419
BsaAI	YACGTR	1 cut(s)	2510
BsaBI	GATNNNNATC	2 cut(s)	1425, 2265
BsaHI	GRCGYC	3 cut(s)	135, 168, 2091
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	9 cut(s)	30, 512, 1042, 1431, 2038, 2328, 2402, 2417, 2553
Bsc4I	CCNNNNNNNGG	5 cut(s)	743, 1087, 2367, 2368, 2513
Bse1I	ACTGG	7 cut(s)	561, 625, 897, 1629, 1864, 2116, 2238
Bse8I	GATNNNNATC	2 cut(s)	1425, 2265
BseBI	CCWGG	4 cut(s)	1044, 1433, 2026, 2404
BseDI	CCNNGG	9 cut(s)	30, 512, 1042, 1431, 2038, 2328, 2402, 2417, 2553
BseGI	GGATG	3 cut(s)	860, 1027, 1606
BseJI	GATNNNNATC	2 cut(s)	1425, 2265
BseLI	CCNNNNNNNGG	5 cut(s)	743, 1087, 2367, 2368, 2513
BseMII	CTCAG	8 cut(s)	37, 435, 696, 861, 1181, 1245, 2118, 2154
BseNI	ACTGG	7 cut(s)	561, 625, 897, 1629, 1864, 2116, 2238
BseRI	GAGGAG	2 cut(s)	1271, 1538
BseSI	GKGCMC	1 cut(s)	1462
BseXI	GCAGC	6 cut(s)	390, 1119, 1255, 1570, 1978, 2464
BseYI	CCCAGC	1 cut(s)	1364
BsgI	GTGCAG	1 cut(s)	2559
Bsh1236I	CGCG	4 cut(s)	32, 63, 76, 479
BshNI	GGYRCC	2 cut(s)	886, 1909
BsiHKAI	GWGCWC	2 cut(s)	96, 942
BsiSI	CCGG	2 cut(s)	71, 2419
BslFI	GGGAC	4 cut(s)	210, 1158, 2102, 2240
BslI	CCNNNNNNNGG	5 cut(s)	743, 1087, 2367, 2368, 2513
BsmAI	GTCTC	3 cut(s)	142, 313, 1320
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	4 cut(s)	210, 1158, 2102, 2240
BsmI	GAATGC	1 cut(s)	1720
Bso31I	GGTCTC	1 cut(s)	313
Bsp1286I	GDGCHC	4 cut(s)	96, 661, 942, 1462
Bsp1407I	TGTACA	3 cut(s)	570, 2135, 2386
Bsp1720I	GCTNAGC	1 cut(s)	1562
Bsp19I	CCATGG	1 cut(s)	512
BspCNI	CTCAG	8 cut(s)	36, 434, 695, 862, 1180, 1246, 2117, 2155
BspFNI	CGCG	4 cut(s)	32, 63, 76, 479
BspLI	GGNNCC	3 cut(s)	888, 1911, 2067
BspMI	ACCTGC	2 cut(s)	1644, 2301
BspPI	GGATC	5 cut(s)	728, 1122, 1249, 1664, 2116
BspQI	GCTCTTC	1 cut(s)	84
BspT107I	GGYRCC	2 cut(s)	886, 1909
BspTNI	GGTCTC	1 cut(s)	313
BsrBI	CCGCTC	3 cut(s)	589, 1261, 2006
BsrGI	TGTACA	3 cut(s)	570, 2135, 2386
BsrI	ACTGG	7 cut(s)	561, 625, 897, 1629, 1864, 2116, 2238
BssECI	CCNNGG	9 cut(s)	30, 512, 1042, 1431, 2038, 2328, 2402, 2417, 2553
BssNAI	GTATAC	1 cut(s)	2550
BssNI	GRCGYC	3 cut(s)	135, 168, 2091
BssSI	CACGAG	1 cut(s)	139
BssT1I	CCWWGG	2 cut(s)	512, 2038
Bst1107I	GTATAC	1 cut(s)	2550
Bst2BI	CACGAG	1 cut(s)	139
Bst2UI	CCWGG	4 cut(s)	1044, 1433, 2026, 2404
Bst6I	CTCTTC	4 cut(s)	84, 1043, 1062, 1807
BstACI	GRCGYC	3 cut(s)	135, 168, 2091
BstAPI	GCANNNNNTGC	1 cut(s)	1450
BstAUI	TGTACA	3 cut(s)	570, 2135, 2386
BstBAI	YACGTR	1 cut(s)	2510
BstC8I	GCNNGC	6 cut(s)	61, 216, 885, 902, 1289, 1446
BstDSI	CCRYGG	3 cut(s)	30, 512, 2553
BstENI	CCTNNNNNAGG	2 cut(s)	741, 1085
BstF5I	GGATG	3 cut(s)	860, 1027, 1606
BstFNI	CGCG	4 cut(s)	32, 63, 76, 479
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	5 cut(s)	65, 76, 86, 378, 1746
BstMAI	GTCTC	3 cut(s)	142, 313, 1320
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 71, 118, 151, 946, 1450, 1730
BstNI	CCWGG	4 cut(s)	1044, 1433, 2026, 2404
BstNSI	RCATGY	3 cut(s)	407, 922, 2506
BstSCI	CCNGG	5 cut(s)	1042, 1431, 2024, 2402, 2417
BstSFI	CTRYAG	2 cut(s)	1193, 2079
BstSLI	GKGCMC	1 cut(s)	1462
BstUI	CGCG	4 cut(s)	32, 63, 76, 479
BstV1I	GCAGC	6 cut(s)	390, 1119, 1255, 1570, 1978, 2464
BstV2I	GAAGAC	2 cut(s)	954, 2555
BstX2I	RGATCY	3 cut(s)	847, 1816, 2108
BstYI	RGATCY	3 cut(s)	847, 1816, 2108
BstZ17I	GTATAC	1 cut(s)	2550
BtgI	CCRYGG	3 cut(s)	30, 512, 2553
BtgZI	GCGATG	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	860, 1027, 1606
BveI	ACCTGC	2 cut(s)	1644, 2301
Cac8I	GCNNGC	6 cut(s)	61, 216, 885, 902, 1289, 1446
CaiI	CAGNNNCTG	2 cut(s)	428, 2111
CfoI	GCGC	5 cut(s)	65, 76, 86, 378, 1746
Cfr13I	GGNCC	2 cut(s)	263, 2065
Cfr42I	CCGCGG	1 cut(s)	33
CseI	GACGC	5 cut(s)	65, 118, 124, 157, 1183
Csp6I	GTAC	8 cut(s)	157, 347, 571, 1515, 1910, 2136, 2387, 2414
CviQI	GTAC	8 cut(s)	157, 347, 571, 1515, 1910, 2136, 2387, 2414
DraI	TTTAAA	2 cut(s)	786, 1854
DrdI	GACNNNNNNGTC	1 cut(s)	2208
DriI	GACNNNNNGTC	2 cut(s)	1151, 2095
DseDI	GACNNNNNNGTC	1 cut(s)	2208
Eam1104I	CTCTTC	4 cut(s)	84, 1043, 1062, 1807
Eam1105I	GACNNNNNGTC	2 cut(s)	1151, 2095
EarI	CTCTTC	4 cut(s)	84, 1043, 1062, 1807
EciI	GGCGGA	1 cut(s)	50
Ecl136II	GAGCTC	2 cut(s)	94, 940
Eco130I	CCWWGG	2 cut(s)	512, 2038
Eco24I	GRGCYC	3 cut(s)	96, 661, 942
Eco31I	GGTCTC	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	1704
Eco47I	GGWCC	2 cut(s)	263, 2065
Eco53kI	GAGCTC	2 cut(s)	94, 940
Eco57I	CTGAAG	2 cut(s)	134, 780
EcoICRI	GAGCTC	2 cut(s)	94, 940
EcoNI	CCTNNNNNAGG	2 cut(s)	741, 1085
EcoO109I	RGGNCCY	1 cut(s)	2065
EcoRI	GAATTC	1 cut(s)	1480
EcoRII	CCWGG	4 cut(s)	1042, 1431, 2024, 2402
EcoRV	GATATC	1 cut(s)	1704
EcoT14I	CCWWGG	2 cut(s)	512, 2038
EcoT22I	ATGCAT	2 cut(s)	2266, 2530
EcoT38I	GRGCYC	3 cut(s)	96, 661, 942
ErhI	CCWWGG	2 cut(s)	512, 2038
Esp3I	CGTCTC	1 cut(s)	142
FalI	AAGNNNNNCTT	4 cut(s)	1825, 1857, 2476, 2508
FaqI	GGGAC	4 cut(s)	210, 1158, 2102, 2240
FauNDI	CATATG	3 cut(s)	469, 1063, 1225
FbaI	TGATCA	1 cut(s)	1324
FblI	GTMKAC	2 cut(s)	2034, 2549
FokI	GGATG	3 cut(s)	847, 1014, 1613
FriOI	GRGCYC	3 cut(s)	96, 661, 942
FspBI	CTAG	4 cut(s)	200, 1092, 1359, 1923
GlaI	GCGC	5 cut(s)	64, 75, 85, 377, 1745
GsaI	CCCAGC	1 cut(s)	1368
GsuI	CTGGAG	2 cut(s)	987, 2255
HaeII	RGCGCY	1 cut(s)	87
HapII	CCGG	2 cut(s)	71, 2419
HgaI	GACGC	5 cut(s)	65, 118, 124, 157, 1183
HhaI	GCGC	5 cut(s)	65, 76, 86, 378, 1746
Hin1I	GRCGYC	3 cut(s)	135, 168, 2091
Hin6I	GCGC	5 cut(s)	63, 74, 84, 376, 1744
HinP1I	GCGC	5 cut(s)	63, 74, 84, 376, 1744
HincII	GTYRAC	3 cut(s)	172, 462, 483
HindII	GTYRAC	3 cut(s)	172, 462, 483
HindIII	AAGCTT	5 cut(s)	830, 1017, 1306, 1446, 1872
HinfI	GANTC	7 cut(s)	208, 1084, 1381, 1426, 2102, 2195, 2333
HpaII	CCGG	2 cut(s)	71, 2419
HphI	GGTGA	6 cut(s)	286, 743, 1085, 1703, 2303, 2315
Hpy188III	TCNNGA	8 cut(s)	491, 943, 966, 2106, 2199, 2438, 2522, 2628
Hpy99I	CGWCG	3 cut(s)	56, 59, 112
HpyAV	CCTTC	9 cut(s)	125, 381, 567, 600, 904, 928, 1166, 1723, 2341
HpyCH4IV	ACGT	5 cut(s)	174, 1513, 2091, 2509, 2560
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 71, 118, 151, 946, 1450, 1730
HpySE526I	ACGT	5 cut(s)	174, 1513, 2091, 2509, 2560
Hsp92I	GRCGYC	3 cut(s)	135, 168, 2091
HspAI	GCGC	5 cut(s)	63, 74, 84, 376, 1744
KpnI	GGTACC	1 cut(s)	1913
Ksp22I	TGATCA	1 cut(s)	1324
KspI	CCGCGG	1 cut(s)	33
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	5 cut(s)	334, 937, 945, 1258, 2421
Lsp1109I	GCAGC	6 cut(s)	390, 1119, 1255, 1570, 1978, 2464
LweI	GCATC	7 cut(s)	1324, 1984, 2251, 2305, 2474, 2515, 2537
MaeI	CTAG	4 cut(s)	200, 1092, 1359, 1923
MaeII	ACGT	5 cut(s)	174, 1513, 2091, 2509, 2560
MaeIII	GTNAC	9 cut(s)	100, 292, 441, 609, 712, 1504, 1631, 1656, 2323
MbiI	CCGCTC	3 cut(s)	589, 1261, 2006
MboII	GAAGA	7 cut(s)	101, 954, 1030, 1079, 1824, 2300, 2555
MfeI	CAATTG	1 cut(s)	1475
MflI	RGATCY	3 cut(s)	847, 1816, 2108
MhlI	GDGCHC	4 cut(s)	96, 661, 942, 1462
MlyI	GAGTC	2 cut(s)	202, 2096
MmeI	TCCRAC	2 cut(s)	1807, 2124
Mph1103I	ATGCAT	2 cut(s)	2266, 2530
MroXI	GAANNNNTTC	2 cut(s)	1219, 2562
MseI	TTAA	4 cut(s)	338, 434, 785, 1853
MslI	CAYNNNNRTG	1 cut(s)	2301
MspA1I	CMGCKG	4 cut(s)	32, 1394, 2184, 2477
MspI	CCGG	2 cut(s)	71, 2419
MspR9I	CCNGG	5 cut(s)	1044, 1433, 2026, 2404, 2419
MunI	CAATTG	1 cut(s)	1475
Mva1269I	GAATGC	1 cut(s)	1720
MvaI	CCWGG	4 cut(s)	1044, 1433, 2026, 2404
MvnI	CGCG	4 cut(s)	32, 63, 76, 479
MwoI	GCNNNNNNNGC	7 cut(s)	56, 71, 118, 151, 946, 1450, 1730
NciI	CCSGG	1 cut(s)	2419
NcoI	CCATGG	1 cut(s)	512
NdeI	CATATG	3 cut(s)	469, 1063, 1225
NlaIV	GGNNCC	3 cut(s)	888, 1911, 2067
NmeAIII	GCCGAG	2 cut(s)	75, 144
NmuCI	GTSAC	3 cut(s)	100, 292, 1631
NsiI	ATGCAT	2 cut(s)	2266, 2530
NspI	RCATGY	3 cut(s)	407, 922, 2506
PciI	ACATGT	1 cut(s)	918
PciSI	GCTCTTC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	4 cut(s)	171, 483, 2097, 2566
PctI	GAATGC	1 cut(s)	1720
PdmI	GAANNNNTTC	2 cut(s)	1219, 2562
PfeI	GAWTC	5 cut(s)	1084, 1381, 1426, 2195, 2333
PflMI	CCANNNNNTGG	1 cut(s)	2513
PleI	GAGTC	2 cut(s)	202, 2096
PpsI	GAGTC	2 cut(s)	202, 2096
Ppu21I	YACGTR	1 cut(s)	2510
PpuMI	RGGWCCY	1 cut(s)	2065
PscI	ACATGT	1 cut(s)	918
PsiI	TTATAA	3 cut(s)	750, 2318, 2397
Psp124BI	GAGCTC	2 cut(s)	96, 942
Psp5II	RGGWCCY	1 cut(s)	2065
Psp6I	CCWGG	4 cut(s)	1042, 1431, 2024, 2402
PspFI	CCCAGC	1 cut(s)	1364
PspGI	CCWGG	4 cut(s)	1042, 1431, 2024, 2402
PspN4I	GGNNCC	3 cut(s)	888, 1911, 2067
PspPI	GGNCC	2 cut(s)	263, 2065
PspPPI	RGGWCCY	1 cut(s)	2065
PsrI	GAACNNNNNNTAC	2 cut(s)	2550, 2582
PstNI	CAGNNNCTG	2 cut(s)	428, 2111
PsuI	RGATCY	3 cut(s)	847, 1816, 2108
PvuII	CAGCTG	2 cut(s)	2184, 2477
RsaI	GTAC	8 cut(s)	158, 348, 572, 1516, 1911, 2137, 2388, 2415
RsaNI	GTAC	8 cut(s)	157, 347, 571, 1515, 1910, 2136, 2387, 2414
RseI	CAYNNNNRTG	1 cut(s)	2301
SacI	GAGCTC	2 cut(s)	96, 942
SacII	CCGCGG	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	338, 434, 785, 1853
Sau96I	GGNCC	2 cut(s)	263, 2065
SchI	GAGTC	2 cut(s)	202, 2096
ScrFI	CCNGG	5 cut(s)	1044, 1433, 2026, 2404, 2419
SduI	GDGCHC	4 cut(s)	96, 661, 942, 1462
SfaNI	GCATC	7 cut(s)	1324, 1984, 2251, 2305, 2474, 2515, 2537
SfcI	CTRYAG	2 cut(s)	1193, 2079
Sfr303I	CCGCGG	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	33
SinI	GGWCC	2 cut(s)	263, 2065
SmiMI	CAYNNNNRTG	1 cut(s)	2301
SmlI	CTYRAG	4 cut(s)	1205, 1317, 1964, 1985
SmoI	CTYRAG	4 cut(s)	1205, 1317, 1964, 1985
SspI	AATATT	3 cut(s)	927, 997, 1220
SspMI	CTAG	4 cut(s)	200, 1092, 1359, 1923
SstI	GAGCTC	2 cut(s)	96, 942
StyD4I	CCNGG	5 cut(s)	1042, 1431, 2024, 2402, 2417
StyI	CCWWGG	2 cut(s)	512, 2038
TaiI	ACGT	5 cut(s)	177, 1516, 2094, 2512, 2563
TaqI	TCGA	6 cut(s)	129, 450, 1117, 1185, 1493, 1866
TaqII	GACCGA	1 cut(s)	500
TatI	WGTACW	3 cut(s)	570, 2135, 2386
TauI	GCSGC	5 cut(s)	32, 35, 121, 819, 1394
TfiI	GAWTC	5 cut(s)	1084, 1381, 1426, 2195, 2333
Tru1I	TTAA	4 cut(s)	338, 434, 785, 1853
Tru9I	TTAA	4 cut(s)	338, 434, 785, 1853
TseFI	GTSAC	3 cut(s)	100, 292, 1631
TseI	GCWGC	6 cut(s)	378, 1132, 1268, 1558, 1991, 2477
Tsp45I	GTSAC	3 cut(s)	100, 292, 1631
Van91I	CCANNNNNTGG	1 cut(s)	2513
VpaK11BI	GGWCC	2 cut(s)	263, 2065
XagI	CCTNNNNNAGG	2 cut(s)	741, 1085
XapI	RAATTY	4 cut(s)	1480, 1778, 1898, 2282
XceI	RCATGY	3 cut(s)	407, 922, 2506
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1574, 2123
XmiI	GTMKAC	2 cut(s)	2034, 2549
XmnI	GAANNNNTTC	2 cut(s)	1219, 2562
XspI	CTAG	4 cut(s)	200, 1092, 1359, 1923
ZraI	GACGTC	1 cut(s)	2092
Zsp2I	ATGCAT	2 cut(s)	2266, 2530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.