Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Reverse (-)

28443491 .. 28451765

Gene Structure 8275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028814

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2637 bp

ATGAATTACGAGAAGAGGCTCAGAGCCGCGGCGGAGATCATACTCGCCGACGACGCACGCGCCGGAGACTCGCGTGTCAGCGCCGAAGAGCTCGGCGTGACGGCGACGCTGAAGCCGCACCAAGTCGAAGGCGTCTCGTGGCTCATACGGCGGTACAACCTCGGCGTCAACGTCGTTCTCGTGGATGTTTTACAGATGGGACTGGGAAAGACTCTGCAAGCTGTCGCTTTATTGAGCTATTTGAAGGTTCAAAAGATGTCACGTGGACCATTCTTGGTGTTGTGTCCTCTAAGTGTGACTGATGGTTGGGTCTCGGAGATGGAAAACTTTGCTCCAAAATTAAAATTTGTACGGTATGTTGGTGATAAAGAATATAGGCGCAGCTTACGCAGGACAATATATGACCATGTGAACGTGCATTCCTCGGTATCTGATATGTTGTCGTTACCTTTCGATGTCCTGTTGACAACATATGACATCGTGTTGGCCGATCAGGATTTCCTTTCTCAAATACCATGGAACTATGCAGTAATTGATGAAGCGCAAAGGCTTAAAAACCCTTCCAGTGTTCTGTACAATGTCCTAAGAGAGCGGTATCTCATTCCAAGAAGGTTACTGATGACTGGCACACCTATTCAAAACAATCTCACTGAACTGTGGGCTTTGATGTATTTTTGTATGCCTTCAGTCTTTCTGAAACTGGACGAGTTCCTTGTTACATTCAAGGAAGCTGGAGATCCTTCGTCAGGCTATAATACAGCTGAAGTCATAGAACAACTCAAAAGCTTAAAACGCATATTGGGGGCTTTCATGCTCCGGCGCACAAAATCTAAACTCATCGAGATTGGAGATCTATTCCTGCCACCCCTTACTGAGATAACAGTGCTGGCACCACTGGTCAGCTTGCAAAAGAAGGTGTACATGTCAATATTGAGGAAGGAGCTTCCTAAGCTACTTGCACTATCTTCTGGAGGTTCAAATCATCAATCCTTACAGAATATTGTGATACAGTTGCGAAAAGCATGTAGCCATCCTTATCTCTTCCCTGGTATTGAGCCAGAACCATATGAAGAGGGTGAACACCTGATTCAGGCTAGCGGTAAACTTATGATTTTGGATCGACTACTTTGGAAGCTGCATGAGCAGGGACGCCGTGTCCTTCTCTTTGCTCAGATGACACATACACTCGACGTTCTACAGGATTTTCTTGAGTTGCTAAAATATTCCTACGAGCGCCTTGATGGATCAATTCGGGCTGAGGAGCGGTTTGCTGCTATAAGAAGTTTCAGCAAGCAATCAGCAAAACAAAGTTTGAAGTCCCAAGCTGATCAAAATGATGCTTTTGTCTTCATGATCTCCACTAGAGCTGGGGGAGTTGGCTTGAATCTTGTTGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCCCAGGTTGATAAGCAAGCTTTGCAGCGGGCACACAGGATTGGTCAATTAAATTCTGTGCTGTCAATAAACCTAGTTACCGGACGTACAGTGGAGGAGGTTATCATGCAGAGAGCAGAAAGGAAGTTGCAGCTTAGCCATAATGTTATTGGGGATGATGTTATGGACGAGGAAGGTAAAGAGACAGCAGGAGTTGAACCTAGTGACCTGCGATCTATCATATTTGGGTTACATCTGTTTGATCCTGCTGAAGTCAACAATGGTGAGTGTGAGATTTCAGAATTGGATGCTTTGGCCGAGAAGGCGATTTCAGTGCGCAATAAAGAAACAGTGACCAAGGATGAGAGGAAATTTGAGGTCGGTCCAACGGATGTATTGAATGGACAAGATCTGGTTGCAGGAGGAAGTTCTACTTCTCTTGGTTTAAATACTAGTTTCGATGAAGATTCATATCTCTCCTGGGTTAAGAAATTCAAGGAGGTACCACAAGCAAGTAGCAATGAAAATTCAGATATGGGAAGCCGAAGAAACTTACCCGAGGAAAGGCGTCTAAAACTTGAGGCTGCAAAAAAAAGAGCAGAGGAAAAGAAGTTATCTAGGTGGGTAGACCTGGGCTACCAATCACTGTCTGTTGAGGAGCCTATCAGTCCTGTTGATAGGGACATCATGTCCGACTCAGGTTCTGTCCAGTTTGTTTATGGAGATTGTACACAACCATCAAAAGTTTGTCCCTCTAAGCCTACCATTATTTTGAGCTGTGTTGATGATTCGGGACAGTGGGGTCATGGAGGAATGTTTAATGCACTGGAGAGGCTGTCTGCAAGTGTCCCCGATGCATATCAACGAGCCTCTGAATTTAACGACCTGCATCTTGGTGATCTTCACCTTATAAGACTTGATGAGGATTCGAATGAACAGAAGATGGACAGCAATCCCCCTCGATGGGTGGCTTTAGCTGTTGTACAATCTTATAATCCCAGGCGTAAAGTACCCCGGAGCAAGATTTCTATTCCTGACTTGGAACGTTGCTTATCAAAGGCATCGTTTTCAGCCGCCCAAAGTTCTGCTTCAATCCACATGCCACGTATTGGGTATCAAGATGCATCGGATCGTGCAGAATGGTATGCGGTGGAACGTCTTCTACGAAAATATGCTTCTATCCATGGCATAAAGATTTATGTGTATTATTATAGACGATCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

879

Amino Acids

99.11

Weight (kDa)

6.31

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	40 - 347	5.4e-63	SNF2-related domain
Helicase_C	PF00271	368 - 492	2.3e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2321, 2403
AasI	GACNNNNNNGTC	2 cut(s)	74, 2211
Acc16I	TGCGCA	1 cut(s)	1748
Acc36I	ACCTGC	2 cut(s)	1647, 2304
Acc65I	GGTACC	1 cut(s)	1912
AccB1I	GGYRCC	2 cut(s)	889, 1912
AccB7I	CCANNNNNTGG	1 cut(s)	2519
AccBSI	CCGCTC	2 cut(s)	592, 1264
AccI	GTMKAC	1 cut(s)	2037
AccII	CGCG	3 cut(s)	29, 60, 73
AclI	AACGTT	1 cut(s)	2455
AclWI	GGATC	5 cut(s)	731, 1125, 1252, 1667, 2547
AcoI	YGGCCR	2 cut(s)	486, 1725
AcsI	RAATTY	6 cut(s)	344, 1483, 1781, 1901, 1936, 2285
AcuI	CTGAAG	4 cut(s)	131, 669, 783, 1701
AcvI	CACGTG	1 cut(s)	263
AcyI	GRCGYC	4 cut(s)	132, 165, 1150, 1978
AfaI	GTAC	9 cut(s)	155, 351, 575, 920, 1519, 1914, 2140, 2394, 2421
AfiI	CCNNNNNNNGG	6 cut(s)	746, 1090, 1974, 2373, 2374, 2519
AflIII	ACRYGT	1 cut(s)	921
AhdI	GACNNNNNGTC	2 cut(s)	1154, 2098
AhlI	ACTAGT	1 cut(s)	1862
AjnI	CCWGG	5 cut(s)	1045, 1434, 1889, 2040, 2408
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	4 cut(s)	60, 139, 316, 1607
AlwI	GGATC	5 cut(s)	731, 1125, 1252, 1667, 2547
AlwNI	CAGNNNCTG	1 cut(s)	2114
Ama87I	CYCGRG	1 cut(s)	1967
AoxI	GGCC	2 cut(s)	486, 1725
ApeKI	GCWGC	7 cut(s)	381, 1135, 1271, 1394, 1456, 1561, 1994
ApoI	RAATTY	6 cut(s)	344, 1483, 1781, 1901, 1936, 2285
Asp700I	GAANNNNTTC	1 cut(s)	2568
Asp718I	GGTACC	1 cut(s)	1912
AspLEI	GCGC	7 cut(s)	62, 83, 381, 544, 822, 1236, 1749
AspS9I	GGNCC	2 cut(s)	266, 1793
AsuC2I	CCSGG	1 cut(s)	2425
AsuHPI	GGTGA	5 cut(s)	374, 1088, 1706, 2306, 2318
AsuII	TTCGAA	1 cut(s)	2339
AsuNHI	GCTAGC	1 cut(s)	1094
AvaI	CYCGRG	1 cut(s)	1967
AvaII	GGWCC	2 cut(s)	266, 1793
BaeGI	GKGCMC	1 cut(s)	1465
BanI	GGYRCC	2 cut(s)	889, 1912
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	2 cut(s)	136, 179
BbrPI	CACGTG	1 cut(s)	263
BbsI	GAAGAC	2 cut(s)	1339, 2561
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	1257
BbvI	GCAGC	7 cut(s)	393, 1122, 1258, 1381, 1468, 1573, 1981
BccI	CCATC	8 cut(s)	190, 296, 313, 1038, 1235, 2155, 2347, 2367
BceAI	ACGGC	3 cut(s)	117, 164, 1137
BcgI	CGANNNNNNTGC	2 cut(s)	1726, 1760
BciT130I	CCWGG	5 cut(s)	1047, 1436, 1891, 2042, 2410
BclI	TGATCA	1 cut(s)	1327
BcnI	CCSGG	1 cut(s)	2425
BcoDI	GTCTC	4 cut(s)	60, 139, 316, 1607
BcuI	ACTAGT	1 cut(s)	1862
BfaI	CTAG	6 cut(s)	1095, 1362, 1505, 1632, 1863, 2028
BfmI	CTRYAG	1 cut(s)	1196
BfoI	RGCGCY	2 cut(s)	84, 1237
BfuAI	ACCTGC	2 cut(s)	1647, 2304
BglI	GCCNNNNNGGC	1 cut(s)	1733
BglII	AGATCT	2 cut(s)	850, 1819
BlpI	GCTNAGC	1 cut(s)	1565
Bme1390I	CCNGG	6 cut(s)	1047, 1436, 1891, 2042, 2410, 2425
Bme18I	GGWCC	2 cut(s)	266, 1793
BmeRI	GACNNNNNGTC	2 cut(s)	1154, 2098
BmeT110I	CYCGRG	1 cut(s)	1967
BmgT120I	GGNCC	2 cut(s)	266, 1793
BmiI	GGNNCC	3 cut(s)	891, 1914, 2070
BmrFI	CCNGG	6 cut(s)	1047, 1436, 1891, 2042, 2410, 2425
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	7 cut(s)	1327, 1708, 2254, 2308, 2480, 2521, 2543
BmtI	GCTAGC	1 cut(s)	1098
BmuI	ACTGGG	1 cut(s)	212
BpiI	GAAGAC	2 cut(s)	1339, 2561
BpmI	CTGGAG	3 cut(s)	753, 990, 2258
Bpu10I	CCTNAGC	2 cut(s)	948, 1257
Bpu1102I	GCTNAGC	1 cut(s)	1565
Bpu14I	TTCGAA	1 cut(s)	2339
BpuEI	CTTGAG	2 cut(s)	1229, 2009
BpuMI	CCSGG	1 cut(s)	2425
BsaAI	YACGTR	2 cut(s)	263, 2516
BsaBI	GATNNNNATC	3 cut(s)	1428, 1881, 2268
BsaHI	GRCGYC	4 cut(s)	132, 165, 1150, 1978
BsaI	GGTCTC	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	1511
BsaXI	ACNNNNNCTCC	2 cut(s)	2231, 2261
Bsc4I	CCNNNNNNNGG	6 cut(s)	746, 1090, 1974, 2373, 2374, 2519
Bse1I	ACTGG	7 cut(s)	207, 564, 628, 705, 900, 2119, 2241
Bse3DI	GCAATG	1 cut(s)	1936
Bse8I	GATNNNNATC	3 cut(s)	1428, 1881, 2268
BseBI	CCWGG	5 cut(s)	1047, 1436, 1891, 2042, 2410
BseGI	GGATG	6 cut(s)	190, 1030, 1591, 1723, 1777, 1807
BseJI	GATNNNNATC	3 cut(s)	1428, 1881, 2268
BseLI	CCNNNNNNNGG	6 cut(s)	746, 1090, 1974, 2373, 2374, 2519
BseMI	GCAATG	1 cut(s)	1936
BseMII	CTCAG	5 cut(s)	34, 864, 1184, 1248, 2121
BseNI	ACTGG	7 cut(s)	207, 564, 628, 705, 900, 2119, 2241
BseRI	GAGGAG	3 cut(s)	1274, 1541, 2081
BseSI	GKGCMC	1 cut(s)	1465
BseXI	GCAGC	7 cut(s)	393, 1122, 1258, 1381, 1468, 1573, 1981
BseYI	CCCAGC	1 cut(s)	1367
BsgI	GTGCAG	1 cut(s)	2565
Bsh1236I	CGCG	3 cut(s)	29, 60, 73
BshFI	GGCC	2 cut(s)	488, 1727
BshNI	GGYRCC	2 cut(s)	889, 1912
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	1967
BsiSI	CCGG	4 cut(s)	63, 817, 1512, 2425
BslFI	GGGAC	7 cut(s)	213, 1161, 1303, 2105, 2145, 2217, 2243
BslI	CCNNNNNNNGG	6 cut(s)	746, 1090, 1974, 2373, 2374, 2519
BsmAI	GTCTC	4 cut(s)	60, 139, 316, 1607
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	7 cut(s)	213, 1161, 1303, 2105, 2145, 2217, 2243
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	488, 1727
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	1967
Bsp119I	TTCGAA	1 cut(s)	2339
Bsp1286I	GDGCHC	2 cut(s)	93, 1465
Bsp1407I	TGTACA	4 cut(s)	573, 918, 2138, 2392
Bsp1720I	GCTNAGC	1 cut(s)	1565
Bsp19I	CCATGG	2 cut(s)	515, 2593
BspANI	GGCC	2 cut(s)	488, 1727
BspCNI	CTCAG	5 cut(s)	33, 865, 1183, 1249, 2120
BspFNI	CGCG	3 cut(s)	29, 60, 73
BspHI	TCATGA	1 cut(s)	1350
BspLI	GGNNCC	3 cut(s)	891, 1914, 2070
BspMI	ACCTGC	2 cut(s)	1647, 2304
BspOI	GCTAGC	1 cut(s)	1098
BspPI	GGATC	5 cut(s)	731, 1125, 1252, 1667, 2547
BspQI	GCTCTTC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	2339
BspT107I	GGYRCC	2 cut(s)	889, 1912
BspTNI	GGTCTC	1 cut(s)	316
BsrBI	CCGCTC	2 cut(s)	592, 1264
BsrDI	GCAATG	1 cut(s)	1936
BsrGI	TGTACA	4 cut(s)	573, 918, 2138, 2392
BsrI	ACTGG	7 cut(s)	207, 564, 628, 705, 900, 2119, 2241
BssNI	GRCGYC	4 cut(s)	132, 165, 1150, 1978
BssSI	CACGAG	2 cut(s)	136, 179
BssT1I	CCWWGG	3 cut(s)	515, 1767, 2593
Bst2BI	CACGAG	2 cut(s)	136, 179
Bst2UI	CCWGG	5 cut(s)	1047, 1436, 1891, 2042, 2410
Bst4CI	ACNGT	9 cut(s)	354, 657, 883, 1011, 1405, 1522, 1762, 2058, 2208
Bst6I	CTCTTC	4 cut(s)	8, 81, 1046, 1065
BstACI	GRCGYC	4 cut(s)	132, 165, 1150, 1978
BstAPI	GCANNNNNTGC	1 cut(s)	1453
BstAUI	TGTACA	4 cut(s)	573, 918, 2138, 2392
BstBAI	YACGTR	2 cut(s)	263, 2516
BstBI	TTCGAA	1 cut(s)	2339
BstC8I	GCNNGC	8 cut(s)	58, 219, 888, 905, 1096, 1292, 1449, 1461
BstDSI	CCRYGG	3 cut(s)	27, 515, 2593
BstENI	CCTNNNNNAGG	2 cut(s)	744, 1088
BstF5I	GGATG	6 cut(s)	190, 1030, 1591, 1723, 1777, 1807
BstFNI	CGCG	3 cut(s)	29, 60, 73
BstH2I	RGCGCY	2 cut(s)	84, 1237
BstHHI	GCGC	7 cut(s)	62, 83, 381, 544, 822, 1236, 1749
BstMAI	GTCTC	4 cut(s)	60, 139, 316, 1607
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 115, 148, 387, 792, 949, 1141, 1453, 1733
BstNI	CCWGG	5 cut(s)	1047, 1436, 1891, 2042, 2410
BstNSI	RCATGY	3 cut(s)	925, 1026, 2512
BstSCI	CCNGG	6 cut(s)	1045, 1434, 1889, 2040, 2408, 2423
BstSFI	CTRYAG	1 cut(s)	1196
BstSLI	GKGCMC	1 cut(s)	1465
BstUI	CGCG	3 cut(s)	29, 60, 73
BstV1I	GCAGC	7 cut(s)	393, 1122, 1258, 1381, 1468, 1573, 1981
BstV2I	GAAGAC	2 cut(s)	1339, 2561
BstX2I	RGATCY	3 cut(s)	736, 850, 1819
BstYI	RGATCY	3 cut(s)	736, 850, 1819
BsuRI	GGCC	2 cut(s)	488, 1727
BtgI	CCRYGG	3 cut(s)	27, 515, 2593
BtsCI	GGATG	6 cut(s)	190, 1030, 1591, 1723, 1777, 1807
BveI	ACCTGC	2 cut(s)	1647, 2304
Cac8I	GCNNGC	8 cut(s)	58, 219, 888, 905, 1096, 1292, 1449, 1461
CaiI	CAGNNNCTG	1 cut(s)	2114
CciI	TCATGA	1 cut(s)	1350
CfoI	GCGC	7 cut(s)	62, 83, 381, 544, 822, 1236, 1749
Cfr13I	GGNCC	2 cut(s)	266, 1793
Cfr42I	CCGCGG	1 cut(s)	30
CseI	GACGC	6 cut(s)	62, 115, 121, 154, 1158, 1967
Csp6I	GTAC	9 cut(s)	154, 350, 574, 919, 1518, 1913, 2139, 2393, 2420
CviQI	GTAC	9 cut(s)	154, 350, 574, 919, 1518, 1913, 2139, 2393, 2420
DraI	TTTAAA	1 cut(s)	1857
DrdI	GACNNNNNNGTC	2 cut(s)	74, 2211
DriI	GACNNNNNGTC	2 cut(s)	1154, 2098
DseDI	GACNNNNNNGTC	2 cut(s)	74, 2211
EaeI	YGGCCR	2 cut(s)	486, 1725
Eam1104I	CTCTTC	4 cut(s)	8, 81, 1046, 1065
Eam1105I	GACNNNNNGTC	2 cut(s)	1154, 2098
EarI	CTCTTC	4 cut(s)	8, 81, 1046, 1065
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	3 cut(s)	515, 1767, 2593
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	266, 1793
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	4 cut(s)	131, 669, 783, 1701
Eco72I	CACGTG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	1967
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	2 cut(s)	744, 1088
EcoRII	CCWGG	5 cut(s)	1045, 1434, 1889, 2040, 2408
EcoT14I	CCWWGG	3 cut(s)	515, 1767, 2593
EcoT22I	ATGCAT	2 cut(s)	2269, 2536
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	3 cut(s)	515, 1767, 2593
Esp3I	CGTCTC	1 cut(s)	139
FalI	AAGNNNNNCTT	4 cut(s)	1828, 1860, 2482, 2514
FaqI	GGGAC	7 cut(s)	213, 1161, 1303, 2105, 2145, 2217, 2243
FauI	CCCGC	1 cut(s)	1452
FauNDI	CATATG	2 cut(s)	472, 1066
FbaI	TGATCA	1 cut(s)	1327
FblI	GTMKAC	1 cut(s)	2037
FokI	GGATG	6 cut(s)	197, 1017, 1598, 1730, 1784, 1814
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	6 cut(s)	1095, 1362, 1505, 1632, 1863, 2028
FspI	TGCGCA	1 cut(s)	1748
GlaI	GCGC	7 cut(s)	61, 82, 380, 543, 821, 1235, 1748
GsaI	CCCAGC	1 cut(s)	1371
GsuI	CTGGAG	3 cut(s)	753, 990, 2258
HaeII	RGCGCY	2 cut(s)	84, 1237
HaeIII	GGCC	2 cut(s)	488, 1727
HapII	CCGG	4 cut(s)	63, 817, 1512, 2425
HgaI	GACGC	6 cut(s)	62, 115, 121, 154, 1158, 1967
HhaI	GCGC	7 cut(s)	62, 83, 381, 544, 822, 1236, 1749
Hin1I	GRCGYC	4 cut(s)	132, 165, 1150, 1978
Hin6I	GCGC	7 cut(s)	60, 81, 379, 542, 820, 1234, 1747
HinP1I	GCGC	7 cut(s)	60, 81, 379, 542, 820, 1234, 1747
HincII	GTYRAC	3 cut(s)	169, 465, 1687
HindII	GTYRAC	3 cut(s)	169, 465, 1687
HindIII	AAGCTT	2 cut(s)	784, 1449
HinfI	GANTC	9 cut(s)	68, 211, 1087, 1384, 1429, 1877, 2105, 2198, 2336
HpaII	CCGG	4 cut(s)	63, 817, 1512, 2425
HphI	GGTGA	5 cut(s)	374, 1088, 1706, 2306, 2318
Hpy188III	TCNNGA	9 cut(s)	494, 841, 969, 1208, 1351, 2202, 2444, 2528, 2634
Hpy99I	CGWCG	5 cut(s)	53, 56, 109, 176, 1193
HpyCH4III	ACNGT	9 cut(s)	354, 657, 883, 1011, 1405, 1522, 1762, 2058, 2208
HpyCH4IV	ACGT	8 cut(s)	171, 262, 414, 1191, 1516, 2455, 2515, 2566
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 115, 148, 387, 792, 949, 1141, 1453, 1733
HpySE526I	ACGT	8 cut(s)	171, 262, 414, 1191, 1516, 2455, 2515, 2566
Hsp92I	GRCGYC	4 cut(s)	132, 165, 1150, 1978
HspAI	GCGC	7 cut(s)	60, 81, 379, 542, 820, 1234, 1747
KpnI	GGTACC	1 cut(s)	1916
Ksp22I	TGATCA	1 cut(s)	1327
KspI	CCGCGG	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	6 cut(s)	337, 819, 940, 1261, 2068, 2427
Lsp1109I	GCAGC	7 cut(s)	393, 1122, 1258, 1381, 1468, 1573, 1981
LweI	GCATC	7 cut(s)	1327, 1708, 2254, 2308, 2480, 2521, 2543
MaeI	CTAG	6 cut(s)	1095, 1362, 1505, 1632, 1863, 2028
MaeII	ACGT	8 cut(s)	171, 262, 414, 1191, 1516, 2455, 2515, 2566
MbiI	CCGCTC	2 cut(s)	592, 1264
MflI	RGATCY	3 cut(s)	736, 850, 1819
MhlI	GDGCHC	2 cut(s)	93, 1465
MlyI	GAGTC	3 cut(s)	62, 205, 2099
MmeI	TCCRAC	2 cut(s)	1820, 2127
Mph1103I	ATGCAT	2 cut(s)	2269, 2536
MroXI	GAANNNNTTC	1 cut(s)	2568
MseI	TTAA	8 cut(s)	341, 552, 788, 1481, 1856, 1896, 2229, 2289
MslI	CAYNNNNRTG	1 cut(s)	2304
MspA1I	CMGCKG	3 cut(s)	29, 761, 1459
MspI	CCGG	4 cut(s)	63, 817, 1512, 2425
MspR9I	CCNGG	6 cut(s)	1047, 1436, 1891, 2042, 2410, 2425
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	5 cut(s)	1047, 1436, 1891, 2042, 2410
MvnI	CGCG	3 cut(s)	29, 60, 73
MwoI	GCNNNNNNNGC	9 cut(s)	53, 115, 148, 387, 792, 949, 1141, 1453, 1733
NciI	CCSGG	1 cut(s)	2425
NcoI	CCATGG	2 cut(s)	515, 2593
NdeI	CATATG	2 cut(s)	472, 1066
NheI	GCTAGC	1 cut(s)	1094
NlaIV	GGNNCC	3 cut(s)	891, 1914, 2070
NmeAIII	GCCGAG	3 cut(s)	72, 141, 1753
NmuCI	GTSAC	5 cut(s)	97, 258, 295, 1634, 1762
NsbI	TGCGCA	1 cut(s)	1748
NsiI	ATGCAT	2 cut(s)	2269, 2536
NspI	RCATGY	3 cut(s)	925, 1026, 2512
NspV	TTCGAA	1 cut(s)	2339
PagI	TCATGA	1 cut(s)	1350
PciI	ACATGT	1 cut(s)	921
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	4 cut(s)	168, 177, 486, 2572
PctI	GAATGC	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	2568
PfeI	GAWTC	6 cut(s)	1087, 1384, 1429, 1877, 2198, 2336
PflMI	CCANNNNNTGG	1 cut(s)	2519
PleI	GAGTC	3 cut(s)	62, 205, 2099
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
PpsI	GAGTC	3 cut(s)	62, 205, 2099
Ppu21I	YACGTR	2 cut(s)	263, 2516
PscI	ACATGT	1 cut(s)	921
PsiI	TTATAA	2 cut(s)	2321, 2403
Psp124BI	GAGCTC	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	2455
Psp6I	CCWGG	5 cut(s)	1045, 1434, 1889, 2040, 2408
PspCI	CACGTG	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	1367
PspGI	CCWGG	5 cut(s)	1045, 1434, 1889, 2040, 2408
PspN4I	GGNNCC	3 cut(s)	891, 1914, 2070
PspPI	GGNCC	2 cut(s)	266, 1793
PsrI	GAACNNNNNNTAC	2 cut(s)	2556, 2588
PstNI	CAGNNNCTG	1 cut(s)	2114
PsuI	RGATCY	3 cut(s)	736, 850, 1819
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	9 cut(s)	155, 351, 575, 920, 1519, 1914, 2140, 2394, 2421
RsaNI	GTAC	9 cut(s)	154, 350, 574, 919, 1518, 1913, 2139, 2393, 2420
RseI	CAYNNNNRTG	1 cut(s)	2304
SacI	GAGCTC	1 cut(s)	93
SacII	CCGCGG	1 cut(s)	30
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	8 cut(s)	341, 552, 788, 1481, 1856, 1896, 2229, 2289
Sau96I	GGNCC	2 cut(s)	266, 1793
SchI	GAGTC	3 cut(s)	62, 205, 2099
ScrFI	CCNGG	6 cut(s)	1047, 1436, 1891, 2042, 2410, 2425
SduI	GDGCHC	2 cut(s)	93, 1465
SfaNI	GCATC	7 cut(s)	1327, 1708, 2254, 2308, 2480, 2521, 2543
SfcI	CTRYAG	1 cut(s)	1196
Sfr303I	CCGCGG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	2339
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	2 cut(s)	266, 1793
SmiMI	CAYNNNNRTG	1 cut(s)	2304
SmlI	CTYRAG	2 cut(s)	1208, 1988
SmoI	CTYRAG	2 cut(s)	1208, 1988
SpeI	ACTAGT	1 cut(s)	1862
SspI	AATATT	3 cut(s)	930, 1000, 1223
SspMI	CTAG	6 cut(s)	1095, 1362, 1505, 1632, 1863, 2028
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	6 cut(s)	1045, 1434, 1889, 2040, 2408, 2423
StyI	CCWWGG	3 cut(s)	515, 1767, 2593
TaaI	ACNGT	9 cut(s)	354, 657, 883, 1011, 1405, 1522, 1762, 2058, 2208
TaiI	ACGT	8 cut(s)	174, 265, 417, 1194, 1519, 2458, 2518, 2569
TaqI	TCGA	8 cut(s)	126, 453, 840, 1120, 1188, 1869, 2339, 2371
TaqII	GACCGA	1 cut(s)	1781
TatI	WGTACW	4 cut(s)	573, 918, 2138, 2392
TauI	GCSGC	4 cut(s)	29, 32, 118, 2486
TfiI	GAWTC	6 cut(s)	1087, 1384, 1429, 1877, 2198, 2336
Tru1I	TTAA	8 cut(s)	341, 552, 788, 1481, 1856, 1896, 2229, 2289
Tru9I	TTAA	8 cut(s)	341, 552, 788, 1481, 1856, 1896, 2229, 2289
TseFI	GTSAC	5 cut(s)	97, 258, 295, 1634, 1762
TseI	GCWGC	7 cut(s)	381, 1135, 1271, 1394, 1456, 1561, 1994
Tsp45I	GTSAC	5 cut(s)	97, 258, 295, 1634, 1762
TspDTI	ATGAA	9 cut(s)	17, 552, 799, 1083, 1339, 1869, 1887, 1947, 2358
TspGWI	ACGGA	1 cut(s)	1814
Van91I	CCANNNNNTGG	1 cut(s)	2519
VpaK11BI	GGWCC	2 cut(s)	266, 1793
XagI	CCTNNNNNAGG	2 cut(s)	744, 1088
XapI	RAATTY	6 cut(s)	344, 1483, 1781, 1901, 1936, 2285
XceI	RCATGY	3 cut(s)	925, 1026, 2512
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1577, 2126
XmiI	GTMKAC	1 cut(s)	2037
XmnI	GAANNNNTTC	1 cut(s)	2568
XspI	CTAG	6 cut(s)	1095, 1362, 1505, 1632, 1863, 2028
Zsp2I	ATGCAT	2 cut(s)	2269, 2536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.