Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Forward (+)

24433767 .. 24434228

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0178000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATGCAACTTTCATGTGGAAAGGAAGAATGTCTGCATACAAAAGTACGTACTTTGGGACTTGTCAAGAGAATTGATCTCTCAAGCAGCAGATTAACTGGGGATCGATATCAATTCACTGATCTTGTTGGATTGGTTTCTTTGAACCTTTCAAGAAACCATTTAACAGGACAAATCACTCCAGATATTGGAAAGTTGCAGTCATTAGATTCTCTTGATATTTCCAGAAACCAGATAGATGGTGCAATTCCAACAAGCCTTGCTCGGATTGATCGACTTGCTTACCTGGATTTGTCATATAACAGATTGTCTGGCGAAATTCCAACCGGTACACAGCTCAAAGGTTTTGATGCCTCCGTATTTGTGGAAACCCTCAGCTGTGTGGACCTCCACTTCAAAAGATGTGTGCTCCGGAACGACAAAATGTGTCGCATGACAAAGAAGATAGGGATGAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

153

Amino Acids

17.14

Weight (kDa)

9.25

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	65 - 103	1.4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccIII	TCCGGA	1 cut(s)	411
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	318
AfaI	GTAC	3 cut(s)	48, 52, 331
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	145, 153, 397
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	337, 378
AluI	AGCT	2 cut(s)	337, 378
Alw21I	GWGCWC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	111
Aor13HI	TCCGGA	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	318
AsiGI	ACCGGT	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	287
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	287
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	67
Bsa29I	ATCGAT	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	108
BsaWI	WCCGGW	2 cut(s)	326, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	287
BseCI	ATCGAT	1 cut(s)	106
BseGI	GGATG	1 cut(s)	456
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	99
BshTI	ACCGGT	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	327, 412
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp13I	TCCGGA	1 cut(s)	411
Bsp143I	GATC	5 cut(s)	76, 103, 121, 271, 455
BspCNI	CTCAG	1 cut(s)	387
BspDI	ATCGAT	1 cut(s)	106
BspEI	TCCGGA	1 cut(s)	411
BspPI	GGATC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	5 cut(s)	76, 103, 121, 271, 455
Bst2UI	CCWGG	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	456
BstKTI	GATC	5 cut(s)	79, 106, 124, 274, 458
BstMBI	GATC	5 cut(s)	76, 103, 121, 271, 455
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstSNI	TACGTA	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	239
Bsu15I	ATCGAT	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	106
Csp6I	GTAC	3 cut(s)	47, 51, 330
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	2 cut(s)	15, 433
CviJI	RGCY	3 cut(s)	258, 337, 378
CviKI_1	RGCY	3 cut(s)	258, 337, 378
CviQI	GTAC	3 cut(s)	47, 51, 330
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	5 cut(s)	78, 105, 123, 273, 457
DpnII	GATC	5 cut(s)	76, 103, 121, 271, 455
Eco105I	TACGTA	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	110
FaeI	CATG	2 cut(s)	18, 436
FaiI	YATR	6 cut(s)	16, 39, 298, 300, 434, 460
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	2 cut(s)	14, 432
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	165
HapII	CCGG	2 cut(s)	327, 412
Hin1II	CATG	2 cut(s)	18, 436
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	2 cut(s)	327, 412
Hpy166II	GTNNAC	2 cut(s)	332, 385
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	6 cut(s)	67, 153, 182, 215, 225, 412
Hpy8I	GTNNAC	2 cut(s)	332, 385
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	4 cut(s)	7, 37, 199, 245
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	18, 436
Kpn2I	TCCGGA	1 cut(s)	411
Kzo9I	GATC	5 cut(s)	76, 103, 121, 271, 455
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	1 cut(s)	340
MaeII	ACGT	1 cut(s)	49
MalI	GATC	5 cut(s)	78, 105, 123, 273, 457
MboI	GATC	5 cut(s)	76, 103, 121, 271, 455
MboII	GAAGA	2 cut(s)	38, 454
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	4 cut(s)	72, 113, 246, 318
MmeI	TCCRAC	3 cut(s)	109, 275, 347
MnlI	CCTC	3 cut(s)	364, 383, 398
MroI	TCCGGA	1 cut(s)	411
MseI	TTAA	2 cut(s)	95, 164
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	2 cut(s)	327, 412
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
NdeII	GATC	5 cut(s)	76, 103, 121, 271, 455
NlaIII	CATG	2 cut(s)	18, 436
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	209
PflMI	CCANNNNNTGG	1 cut(s)	188
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	378
RsaI	GTAC	3 cut(s)	48, 52, 331
RsaNI	GTAC	3 cut(s)	47, 51, 330
SaqAI	TTAA	2 cut(s)	95, 164
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	5 cut(s)	76, 103, 121, 271, 455
Sau96I	GGNCC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	7 cut(s)	52, 150, 288, 339, 346, 380, 390
SfaNI	GCATC	1 cut(s)	340
SinI	GGWCC	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
SnaBI	TACGTA	1 cut(s)	50
Sse9I	AATT	4 cut(s)	72, 113, 246, 318
StyD4I	CCNGG	1 cut(s)	285
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	106, 274
TasI	AATT	4 cut(s)	72, 113, 246, 318
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	95, 164
Tru9I	TTAA	2 cut(s)	95, 164
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.