Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Forward (+)

10862434 .. 10869765

Gene Structure 7332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1098400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGAATTACGAGCAGAGGCTCAAAGCCGCGGCGAATATCATACTCACTAATGACGCACGCGCCGGAGACGCGCGTGTCGACTCTGAAGAGCTCGGCGTCAAGGCTAAACTGAAGCCTCACCAGGTCGAAGGCGTGTCGTGGCTCATACGCCGATACAATCTAGGCGTCAACGTCATTCTCGGAGACGAGATGGGACTGGGAAAGACGTTACAAGCTGTTTCATTACTGAGCTATTTGAAGGTTCAGAAGATGTCACCTGGACCATTTTTGGTATTGTGTCCTTTGAGTGTGACGGACGGTTGGGTCACAGAGATGGACACATTTGCTCCAAAGCTAAAGATTCTTCGGTATATTGGTGATAAAGAAAATCGGCGCATTCTACGCAGGACAATCTACAAGCACGTAAATGAGCAGACCTCCTCAACTGATGTATTGTCATTGCCTTTTGATGTCCTGTTGACAACATATGACATAGCCTTGGCAGATCAGGATTTTCTTTCTCAGATGCCCTGGAGCTATGCAGTAATTGATGAAGCGCAAAGGCTCAAAAACCCTTCCAGTGTTTTGTACAATGTCCTAAGAGAGCGCTATCTCATACCAAGACGGTTACTGATGACTGGCACACCTATCCAAAACAATCTCACTGAACTTTGGGCTTTGATGCATTTTTGTATGCCTTCAGTCTTTGGGAAGCTAGACGAGTTCCTTGCAACATTCAAGGAAGCTGGAGATCCCTCATCAGGCCATGATACAACCAAAGTCAAGGAACAACTCAAAAGCTTAAGAAGTATCTTGGGAGCTTTCATGCTCCGCCGTACAAAATTTAAACTTATTGAGTCTGGAGATTTATCCCTGCCACCGCTTACTGAGATAACAGTGCTGGCACCATTGGTCAGCTTGCAAAAGAAGGTGTATATGTCAATATTGAGAAAGGAGCTTCCGAAGCTACTTGCACTCTCTTCCGGAGGTTCAAATCATCAGTCCTTACAGAATATTTATGTTGATCAGGTAATACAGCTGCGAAAAGTATGTAGCCATCCGTATCTCTTCCCTGGTATTGAGCCTGAACCGTATGAAGAGGGCGAACACCTGGTTCAGGCTAGTGGTAAGCTTATAATTTTGGATCAACTACTTCAAAAGCTACATGAGTATGGACACCGTGTGCTTCTCTTTGCACAGATGACGCATACCCTTGATATTCTGCAGGATTTTCTGGAGTTACGAAAGTATTCCTACGAGCGGCTTGATGGATCAATTCGTGCTGAGGAGCGCTTTGCTGCCATAAGAAGTTTCAGCACGCAATTAACAAAAAAAAGTTTGAAGTCTCAAGCTGATCAAAATGGTGCTTTTGTCTTCATGATCTCTACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCCGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCCCAGGTTGACAAGCAAGCTCTGCAGCGGGCACACAGGATTGGTCAGATGAATAACGTACTGTCAATAAACCTAGTTACAGGACGTATGGTGGAGGAGGTTATCATGCGGAGAGCAGAGAGGAAATTGCAGCTAAGCCATAATGTTGTTGGGGACGATGTTATGGACCAGGATGGTAAAGAAACAAGTGGAGTTGAACCTAGTGACTTACGATCCATCATATTTGGGTTACATCTCTTCGATCCTGATGAAGTTAATAATGGTGTGCTTCAGATGTCAGAACTGAATACTATGGCTGAGAAGGTACTTTCAGTGCGGAACAAACAAGTAGCTACCGAGGATGAGAGGAAATTTGAGCTTAATCCAGCAGATGTTTTGAATGGAAATGATCTTGTTGTAGGAGAAGGTTCCACTTCTCTTGGTTTCAATTTGGGCTTTGATGAATCTTTATATCTCTCTTGGGTTGAAAAATTCAAGGAGGTGTCACAAGAAAATATGGATACGGGAAGCAGAAGAAATCTACTCGAGGAAAAACGTCTAAAACTTGAGGCTGCAAAGAAGAAAGCAGAGGAGAAGAAGTTGTCTAAGTGGGAAGAGCTTGGATACCATTCACTGTCTGTTGAAGACCCTATCAGCCCTGTGGATAGTGACATGATGTCTGATTCAGGTTCTGTCCAATTTGTTTATGGGGATTGTACACAACCATCAAAAGTTTGCCCCTCTGAGCCTGCCATTGTTTTCAGCTGTGTTGATGATTCTGGACACTGGGGTCGTGGAGGAATGTTTGATGCACTGTCCAAGCTATCTGCAAGTATCCCTGATGCGTATCAACGAGCTTCCGAATTTGGTGACCTGCATCTTGGTGATCTTCACCTTATAAGAGTTTATGAGGATTCAGATGAGCCTGAGATGGACTCGAATCCCCCTCAATGGGTGGCTTTGGCTGTTGTGCAATCTTATAATCCTAGGCGTAAAGTACCCCGCAGCAAGATTTCTATCCCTGACTTGGAAAGTTGCTTATCGAAAGCATCGTTTTCAGCTGCTCAAAGTTCTGCTTCAATCCACATGCCTCGTATTGGGTATCAAGATGCATCAGATCGTGCAGAATGGTACTCCGTCGAACGCCTTCTACGAAAATATGCTTCTATTTATGGCATAAAGATATACGTGTATTATTTTAAGCGGTCCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

877

Amino Acids

98.79

Weight (kDa)

6.0

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	40 - 349	3.7e-67	SNF2-related domain
HDA2-3	PF11496	295 - 428	7.8e-07	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	370 - 494	6.6e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1115, 2315, 2397
AasI	GACNNNNNNGTC	3 cut(s)	74, 302, 2205
Acc36I	ACCTGC	1 cut(s)	2298
AccB1I	GGYRCC	1 cut(s)	883
AccBSI	CCGCTC	1 cut(s)	1240
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	4 cut(s)	29, 60, 71, 73
AccIII	TCCGGA	1 cut(s)	962
AclWI	GGATC	5 cut(s)	725, 1131, 1258, 1644, 1673
AcoI	YGGCCR	1 cut(s)	1398
AcsI	RAATTY	4 cut(s)	821, 1787, 1907, 2279
AcuI	CTGAAG	4 cut(s)	105, 131, 663, 1691
AcyI	GRCGYC	2 cut(s)	96, 165
AdeI	CACNNNGTG	1 cut(s)	1162
AfaI	GTAC	7 cut(s)	569, 817, 1497, 1743, 2134, 2415, 2549
AfeI	AGCGCT	2 cut(s)	587, 1271
AfiI	CCNNNNNNNGG	7 cut(s)	740, 1096, 1239, 2367, 2368, 2443, 2513
AflII	CTTAAG	1 cut(s)	781
AflIII	ACRYGT	1 cut(s)	2604
AhdI	GACNNNNNGTC	1 cut(s)	2092
AjnI	CCWGG	7 cut(s)	120, 256, 509, 1051, 1089, 1440, 1605
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	3 cut(s)	60, 177, 1329
AlwI	GGATC	5 cut(s)	725, 1131, 1258, 1644, 1673
AlwNI	CAGNNNCTG	1 cut(s)	2108
Ama87I	CYCGRG	1 cut(s)	1961
Aor13HI	TCCGGA	1 cut(s)	962
Aor51HI	AGCGCT	2 cut(s)	587, 1271
AoxI	GGCC	2 cut(s)	742, 1398
ApeKI	GCWGC	7 cut(s)	1018, 1277, 1462, 1567, 1988, 2421, 2477
ApoI	RAATTY	4 cut(s)	821, 1787, 1907, 2279
ArsI	GACNNNNNNTTYG	2 cut(s)	965, 997
Asp700I	GAANNNNTTC	2 cut(s)	1228, 2562
AspA2I	CCTAGG	1 cut(s)	2402
AspLEI	GCGC	6 cut(s)	62, 73, 375, 538, 588, 1272
AspS9I	GGNCC	3 cut(s)	260, 1603, 2622
AsuHPI	GGTGA	6 cut(s)	110, 246, 368, 2297, 2300, 2312
AvaI	CYCGRG	1 cut(s)	1961
AvaII	GGWCC	3 cut(s)	260, 1603, 2622
AvrII	CCTAGG	1 cut(s)	2402
BaeGI	GKGCMC	1 cut(s)	1471
BanI	GGYRCC	1 cut(s)	883
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	2 cut(s)	1345, 2067
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	1263
BbvI	GCAGC	7 cut(s)	1005, 1264, 1474, 1579, 1975, 2433, 2464
BccI	CCATC	8 cut(s)	184, 307, 1044, 1241, 1604, 1661, 2149, 2341
BceAI	ACGGC	1 cut(s)	798
BcgI	CGANNNNNNTGC	2 cut(s)	689, 723
BciT130I	CCWGG	7 cut(s)	122, 258, 511, 1053, 1091, 1442, 1607
BciVI	GTATCC	3 cut(s)	1930, 2033, 2261
BclI	TGATCA	2 cut(s)	1003, 1333
BcoDI	GTCTC	3 cut(s)	60, 177, 1329
BfaI	CTAG	6 cut(s)	161, 695, 1101, 1511, 1638, 2403
BfmI	CTRYAG	2 cut(s)	1202, 1460
BfoI	RGCGCY	2 cut(s)	589, 1273
BfrI	CTTAAG	1 cut(s)	781
BfuAI	ACCTGC	1 cut(s)	2298
BfuI	GTATCC	3 cut(s)	1930, 2033, 2261
BlnI	CCTAGG	1 cut(s)	2402
BlpI	GCTNAGC	1 cut(s)	1571
Bme1390I	CCNGG	7 cut(s)	122, 258, 511, 1053, 1091, 1442, 1607
Bme18I	GGWCC	3 cut(s)	260, 1603, 2622
BmeRI	GACNNNNNGTC	1 cut(s)	2092
BmeT110I	CYCGRG	1 cut(s)	1961
BmgT120I	GGNCC	3 cut(s)	260, 1603, 2622
BmiI	GGNNCC	2 cut(s)	885, 1846
BmrFI	CCNGG	7 cut(s)	122, 258, 511, 1053, 1091, 1442, 1607
BmrI	ACTGGG	2 cut(s)	206, 2212
BmsI	GCATC	8 cut(s)	495, 651, 2215, 2248, 2302, 2474, 2515, 2537
BmuI	ACTGGG	2 cut(s)	206, 2212
BpiI	GAAGAC	2 cut(s)	1345, 2067
BplI	GAGNNNNNCTC	4 cut(s)	401, 433, 2336, 2368
BpmI	CTGGAG	4 cut(s)	532, 747, 861, 1235
Bpu10I	CCTNAGC	1 cut(s)	1263
Bpu1102I	GCTNAGC	1 cut(s)	1571
BpuEI	CTTGAG	2 cut(s)	1311, 2003
BsaAI	YACGTR	2 cut(s)	403, 2605
BsaBI	GATNNNNATC	3 cut(s)	1434, 2262, 2432
BsaHI	GRCGYC	2 cut(s)	96, 165
BsaJI	CCNNGG	7 cut(s)	27, 477, 509, 1051, 1440, 1773, 2402
BsaWI	WCCGGW	1 cut(s)	962
BsaXI	ACNNNNNCTCC	4 cut(s)	310, 340, 2000, 2030
Bsc4I	CCNNNNNNNGG	7 cut(s)	740, 1096, 1239, 2367, 2368, 2443, 2513
Bse1I	ACTGG	4 cut(s)	201, 558, 622, 2207
Bse3DI	GCAATG	1 cut(s)	437
Bse8I	GATNNNNATC	3 cut(s)	1434, 2262, 2432
BseAI	TCCGGA	1 cut(s)	962
BseBI	CCWGG	7 cut(s)	122, 258, 511, 1053, 1091, 1442, 1607
BseDI	CCNNGG	7 cut(s)	27, 477, 509, 1051, 1440, 1773, 2402
BseGI	GGATG	3 cut(s)	1036, 1615, 1783
BseJI	GATNNNNATC	3 cut(s)	1434, 2262, 2432
BseLI	CCNNNNNNNGG	7 cut(s)	740, 1096, 1239, 2367, 2368, 2443, 2513
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	7 cut(s)	218, 515, 858, 1254, 1725, 2151, 2334
BseNI	ACTGG	4 cut(s)	201, 558, 622, 2207
BseRI	GAGGAG	4 cut(s)	409, 1280, 1547, 2021
BseSI	GKGCMC	1 cut(s)	1471
BseXI	GCAGC	7 cut(s)	1005, 1264, 1474, 1579, 1975, 2433, 2464
BseYI	CCCAGC	1 cut(s)	1373
BsgI	GTGCAG	1 cut(s)	2559
Bsh1236I	CGCG	4 cut(s)	29, 60, 71, 73
BshFI	GGCC	2 cut(s)	744, 1400
BshNI	GGYRCC	1 cut(s)	883
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	1961
BsiSI	CCGG	2 cut(s)	63, 963
BslFI	GGGAC	2 cut(s)	207, 1604
BslI	CCNNNNNNNGG	7 cut(s)	740, 1096, 1239, 2367, 2368, 2443, 2513
BsmAI	GTCTC	3 cut(s)	60, 177, 1329
BsmBI	CGTCTC	2 cut(s)	60, 177
BsmFI	GGGAC	2 cut(s)	207, 1604
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	744, 1400
BsoBI	CYCGRG	1 cut(s)	1961
Bsp1286I	GDGCHC	2 cut(s)	93, 1471
Bsp13I	TCCGGA	1 cut(s)	962
Bsp1407I	TGTACA	2 cut(s)	567, 2132
Bsp1720I	GCTNAGC	1 cut(s)	1571
BspANI	GGCC	2 cut(s)	744, 1400
BspCNI	CTCAG	7 cut(s)	219, 514, 859, 1255, 1726, 2152, 2335
BspEI	TCCGGA	1 cut(s)	962
BspFNI	CGCG	4 cut(s)	29, 60, 71, 73
BspHI	TCATGA	1 cut(s)	1356
BspLI	GGNNCC	2 cut(s)	885, 1846
BspMAI	CTGCAG	2 cut(s)	1206, 1464
BspMI	ACCTGC	1 cut(s)	2298
BspPI	GGATC	5 cut(s)	725, 1131, 1258, 1644, 1673
BspQI	GCTCTTC	2 cut(s)	81, 2025
BspT107I	GGYRCC	1 cut(s)	883
BspTI	CTTAAG	1 cut(s)	781
BsrBI	CCGCTC	1 cut(s)	1240
BsrDI	GCAATG	1 cut(s)	437
BsrGI	TGTACA	2 cut(s)	567, 2132
BsrI	ACTGG	4 cut(s)	201, 558, 622, 2207
BssECI	CCNNGG	7 cut(s)	27, 477, 509, 1051, 1440, 1773, 2402
BssNI	GRCGYC	2 cut(s)	96, 165
BssT1I	CCWWGG	2 cut(s)	477, 2402
Bst2UI	CCWGG	7 cut(s)	122, 258, 511, 1053, 1091, 1442, 1607
Bst4CI	ACNGT	9 cut(s)	299, 606, 877, 1071, 1160, 1411, 1500, 2052, 2232
Bst6I	CTCTTC	6 cut(s)	81, 964, 1052, 1071, 1679, 2025
BstACI	GRCGYC	2 cut(s)	96, 165
BstAFI	CTTAAG	1 cut(s)	781
BstAPI	GCANNNNNTGC	1 cut(s)	1459
BstAUI	TGTACA	2 cut(s)	567, 2132
BstBAI	YACGTR	2 cut(s)	403, 2605
BstC8I	GCNNGC	7 cut(s)	58, 882, 899, 1298, 1455, 1467, 2166
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	2285
BstENI	CCTNNNNNAGG	1 cut(s)	1094
BstF5I	GGATG	3 cut(s)	1036, 1615, 1783
BstFNI	CGCG	4 cut(s)	29, 60, 71, 73
BstH2I	RGCGCY	2 cut(s)	589, 1273
BstHHI	GCGC	6 cut(s)	62, 73, 375, 538, 588, 1272
BstMAI	GTCTC	3 cut(s)	60, 177, 1329
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 381, 943, 1459
BstNI	CCWGG	7 cut(s)	122, 258, 511, 1053, 1091, 1442, 1607
BstNSI	RCATGY	1 cut(s)	2506
BstPI	GGTNACC	1 cut(s)	2285
BstSCI	CCNGG	7 cut(s)	120, 256, 509, 1051, 1089, 1440, 1605
BstSFI	CTRYAG	2 cut(s)	1202, 1460
BstSLI	GKGCMC	1 cut(s)	1471
BstUI	CGCG	4 cut(s)	29, 60, 71, 73
BstV1I	GCAGC	7 cut(s)	1005, 1264, 1474, 1579, 1975, 2433, 2464
BstV2I	GAAGAC	2 cut(s)	1345, 2067
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
BsuI	GTATCC	3 cut(s)	1930, 2033, 2261
BsuRI	GGCC	2 cut(s)	744, 1400
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	3 cut(s)	1036, 1615, 1783
BtsIMutI	CAGTG	7 cut(s)	565, 642, 882, 1755, 2048, 2200, 2228
BveI	ACCTGC	1 cut(s)	2298
Cac8I	GCNNGC	7 cut(s)	58, 882, 899, 1298, 1455, 1467, 2166
CaiI	CAGNNNCTG	1 cut(s)	2108
CciI	TCATGA	1 cut(s)	1356
CfoI	GCGC	6 cut(s)	62, 73, 375, 538, 588, 1272
Cfr13I	GGNCC	3 cut(s)	260, 1603, 2622
Cfr42I	CCGCGG	1 cut(s)	30
CpoI	CGGWCCG	1 cut(s)	2622
CseI	GACGC	5 cut(s)	62, 77, 85, 154, 1192
CsiI	ACCWGGT	2 cut(s)	120, 1089
Csp6I	GTAC	7 cut(s)	568, 816, 1496, 1742, 2133, 2414, 2548
CspCI	CAANNNNNGTGG	2 cut(s)	1837, 1872
CspI	CGGWCCG	1 cut(s)	2622
CviAII	CATG	7 cut(s)	746, 805, 1145, 1357, 1543, 2089, 2503
CviQI	GTAC	7 cut(s)	568, 816, 1496, 1742, 2133, 2414, 2548
DraI	TTTAAA	1 cut(s)	826
DraIII	CACNNNGTG	1 cut(s)	1162
DrdI	GACNNNNNNGTC	3 cut(s)	74, 302, 2205
DriI	GACNNNNNGTC	1 cut(s)	2092
DseDI	GACNNNNNNGTC	3 cut(s)	74, 302, 2205
EaeI	YGGCCR	1 cut(s)	1398
Eam1104I	CTCTTC	6 cut(s)	81, 964, 1052, 1071, 1679, 2025
Eam1105I	GACNNNNNGTC	1 cut(s)	2092
EarI	CTCTTC	6 cut(s)	81, 964, 1052, 1071, 1679, 2025
EciI	GGCGGA	1 cut(s)	800
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	477, 2402
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	3 cut(s)	260, 1603, 2622
Eco47III	AGCGCT	2 cut(s)	587, 1271
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	4 cut(s)	105, 131, 663, 1691
Eco88I	CYCGRG	1 cut(s)	1961
Eco91I	GGTNACC	1 cut(s)	2285
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	1094
EcoO65I	GGTNACC	1 cut(s)	2285
EcoRII	CCWGG	7 cut(s)	120, 256, 509, 1051, 1089, 1440, 1605
EcoT14I	CCWWGG	2 cut(s)	477, 2402
EcoT22I	ATGCAT	2 cut(s)	666, 2530
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	477, 2402
Esp3I	CGTCTC	2 cut(s)	60, 177
FaeI	CATG	7 cut(s)	749, 808, 1148, 1360, 1546, 2092, 2506
FalI	AAGNNNNNCTT	2 cut(s)	2476, 2508
FaqI	GGGAC	2 cut(s)	207, 1604
FatI	CATG	7 cut(s)	745, 804, 1144, 1356, 1542, 2088, 2502
FauI	CCCGC	2 cut(s)	1458, 2426
FauNDI	CATATG	1 cut(s)	466
FbaI	TGATCA	2 cut(s)	1003, 1333
FblI	GTMKAC	1 cut(s)	78
FokI	GGATG	3 cut(s)	1023, 1622, 1790
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	6 cut(s)	161, 695, 1101, 1511, 1638, 2403
GlaI	GCGC	6 cut(s)	61, 72, 374, 537, 587, 1271
GsaI	CCCAGC	1 cut(s)	1377
GsuI	CTGGAG	4 cut(s)	532, 747, 861, 1235
HaeII	RGCGCY	2 cut(s)	589, 1273
HaeIII	GGCC	2 cut(s)	744, 1400
HapII	CCGG	2 cut(s)	63, 963
HgaI	GACGC	5 cut(s)	62, 77, 85, 154, 1192
HhaI	GCGC	6 cut(s)	62, 73, 375, 538, 588, 1272
Hin1I	GRCGYC	2 cut(s)	96, 165
Hin1II	CATG	7 cut(s)	749, 808, 1148, 1360, 1546, 2092, 2506
Hin6I	GCGC	6 cut(s)	60, 71, 373, 536, 586, 1270
HinP1I	GCGC	6 cut(s)	60, 71, 373, 536, 586, 1270
HincII	GTYRAC	4 cut(s)	79, 169, 459, 1447
HindII	GTYRAC	4 cut(s)	79, 169, 459, 1447
HindIII	AAGCTT	2 cut(s)	778, 1109
HpaII	CCGG	2 cut(s)	63, 963
HphI	GGTGA	6 cut(s)	110, 246, 368, 2297, 2300, 2312
Hpy166II	GTNNAC	5 cut(s)	79, 169, 459, 1447, 2135
Hpy188III	TCNNGA	8 cut(s)	488, 840, 963, 1214, 1357, 1682, 2196, 2522
Hpy8I	GTNNAC	5 cut(s)	79, 169, 459, 1447, 2135
Hpy99I	CGWCG	1 cut(s)	2558
HpyAV	CCTTC	8 cut(s)	122, 232, 564, 687, 901, 1732, 1835, 2573
HpyCH4III	ACNGT	9 cut(s)	299, 606, 877, 1071, 1160, 1411, 1500, 2052, 2232
HpyCH4IV	ACGT	7 cut(s)	171, 206, 402, 1494, 1522, 1972, 2604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 381, 943, 1459
HpySE526I	ACGT	7 cut(s)	171, 206, 402, 1494, 1522, 1972, 2604
Hsp92I	GRCGYC	2 cut(s)	96, 165
Hsp92II	CATG	7 cut(s)	749, 808, 1148, 1360, 1546, 2092, 2506
HspAI	GCGC	6 cut(s)	60, 71, 373, 536, 586, 1270
Kpn2I	TCCGGA	1 cut(s)	962
Ksp22I	TGATCA	2 cut(s)	1003, 1333
KspI	CCGCGG	1 cut(s)	30
LguI	GCTCTTC	2 cut(s)	81, 2025
LmnI	GCTCC	6 cut(s)	331, 513, 797, 813, 934, 1267
Lsp1109I	GCAGC	7 cut(s)	1005, 1264, 1474, 1579, 1975, 2433, 2464
LweI	GCATC	8 cut(s)	495, 651, 2215, 2248, 2302, 2474, 2515, 2537
MabI	ACCWGGT	2 cut(s)	120, 1089
MaeI	CTAG	6 cut(s)	161, 695, 1101, 1511, 1638, 2403
MaeII	ACGT	7 cut(s)	171, 206, 402, 1494, 1522, 1972, 2604
MbiI	CCGCTC	1 cut(s)	1240
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	2 cut(s)	93, 1471
MlyI	GAGTC	3 cut(s)	74, 845, 2345
Mph1103I	ATGCAT	2 cut(s)	666, 2530
MroI	TCCGGA	1 cut(s)	962
MroXI	GAANNNNTTC	2 cut(s)	1228, 2562
MseI	TTAA	6 cut(s)	782, 825, 1304, 1692, 1797, 2616
MslI	CAYNNNNRTG	4 cut(s)	311, 405, 1149, 2298
MspA1I	CMGCKG	6 cut(s)	29, 1018, 1403, 1465, 2181, 2477
MspCI	CTTAAG	1 cut(s)	781
MspI	CCGG	2 cut(s)	63, 963
MspR9I	CCNGG	7 cut(s)	122, 258, 511, 1053, 1091, 1442, 1607
Mva1269I	GAATGC	1 cut(s)	375
MvaI	CCWGG	7 cut(s)	122, 258, 511, 1053, 1091, 1442, 1607
MvnI	CGCG	4 cut(s)	29, 60, 71, 73
MwoI	GCNNNNNNNGC	4 cut(s)	68, 381, 943, 1459
NdeI	CATATG	1 cut(s)	466
NlaIII	CATG	7 cut(s)	749, 808, 1148, 1360, 1546, 2092, 2506
NlaIV	GGNNCC	2 cut(s)	885, 1846
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	7 cut(s)	252, 289, 304, 1640, 1920, 2084, 2285
NsiI	ATGCAT	2 cut(s)	666, 2530
NspI	RCATGY	1 cut(s)	2506
PaeR7I	CTCGAG	1 cut(s)	1961
PagI	TCATGA	1 cut(s)	1356
PciSI	GCTCTTC	2 cut(s)	81, 2025
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 2465, 2566
PctI	GAATGC	1 cut(s)	375
PdmI	GAANNNNTTC	2 cut(s)	1228, 2562
PfeI	GAWTC	8 cut(s)	340, 1390, 1435, 1880, 2099, 2192, 2330, 2356
PleI	GAGTC	3 cut(s)	74, 844, 2345
PpsI	GAGTC	3 cut(s)	74, 844, 2345
Ppu21I	YACGTR	2 cut(s)	403, 2605
PsiI	TTATAA	3 cut(s)	1115, 2315, 2397
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	7 cut(s)	120, 256, 509, 1051, 1089, 1440, 1605
PspEI	GGTNACC	1 cut(s)	2285
PspFI	CCCAGC	1 cut(s)	1373
PspGI	CCWGG	7 cut(s)	120, 256, 509, 1051, 1089, 1440, 1605
PspN4I	GGNNCC	2 cut(s)	885, 1846
PspPI	GGNCC	3 cut(s)	260, 1603, 2622
PspXI	VCTCGAGB	1 cut(s)	1961
PsrI	GAACNNNNNNTAC	2 cut(s)	2550, 2582
PstI	CTGCAG	2 cut(s)	1206, 1464
PstNI	CAGNNNCTG	1 cut(s)	2108
PsuI	RGATCY	1 cut(s)	730
PvuII	CAGCTG	3 cut(s)	1018, 2181, 2477
RsaI	GTAC	7 cut(s)	569, 817, 1497, 1743, 2134, 2415, 2549
RsaNI	GTAC	7 cut(s)	568, 816, 1496, 1742, 2133, 2414, 2548
RseI	CAYNNNNRTG	4 cut(s)	311, 405, 1149, 2298
Rsr2I	CGGWCCG	1 cut(s)	2622
RsrII	CGGWCCG	1 cut(s)	2622
SacI	GAGCTC	1 cut(s)	93
SacII	CCGCGG	1 cut(s)	30
SalI	GTCGAC	1 cut(s)	77
SapI	GCTCTTC	2 cut(s)	81, 2025
SaqAI	TTAA	6 cut(s)	782, 825, 1304, 1692, 1797, 2616
Sau96I	GGNCC	3 cut(s)	260, 1603, 2622
SchI	GAGTC	3 cut(s)	74, 845, 2345
ScrFI	CCNGG	7 cut(s)	122, 258, 511, 1053, 1091, 1442, 1607
SduI	GDGCHC	2 cut(s)	93, 1471
SexAI	ACCWGGT	2 cut(s)	120, 1089
SfaNI	GCATC	8 cut(s)	495, 651, 2215, 2248, 2302, 2474, 2515, 2537
SfcI	CTRYAG	2 cut(s)	1202, 1460
Sfr274I	CTCGAG	1 cut(s)	1961
Sfr303I	CCGCGG	1 cut(s)	30
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	3 cut(s)	260, 1603, 2622
SlaI	CTCGAG	1 cut(s)	1961
SmiMI	CAYNNNNRTG	4 cut(s)	311, 405, 1149, 2298
SmlI	CTYRAG	4 cut(s)	781, 1326, 1961, 1982
SmoI	CTYRAG	4 cut(s)	781, 1326, 1961, 1982
SspI	AATATT	2 cut(s)	924, 994
SspMI	CTAG	6 cut(s)	161, 695, 1101, 1511, 1638, 2403
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	7 cut(s)	120, 256, 509, 1051, 1089, 1440, 1605
StyI	CCWWGG	2 cut(s)	477, 2402
TaaI	ACNGT	9 cut(s)	299, 606, 877, 1071, 1160, 1411, 1500, 2052, 2232
TaiI	ACGT	7 cut(s)	174, 209, 405, 1497, 1525, 1975, 2607
TaqI	TCGA	7 cut(s)	78, 126, 1677, 1962, 2354, 2459, 2556
TatI	WGTACW	2 cut(s)	567, 2132
TauI	GCSGC	4 cut(s)	29, 32, 1243, 1403
TfiI	GAWTC	8 cut(s)	340, 1390, 1435, 1880, 2099, 2192, 2330, 2356
Tru1I	TTAA	6 cut(s)	782, 825, 1304, 1692, 1797, 2616
Tru9I	TTAA	6 cut(s)	782, 825, 1304, 1692, 1797, 2616
TscAI	CASTG	7 cut(s)	565, 649, 882, 1755, 2055, 2207, 2235
TseFI	GTSAC	7 cut(s)	252, 289, 304, 1640, 1920, 2084, 2285
TseI	GCWGC	7 cut(s)	1018, 1277, 1462, 1567, 1988, 2421, 2477
Tsp45I	GTSAC	7 cut(s)	252, 289, 304, 1640, 1920, 2084, 2285
TspDTI	ATGAA	9 cut(s)	17, 210, 546, 793, 1089, 1345, 1502, 1701, 1893
TspGWI	ACGGA	3 cut(s)	308, 1029, 2542
TspRI	CASTG	7 cut(s)	565, 649, 882, 1755, 2055, 2207, 2235
Vha464I	CTTAAG	1 cut(s)	781
VpaK11BI	GGWCC	3 cut(s)	260, 1603, 2622
XagI	CCTNNNNNAGG	1 cut(s)	1094
XapI	RAATTY	4 cut(s)	821, 1787, 1907, 2279
XceI	RCATGY	1 cut(s)	2506
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1583, 2120
XhoI	CTCGAG	1 cut(s)	1961
XmaJI	CCTAGG	1 cut(s)	2402
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	2 cut(s)	1228, 2562
XspI	CTAG	6 cut(s)	161, 695, 1101, 1511, 1638, 2403
Zsp2I	ATGCAT	2 cut(s)	666, 2530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.