Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Forward (+)

38245511 .. 38256352

Gene Structure 10842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57238

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2634 bp

ATGATGAATTACGAGAAGAGGCTCAGAGCCGCGGCGGAGATCATACTCGCCGACGACGCACGCGCCGGAGACGCGCGTGTCAGCTCCGAAGAGCTCGGCGTGACGGCGACGCTGAAGCCGCACCAAGTCGAAGGCGTCTCGTGGCTCATACGGCGGTACAACCTCGGCGTCAACGTCGTTCTCGGAGATGAGATGGGACTGGGAAAGACTCTGCAAGCTGTCGCTTTATTGAGCTATTTGAAGGTTCAAAAGATGTCATGTGGACCATTCTTGGTGTTGTGTCCTCTAAGTGTGACTGATGGTTGGGTCTCGGAGATGGAAAACTTTGCTCCAAAATTAAAATTTGTACGGTATGTTGGTGATAAAGAATATAGGCGCAGCTTACGCAGGACAATATATGAGCATGTGAAAGTGCATTCCTCGGTATCTGATATGTTGTCGTTACCTTTCGATGTCCTGTTGACAACATATGACATTGCGTTGGCCGATCAGGATTTCCTTTCTCAAATACCATGGAACTATGCAGTAATTGATGAAGCGCAAAGGCTTAAAAACCCTTCCAGTGTTCTGTACAATGTCCTAAGAGAGCGGTATCTCATTCCAAGAAGGTTACTGATGACTGGCACACCTATTCAAAACAATCTCACTGAACTGTGGGCTTTGATGTATTTTTGTATGCCTTCAGTCTTTCTGAAACTGGACGAGTTCCTTGTTACATTCAAGGAAGCTGGAGATCCTTCGTCAGGCTATAATACAGCTGAAGTCATAGAACAACTCAAAAGCTTAAAACGCATATTGGGGGCTTTCATGCTCCGGCGCACAAAATCTAAACTCATCGAGATTGGAGATCTATTCCTGCCACCCCTTACTGAGATAACAGTGCTGGCACCACTGGTCAGCTTGCAAAAGAAGGTGTACATGTCAATATTGAGGAAGGAGCTTCCTAAGCTACTTGCACTATCTTCTGGAGGTTCAAATCATCAATCCTTACAGAATATTGTGATACAGTTGCGAAAAGCATGTAGCCATCCTTATCTCTTCCCTGGTATTGAGCCAGAACCATATGAAGAGGGTGAACACCTGATTCAGGCTAGCGGTAAACTTATGATTTTGGATCGACTACTTTGGAAGCTGCATGAGCAGGGACGCCGTGTCCTTCTCTTTGCTCAGATGACACATACACTCGATGTTCTACAGGATTTTCTTGAGTTGCGAAAATATTCCTACGAGCGCCTTGATGGATCAATTCGGGCTGAGGAGCGGTTTGCTGCTATAAGAAGTTTCAGCAAGCAATCAGCAAAACAAAGTTTGAAGTCCCAAGCTGATCAAAATGATGCTTTTGTCTTCATGATCTCCACTAGAGCTGGGGGAGTTGGCTTGAATCTTGTTGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCCCAGGTTGATAAGCAAGCTTTGCAGCGGGCACACAGGATTGGTCAATTAAATTCTGTGCTGTCAATAAACCTAGTTACCGGACGTACAGTGGAGGAGGTTATCATGCGGAGAGCAGAAAGGAAGTTGCAGCTTAGCCATAATGTTATTGGGGATGATGTTATGGACGAGGAAGGTAAAGAGACAGCAGGAGTTGAACCTAGTGACCTGCGATCTATCATATTTGGGTTACATCTGTTTGATCCTGCTGAAGTCAACAATGGTGAGTGTGAGATTTCAGAATTGGATGCTTTGGCCGAGAAGGCGATTTCAGTGCGCAATAAAGAAACAGCAACCAAGGATGAGAGGAAATTTGAGGTCGGTGCAACGGATGTATTGAATGGACAAGATCTGGTTGCAGGAGGAAGTTCTACTTCTCTCGGTTTAAATACTAGTTTCGATGAAGATTCATATCTCTCCTGGGTTAAGAAATTCAAGGAGGTACCACAAGCAAGTAGCAATGAAAATTCAGATATGGGAAGCCGAAGAAACTTACCCGAGGAAAGGCGTCTAAAACTTGAGGCTGCAAAAAAAAGAGCAGAGGAAAAGAAGTTATCTAGGTGGGTAGACCTGGGCTACCAATCACTGTCTGTTGAGGAGCCTATCAGTCCTGTTGATAGGGACATCATGTCCGACTCAGGTTCTGTCCAGTTTGTTTATGGAGATTGTACACAACCATCAAAAGTTTGTCCCTCTAAGCCTACCATTATTTTGAGCTGTGTTGATGATTCGGGACAGTGGGGTCATGGAGGAATGTTTAATGCACTGGAGAGGCTATCTGCAAGTGTCCCCGATGCATATCAACGAGCCTCTGAATTTAACGACCTGCATCTTGGTGATCTTCACCTTATAAGACTTGATGAGGATTCGAATGAACAGAAGATGGACAGCAATCCCCCTCGATGGGTGGCTTTAGCTGTTGTACAATCTTATAATCCCAGGCGTAAAGTACCCCGGAGCAAGATTTCTATTCCTGACTTGGAACGTTGCTTATCAAAGGCATCGTTTTCAGCCGCCCAAAGTTCTGCTTCAATCCACATGCCACGTATTGGGTATCAAGATGCATCGGATCGTGCAGAATGGTATGCGGTGGAACGTCTTCTACGAAAATATGCTTCTATCCATGGCATAAAGATTTATGTGTATTATTATAGACGATCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

877

Amino Acids

98.96

Weight (kDa)

6.41

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	41 - 346	6e-66	SNF2-related domain
Helicase_C	PF00271	367 - 491	1.2e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2318, 2400
AasI	GACNNNNNNGTC	2 cut(s)	77, 2208
Acc16I	TGCGCA	1 cut(s)	1745
Acc36I	ACCTGC	2 cut(s)	1644, 2301
Acc65I	GGTACC	1 cut(s)	1909
AccB1I	GGYRCC	2 cut(s)	886, 1909
AccB7I	CCANNNNNTGG	1 cut(s)	2516
AccBSI	CCGCTC	2 cut(s)	589, 1261
AccI	GTMKAC	1 cut(s)	2034
AccII	CGCG	4 cut(s)	32, 63, 74, 76
AclI	AACGTT	1 cut(s)	2452
AclWI	GGATC	5 cut(s)	728, 1122, 1249, 1664, 2544
AcoI	YGGCCR	2 cut(s)	483, 1722
AcsI	RAATTY	6 cut(s)	341, 1480, 1778, 1898, 1933, 2282
AcuI	CTGAAG	4 cut(s)	134, 666, 780, 1698
AcyI	GRCGYC	4 cut(s)	135, 168, 1147, 1975
AfaI	GTAC	9 cut(s)	158, 348, 572, 917, 1516, 1911, 2137, 2391, 2418
AfiI	CCNNNNNNNGG	6 cut(s)	743, 1087, 1971, 2370, 2371, 2516
AflIII	ACRYGT	1 cut(s)	918
AhdI	GACNNNNNGTC	2 cut(s)	1151, 2095
AhlI	ACTAGT	1 cut(s)	1859
AjnI	CCWGG	5 cut(s)	1042, 1431, 1886, 2037, 2405
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	4 cut(s)	63, 142, 313, 1604
AlwI	GGATC	5 cut(s)	728, 1122, 1249, 1664, 2544
AlwNI	CAGNNNCTG	1 cut(s)	2111
Ama87I	CYCGRG	1 cut(s)	1964
AoxI	GGCC	2 cut(s)	483, 1722
ApeKI	GCWGC	7 cut(s)	378, 1132, 1268, 1391, 1453, 1558, 1991
ApoI	RAATTY	6 cut(s)	341, 1480, 1778, 1898, 1933, 2282
Asp700I	GAANNNNTTC	2 cut(s)	1219, 2565
Asp718I	GGTACC	1 cut(s)	1909
AspLEI	GCGC	7 cut(s)	65, 76, 378, 541, 819, 1233, 1746
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	2422
AsuHPI	GGTGA	5 cut(s)	371, 1085, 1703, 2303, 2315
AsuII	TTCGAA	1 cut(s)	2336
AsuNHI	GCTAGC	1 cut(s)	1091
AvaI	CYCGRG	1 cut(s)	1964
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	1462
BanI	GGYRCC	2 cut(s)	886, 1909
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	139
BbsI	GAAGAC	2 cut(s)	1336, 2558
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	1254
BbvI	GCAGC	7 cut(s)	390, 1119, 1255, 1378, 1465, 1570, 1978
BccI	CCATC	8 cut(s)	187, 293, 310, 1035, 1232, 2152, 2344, 2364
BceAI	ACGGC	3 cut(s)	120, 167, 1134
BcgI	CGANNNNNNTGC	2 cut(s)	1723, 1757
BciT130I	CCWGG	5 cut(s)	1044, 1433, 1888, 2039, 2407
BclI	TGATCA	1 cut(s)	1324
BcnI	CCSGG	1 cut(s)	2422
BcoDI	GTCTC	4 cut(s)	63, 142, 313, 1604
BcuI	ACTAGT	1 cut(s)	1859
BfaI	CTAG	6 cut(s)	1092, 1359, 1502, 1629, 1860, 2025
BfmI	CTRYAG	1 cut(s)	1193
BfoI	RGCGCY	1 cut(s)	1234
BfuAI	ACCTGC	2 cut(s)	1644, 2301
BglI	GCCNNNNNGGC	1 cut(s)	1730
BglII	AGATCT	2 cut(s)	847, 1816
BlpI	GCTNAGC	1 cut(s)	1562
Bme1390I	CCNGG	6 cut(s)	1044, 1433, 1888, 2039, 2407, 2422
Bme18I	GGWCC	1 cut(s)	263
BmeRI	GACNNNNNGTC	2 cut(s)	1151, 2095
BmeT110I	CYCGRG	1 cut(s)	1964
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	888, 1911, 2067
BmrFI	CCNGG	6 cut(s)	1044, 1433, 1888, 2039, 2407, 2422
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	7 cut(s)	1324, 1705, 2251, 2305, 2477, 2518, 2540
BmtI	GCTAGC	1 cut(s)	1095
BmuI	ACTGGG	1 cut(s)	209
BpiI	GAAGAC	2 cut(s)	1336, 2558
BpmI	CTGGAG	3 cut(s)	750, 987, 2255
Bpu10I	CCTNAGC	2 cut(s)	945, 1254
Bpu1102I	GCTNAGC	1 cut(s)	1562
Bpu14I	TTCGAA	1 cut(s)	2336
BpuEI	CTTGAG	2 cut(s)	1226, 2006
BpuMI	CCSGG	1 cut(s)	2422
BsaAI	YACGTR	1 cut(s)	2513
BsaBI	GATNNNNATC	3 cut(s)	1425, 1878, 2265
BsaHI	GRCGYC	4 cut(s)	135, 168, 1147, 1975
BsaI	GGTCTC	1 cut(s)	313
BsaWI	WCCGGW	1 cut(s)	1508
Bsc4I	CCNNNNNNNGG	6 cut(s)	743, 1087, 1971, 2370, 2371, 2516
Bse1I	ACTGG	7 cut(s)	204, 561, 625, 702, 897, 2116, 2238
Bse3DI	GCAATG	2 cut(s)	474, 1933
Bse8I	GATNNNNATC	3 cut(s)	1425, 1878, 2265
BseBI	CCWGG	5 cut(s)	1044, 1433, 1888, 2039, 2407
BseGI	GGATG	5 cut(s)	1027, 1588, 1720, 1774, 1804
BseJI	GATNNNNATC	3 cut(s)	1425, 1878, 2265
BseLI	CCNNNNNNNGG	6 cut(s)	743, 1087, 1971, 2370, 2371, 2516
BseMI	GCAATG	2 cut(s)	474, 1933
BseMII	CTCAG	5 cut(s)	37, 861, 1181, 1245, 2118
BseNI	ACTGG	7 cut(s)	204, 561, 625, 702, 897, 2116, 2238
BseRI	GAGGAG	3 cut(s)	1271, 1538, 2078
BseSI	GKGCMC	1 cut(s)	1462
BseXI	GCAGC	7 cut(s)	390, 1119, 1255, 1378, 1465, 1570, 1978
BseYI	CCCAGC	1 cut(s)	1364
BsgI	GTGCAG	1 cut(s)	2562
Bsh1236I	CGCG	4 cut(s)	32, 63, 74, 76
BshFI	GGCC	2 cut(s)	485, 1724
BshNI	GGYRCC	2 cut(s)	886, 1909
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	1964
BsiSI	CCGG	4 cut(s)	66, 814, 1509, 2422
BslFI	GGGAC	7 cut(s)	210, 1158, 1300, 2102, 2142, 2214, 2240
BslI	CCNNNNNNNGG	6 cut(s)	743, 1087, 1971, 2370, 2371, 2516
BsmAI	GTCTC	4 cut(s)	63, 142, 313, 1604
BsmBI	CGTCTC	2 cut(s)	63, 142
BsmFI	GGGAC	7 cut(s)	210, 1158, 1300, 2102, 2142, 2214, 2240
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	485, 1724
Bso31I	GGTCTC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	1964
Bsp119I	TTCGAA	1 cut(s)	2336
Bsp1286I	GDGCHC	2 cut(s)	96, 1462
Bsp1407I	TGTACA	4 cut(s)	570, 915, 2135, 2389
Bsp1720I	GCTNAGC	1 cut(s)	1562
Bsp19I	CCATGG	2 cut(s)	512, 2590
BspANI	GGCC	2 cut(s)	485, 1724
BspCNI	CTCAG	5 cut(s)	36, 862, 1180, 1246, 2117
BspFNI	CGCG	4 cut(s)	32, 63, 74, 76
BspHI	TCATGA	1 cut(s)	1347
BspLI	GGNNCC	3 cut(s)	888, 1911, 2067
BspMI	ACCTGC	2 cut(s)	1644, 2301
BspOI	GCTAGC	1 cut(s)	1095
BspPI	GGATC	5 cut(s)	728, 1122, 1249, 1664, 2544
BspQI	GCTCTTC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	2336
BspT107I	GGYRCC	2 cut(s)	886, 1909
BspTNI	GGTCTC	1 cut(s)	313
BsrBI	CCGCTC	2 cut(s)	589, 1261
BsrDI	GCAATG	2 cut(s)	474, 1933
BsrGI	TGTACA	4 cut(s)	570, 915, 2135, 2389
BsrI	ACTGG	7 cut(s)	204, 561, 625, 702, 897, 2116, 2238
BssNI	GRCGYC	4 cut(s)	135, 168, 1147, 1975
BssSI	CACGAG	1 cut(s)	139
BssT1I	CCWWGG	3 cut(s)	512, 1764, 2590
Bst2BI	CACGAG	1 cut(s)	139
Bst2UI	CCWGG	5 cut(s)	1044, 1433, 1888, 2039, 2407
Bst4CI	ACNGT	8 cut(s)	351, 654, 880, 1008, 1402, 1519, 2055, 2205
Bst6I	CTCTTC	4 cut(s)	11, 84, 1043, 1062
BstACI	GRCGYC	4 cut(s)	135, 168, 1147, 1975
BstAPI	GCANNNNNTGC	1 cut(s)	1450
BstAUI	TGTACA	4 cut(s)	570, 915, 2135, 2389
BstBAI	YACGTR	1 cut(s)	2513
BstBI	TTCGAA	1 cut(s)	2336
BstC8I	GCNNGC	8 cut(s)	61, 216, 885, 902, 1093, 1289, 1446, 1458
BstDSI	CCRYGG	3 cut(s)	30, 512, 2590
BstENI	CCTNNNNNAGG	2 cut(s)	741, 1085
BstF5I	GGATG	5 cut(s)	1027, 1588, 1720, 1774, 1804
BstFNI	CGCG	4 cut(s)	32, 63, 74, 76
BstH2I	RGCGCY	1 cut(s)	1234
BstHHI	GCGC	7 cut(s)	65, 76, 378, 541, 819, 1233, 1746
BstMAI	GTCTC	4 cut(s)	63, 142, 313, 1604
BstNI	CCWGG	5 cut(s)	1044, 1433, 1888, 2039, 2407
BstNSI	RCATGY	4 cut(s)	407, 922, 1023, 2509
BstSCI	CCNGG	6 cut(s)	1042, 1431, 1886, 2037, 2405, 2420
BstSFI	CTRYAG	1 cut(s)	1193
BstSLI	GKGCMC	1 cut(s)	1462
BstUI	CGCG	4 cut(s)	32, 63, 74, 76
BstV1I	GCAGC	7 cut(s)	390, 1119, 1255, 1378, 1465, 1570, 1978
BstV2I	GAAGAC	2 cut(s)	1336, 2558
BstX2I	RGATCY	3 cut(s)	733, 847, 1816
BstYI	RGATCY	3 cut(s)	733, 847, 1816
BsuRI	GGCC	2 cut(s)	485, 1724
BtgI	CCRYGG	3 cut(s)	30, 512, 2590
BtsCI	GGATG	5 cut(s)	1027, 1588, 1720, 1774, 1804
BtsIMutI	CAGTG	9 cut(s)	568, 645, 885, 890, 1524, 1746, 2051, 2210, 2231
BveI	ACCTGC	2 cut(s)	1644, 2301
Cac8I	GCNNGC	8 cut(s)	61, 216, 885, 902, 1093, 1289, 1446, 1458
CaiI	CAGNNNCTG	1 cut(s)	2111
CciI	TCATGA	1 cut(s)	1347
CfoI	GCGC	7 cut(s)	65, 76, 378, 541, 819, 1233, 1746
Cfr13I	GGNCC	1 cut(s)	263
Cfr42I	CCGCGG	1 cut(s)	33
CseI	GACGC	7 cut(s)	65, 80, 118, 124, 157, 1155, 1964
Csp6I	GTAC	9 cut(s)	157, 347, 571, 916, 1515, 1910, 2136, 2390, 2417
CviQI	GTAC	9 cut(s)	157, 347, 571, 916, 1515, 1910, 2136, 2390, 2417
DraI	TTTAAA	1 cut(s)	1854
DrdI	GACNNNNNNGTC	2 cut(s)	77, 2208
DriI	GACNNNNNGTC	2 cut(s)	1151, 2095
DseDI	GACNNNNNNGTC	2 cut(s)	77, 2208
EaeI	YGGCCR	2 cut(s)	483, 1722
Eam1104I	CTCTTC	4 cut(s)	11, 84, 1043, 1062
Eam1105I	GACNNNNNGTC	2 cut(s)	1151, 2095
EarI	CTCTTC	4 cut(s)	11, 84, 1043, 1062
EciI	GGCGGA	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	3 cut(s)	512, 1764, 2590
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	4 cut(s)	134, 666, 780, 1698
Eco88I	CYCGRG	1 cut(s)	1964
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	2 cut(s)	741, 1085
EcoRII	CCWGG	5 cut(s)	1042, 1431, 1886, 2037, 2405
EcoT14I	CCWWGG	3 cut(s)	512, 1764, 2590
EcoT22I	ATGCAT	2 cut(s)	2266, 2533
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	3 cut(s)	512, 1764, 2590
Esp3I	CGTCTC	2 cut(s)	63, 142
FalI	AAGNNNNNCTT	4 cut(s)	1825, 1857, 2479, 2511
FaqI	GGGAC	7 cut(s)	210, 1158, 1300, 2102, 2142, 2214, 2240
FauI	CCCGC	1 cut(s)	1449
FauNDI	CATATG	2 cut(s)	469, 1063
FbaI	TGATCA	1 cut(s)	1324
FblI	GTMKAC	1 cut(s)	2034
FokI	GGATG	5 cut(s)	1014, 1595, 1727, 1781, 1811
FriOI	GRGCYC	1 cut(s)	96
FspBI	CTAG	6 cut(s)	1092, 1359, 1502, 1629, 1860, 2025
FspI	TGCGCA	1 cut(s)	1745
GlaI	GCGC	7 cut(s)	64, 75, 377, 540, 818, 1232, 1745
GsaI	CCCAGC	1 cut(s)	1368
GsuI	CTGGAG	3 cut(s)	750, 987, 2255
HaeII	RGCGCY	1 cut(s)	1234
HaeIII	GGCC	2 cut(s)	485, 1724
HapII	CCGG	4 cut(s)	66, 814, 1509, 2422
HgaI	GACGC	7 cut(s)	65, 80, 118, 124, 157, 1155, 1964
HhaI	GCGC	7 cut(s)	65, 76, 378, 541, 819, 1233, 1746
Hin1I	GRCGYC	4 cut(s)	135, 168, 1147, 1975
Hin6I	GCGC	7 cut(s)	63, 74, 376, 539, 817, 1231, 1744
HinP1I	GCGC	7 cut(s)	63, 74, 376, 539, 817, 1231, 1744
HincII	GTYRAC	3 cut(s)	172, 462, 1684
HindII	GTYRAC	3 cut(s)	172, 462, 1684
HindIII	AAGCTT	2 cut(s)	781, 1446
HinfI	GANTC	8 cut(s)	208, 1084, 1381, 1426, 1874, 2102, 2195, 2333
HpaII	CCGG	4 cut(s)	66, 814, 1509, 2422
HphI	GGTGA	5 cut(s)	371, 1085, 1703, 2303, 2315
Hpy166II	GTNNAC	9 cut(s)	172, 263, 462, 916, 1076, 1100, 1684, 2035, 2138
Hpy188III	TCNNGA	9 cut(s)	491, 838, 966, 1205, 1348, 2199, 2441, 2525, 2631
Hpy8I	GTNNAC	9 cut(s)	172, 263, 462, 916, 1076, 1100, 1684, 2035, 2138
Hpy99I	CGWCG	4 cut(s)	56, 59, 112, 179
HpyCH4III	ACNGT	8 cut(s)	351, 654, 880, 1008, 1402, 1519, 2055, 2205
HpyCH4IV	ACGT	5 cut(s)	174, 1513, 2452, 2512, 2563
HpySE526I	ACGT	5 cut(s)	174, 1513, 2452, 2512, 2563
Hsp92I	GRCGYC	4 cut(s)	135, 168, 1147, 1975
HspAI	GCGC	7 cut(s)	63, 74, 376, 539, 817, 1231, 1744
KpnI	GGTACC	1 cut(s)	1913
Ksp22I	TGATCA	1 cut(s)	1324
KspI	CCGCGG	1 cut(s)	33
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	7 cut(s)	89, 334, 816, 937, 1258, 2065, 2424
Lsp1109I	GCAGC	7 cut(s)	390, 1119, 1255, 1378, 1465, 1570, 1978
LweI	GCATC	7 cut(s)	1324, 1705, 2251, 2305, 2477, 2518, 2540
MaeI	CTAG	6 cut(s)	1092, 1359, 1502, 1629, 1860, 2025
MaeII	ACGT	5 cut(s)	174, 1513, 2452, 2512, 2563
MaeIII	GTNAC	8 cut(s)	100, 292, 441, 609, 712, 1504, 1631, 1656
MbiI	CCGCTC	2 cut(s)	589, 1261
MflI	RGATCY	3 cut(s)	733, 847, 1816
MhlI	GDGCHC	2 cut(s)	96, 1462
MlyI	GAGTC	2 cut(s)	202, 2096
MmeI	TCCRAC	1 cut(s)	2124
Mph1103I	ATGCAT	2 cut(s)	2266, 2533
MroXI	GAANNNNTTC	2 cut(s)	1219, 2565
MseI	TTAA	8 cut(s)	338, 549, 785, 1478, 1853, 1893, 2226, 2286
MslI	CAYNNNNRTG	1 cut(s)	2301
MspA1I	CMGCKG	3 cut(s)	32, 758, 1456
MspI	CCGG	4 cut(s)	66, 814, 1509, 2422
MspR9I	CCNGG	6 cut(s)	1044, 1433, 1888, 2039, 2407, 2422
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	5 cut(s)	1044, 1433, 1888, 2039, 2407
MvnI	CGCG	4 cut(s)	32, 63, 74, 76
NciI	CCSGG	1 cut(s)	2422
NcoI	CCATGG	2 cut(s)	512, 2590
NdeI	CATATG	2 cut(s)	469, 1063
NheI	GCTAGC	1 cut(s)	1091
NlaIV	GGNNCC	3 cut(s)	888, 1911, 2067
NmeAIII	GCCGAG	3 cut(s)	75, 144, 1750
NmuCI	GTSAC	3 cut(s)	100, 292, 1631
NsbI	TGCGCA	1 cut(s)	1745
NsiI	ATGCAT	2 cut(s)	2266, 2533
NspI	RCATGY	4 cut(s)	407, 922, 1023, 2509
NspV	TTCGAA	1 cut(s)	2336
PagI	TCATGA	1 cut(s)	1347
PciI	ACATGT	1 cut(s)	918
PciSI	GCTCTTC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 2569
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	2 cut(s)	1219, 2565
PfeI	GAWTC	6 cut(s)	1084, 1381, 1426, 1874, 2195, 2333
PflMI	CCANNNNNTGG	1 cut(s)	2516
PleI	GAGTC	2 cut(s)	202, 2096
PpsI	GAGTC	2 cut(s)	202, 2096
Ppu21I	YACGTR	1 cut(s)	2513
PscI	ACATGT	1 cut(s)	918
PsiI	TTATAA	2 cut(s)	2318, 2400
Psp124BI	GAGCTC	1 cut(s)	96
Psp1406I	AACGTT	1 cut(s)	2452
Psp6I	CCWGG	5 cut(s)	1042, 1431, 1886, 2037, 2405
PspFI	CCCAGC	1 cut(s)	1364
PspGI	CCWGG	5 cut(s)	1042, 1431, 1886, 2037, 2405
PspN4I	GGNNCC	3 cut(s)	888, 1911, 2067
PspPI	GGNCC	1 cut(s)	263
PsrI	GAACNNNNNNTAC	2 cut(s)	2553, 2585
PstNI	CAGNNNCTG	1 cut(s)	2111
PsuI	RGATCY	3 cut(s)	733, 847, 1816
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	9 cut(s)	158, 348, 572, 917, 1516, 1911, 2137, 2391, 2418
RsaNI	GTAC	9 cut(s)	157, 347, 571, 916, 1515, 1910, 2136, 2390, 2417
RseI	CAYNNNNRTG	1 cut(s)	2301
SacI	GAGCTC	1 cut(s)	96
SacII	CCGCGG	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	8 cut(s)	338, 549, 785, 1478, 1853, 1893, 2226, 2286
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	202, 2096
ScrFI	CCNGG	6 cut(s)	1044, 1433, 1888, 2039, 2407, 2422
SduI	GDGCHC	2 cut(s)	96, 1462
SfaNI	GCATC	7 cut(s)	1324, 1705, 2251, 2305, 2477, 2518, 2540
SfcI	CTRYAG	1 cut(s)	1193
Sfr303I	CCGCGG	1 cut(s)	33
SfuI	TTCGAA	1 cut(s)	2336
SgrBI	CCGCGG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	2301
SmlI	CTYRAG	2 cut(s)	1205, 1985
SmoI	CTYRAG	2 cut(s)	1205, 1985
SpeI	ACTAGT	1 cut(s)	1859
SspI	AATATT	3 cut(s)	927, 997, 1220
SspMI	CTAG	6 cut(s)	1092, 1359, 1502, 1629, 1860, 2025
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	6 cut(s)	1042, 1431, 1886, 2037, 2405, 2420
StyI	CCWWGG	3 cut(s)	512, 1764, 2590
TaaI	ACNGT	8 cut(s)	351, 654, 880, 1008, 1402, 1519, 2055, 2205
TaiI	ACGT	5 cut(s)	177, 1516, 2455, 2515, 2566
TaqI	TCGA	8 cut(s)	129, 450, 837, 1117, 1185, 1866, 2336, 2368
TatI	WGTACW	4 cut(s)	570, 915, 2135, 2389
TauI	GCSGC	4 cut(s)	32, 35, 121, 2483
TfiI	GAWTC	6 cut(s)	1084, 1381, 1426, 1874, 2195, 2333
Tru1I	TTAA	8 cut(s)	338, 549, 785, 1478, 1853, 1893, 2226, 2286
Tru9I	TTAA	8 cut(s)	338, 549, 785, 1478, 1853, 1893, 2226, 2286
TscAI	CASTG	9 cut(s)	568, 652, 885, 897, 1524, 1746, 2058, 2210, 2238
TseFI	GTSAC	3 cut(s)	100, 292, 1631
TseI	GCWGC	7 cut(s)	378, 1132, 1268, 1391, 1453, 1558, 1991
Tsp45I	GTSAC	3 cut(s)	100, 292, 1631
TspDTI	ATGAA	9 cut(s)	20, 549, 796, 1080, 1336, 1866, 1884, 1944, 2355
TspGWI	ACGGA	1 cut(s)	1811
TspRI	CASTG	9 cut(s)	568, 652, 885, 897, 1524, 1746, 2058, 2210, 2238
Van91I	CCANNNNNTGG	1 cut(s)	2516
VpaK11BI	GGWCC	1 cut(s)	263
XagI	CCTNNNNNAGG	2 cut(s)	741, 1085
XapI	RAATTY	6 cut(s)	341, 1480, 1778, 1898, 1933, 2282
XceI	RCATGY	4 cut(s)	407, 922, 1023, 2509
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1574, 2123
XmiI	GTMKAC	1 cut(s)	2034
XmnI	GAANNNNTTC	2 cut(s)	1219, 2565
XspI	CTAG	6 cut(s)	1092, 1359, 1502, 1629, 1860, 2025
Zsp2I	ATGCAT	2 cut(s)	2266, 2533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.