Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Reverse (-)

24436961 .. 24439466

Gene Structure 2506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0178100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGTTGAAGCTACAAGCTTCTGTCAATTCTGGAGGGGCTTTTGGACGACTGTACTCGTATGAAGCAGGTTATGCTCTTAGTTCTGTTAAAGGACGGGTTGCAATGAAATTCTTTGACCTCTCAGAGGCTAGTCAAACCAAAAAATATGCATTTAAGTATCATAGAAAATCAGAGGCCGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

61

Amino Acids

6.79

Weight (kDa)

9.99

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	7
AluBI	AGCT	2 cut(s)	10, 17
AluI	AGCT	2 cut(s)	10, 17
AoxI	GGCC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	107
BfaI	CTAG	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	124
BsnI	GGCC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	134
BspMI	ACCTGC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	77, 121
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	52
CviJI	RGCY	5 cut(s)	10, 17, 38, 128, 176
CviKI_1	RGCY	5 cut(s)	10, 17, 38, 128, 176
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	77, 121
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoT22I	ATGCAT	1 cut(s)	151
FaiI	YATR	4 cut(s)	60, 72, 147, 162
FspBI	CTAG	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	15
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	124, 172
Hpy188III	TCNNGA	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	101, 149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	77, 121
LpnPI	CCDG	2 cut(s)	15, 51
MaeI	CTAG	1 cut(s)	129
MluCI	AATT	2 cut(s)	25, 107
MnlI	CCTC	4 cut(s)	26, 118, 128, 166
Mph1103I	ATGCAT	1 cut(s)	151
MseI	TTAA	2 cut(s)	87, 153
MspI	CCGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	151
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	87, 153
SetI	ASST	5 cut(s)	12, 19, 70, 120, 185
SgeI	CNNG	6 cut(s)	26, 42, 67, 78, 107, 141
Sse9I	AATT	2 cut(s)	25, 107
SspMI	CTAG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	51
TasI	AATT	2 cut(s)	25, 107
TatI	WGTACW	1 cut(s)	51
Tru1I	TTAA	2 cut(s)	87, 153
Tru9I	TTAA	2 cut(s)	87, 153
TspDTI	ATGAA	2 cut(s)	75, 119
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	107
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.