Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Forward (+)

38348179 .. 38356368

Gene Structure 8190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG193400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGGGACTGGGCAAGACTCTGCAAGCTGTCGCTTTGTTGAGCTATTTGAAGGTTCAAAAGATGTCACATGGACCATTCTTGGTGTTGTGTCCTCTAAGTGTGACTGATGGTTGGGTCTCAGAGATGGAAAACTTTGCTCCAAAACTAAAAGTTGTACGGTATGTTGGTGATAAAGAATATAGGCGCAGCTTACGTAGGACAATGTATGAGCATGTGAAAGAGCATTCCTCAGTATCTAATGTTCTGTACAATGTCCTAAGAGAGCGGTACCTCATTCCAAGAAGGTTACTGATGACTGGCACACCTATTCAAAACAATCTCACTGAACTGTGGGCTTTGATGTATTTTTGTATGCCTTCAGTCTTTCTGAAACTGGACGAGTTCCTTTTGACATTCAAGGAAGCTGGAGATCCTTCGTCAGGCTATAATACAGCTGAAGTCATAGAACAACTCAAAAGCTTAAAATGCATATTGGGGGCTTTCATGCTCCGACGCACAAAATCTAAACTCATCAAGATTGGAGATCTATTCCTGCCATCCCTTACTGAGATAACAGTGCTGGCACCACTGGTCAGCTTGCAAAAGAAGGTGTACATGTCAATATTGAGGAAGGAGCTTCCTAAGCTACTTGCACTATCTTCTGGAGGTTCAAATCATCAATCCTTACAGAATATTGTGATACAGTTGCGAAAAGCATGTAGCCATCCTTATCTCTTCCCTGGTATTGAGCCAGAACCATATGAAGAGGGTGAACACCTGATTCAGGCTAGCGGCAAACTTATGATTTTGGATCGACTACTTGAGAAGCTGCATGAGCAGGGACACCGTGTCCTTCTCTTTGCTCAGATGACGCATACACTCGACGTTCTACAGGATTTTCTTGAGTTGCGAAAATATTCCTATGAGCGCCTTGATGGATCAATTCGGGCTGAGGAGCGGTTTGCTGCTATAAGAAGTTTCAGCAGGCAATCAGCAAAACAAAGTTTGAAATCTCTAGCTGATCAAAATGATGCTTTTGTCTTCATGATCTCCACTAGAGCTGGGGGAGTTGGCTTGAATCTTGTTGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCCCAGGTTGATAAGCAAGCTCTGCAGCGGGCACACAGGATTGGTCAATTAAATTCTGTGCTGTCGATAAACCTAGTTACCGGACGTACAGTGGAGGAGGTTATCATGCGGAGAGCAGAAAGGAAGTTGCAGCTTAGCCATAATGTTATTGGGGATGATGTTATGGACGAGGAAGGTAAAGAGACAGCAGGAGTTGAACCTAGTGACCTGCGATCTATCATATTTGGGTTACATCTGTTTGATCCTGCTGAAATCAACAATGGTGAGTGTGAGATTTCAGAATTGAATGCTTTGGCCAAGAAGGCGATTTCAGTGCGCGATAAAGAAACTGCAACCAAGGATGAGAGGAAATTTGAGGTCAGTCCAACAGATGTATTGAGTGGACAAGATCTGGTTGTAGGAGAAAGTTCTACTTCTCTCTGTTTAAATACTAGTTTCGATGAAGCTTCATATCTGTCCTGGGTTGAGAAATTTAAGGAGGTACCACAAGCAAATAGCAATGAAAATACAGATATGGGAAGTCGAAGAAACATACCCGAGGAAAGGCGTCTAAAACTTGAGGCTGCAAAAAAAAGAGCAGAGGAGAAGAAGTTATATAGGTGGGTAGACCTTGGCTACCAATCATTGTCTGTTGAGGACCCTATCAGTCCTGTTGATAGGGACATCATGTCCGACTCAGGTTCTGTCCAGTTTGTTTATGGCGATTGTACACAACCATCAAAAGTTTGTCCGTCTGAGCCTACCATTATTTTCAGCTGTGTTGATGATTCTGGACAGTGGGGTCATGGAGGAATGTTTAATGCACTGGAGAAGCTATCTGCAAGCGTCCCCGATGCATATCAACGAGCTTCTGAATTTGATGACCTGCATCTTGGTGATCTTCACCTTATAAGACTTGATGAGGATTCGAATGAACAGAAGATGGACAGCAATCCCCCTCGATGGGTGGCTTTAGCTGTTGTACAATCTTATAATCCCAGGCGTAAAGTACCCCGGAGCAAGATTTCTATTCCTGACTTGGAACGTTGCTTATCAAAGGCATCATTTTCAGCCGCTCAAAGTTCTGCTTCAATCCACATGCCACGTATTGGGTATCAAGATGCATCGGATCGTGCAGAATGGTATACAGTGGAACGGCTTCTACGAAAATATGCTTCTATCCATGGCATAAAGATTTGTGTGTATTATTATAGACGATCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

769

Amino Acids

87.13

Weight (kDa)

6.66

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	1 - 68	4.1e-14	SNF2-related domain
SNF2-rel_dom	PF00176	85 - 238	2.2e-22	SNF2-related domain
HDA2-3	PF11496	188 - 313	5.3e-06	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	259 - 383	5.2e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1994, 2076
AasI	GACNNNNNNGTC	1 cut(s)	1884
Acc36I	ACCTGC	2 cut(s)	1320, 1977
Acc65I	GGTACC	2 cut(s)	267, 1585
AccB1I	GGYRCC	3 cut(s)	267, 562, 1585
AccB7I	CCANNNNNTGG	1 cut(s)	2192
AccBSI	CCGCTC	3 cut(s)	265, 937, 2159
AccI	GTMKAC	2 cut(s)	1710, 2228
AccII	CGCG	1 cut(s)	1422
AciI	CCGC	6 cut(s)	265, 771, 937, 1132, 1213, 2157
AclI	AACGTT	1 cut(s)	2128
AclWI	GGATC	5 cut(s)	404, 798, 925, 1340, 2220
AcoI	YGGCCR	1 cut(s)	1398
AcsI	RAATTY	4 cut(s)	1156, 1454, 1574, 1958
AcuI	CTGAAG	2 cut(s)	342, 456
AcyI	GRCGYC	1 cut(s)	1651
AfaI	GTAC	9 cut(s)	156, 248, 269, 593, 1192, 1587, 1813, 2067, 2094
AfiI	CCNNNNNNNGG	6 cut(s)	419, 763, 1647, 2046, 2047, 2192
AflIII	ACRYGT	1 cut(s)	594
AhdI	GACNNNNNGTC	2 cut(s)	827, 1771
AhlI	ACTAGT	1 cut(s)	1535
AjnI	CCWGG	4 cut(s)	718, 1107, 1562, 2081
Alw26I	GTCTC	2 cut(s)	121, 1280
AlwI	GGATC	5 cut(s)	404, 798, 925, 1340, 2220
AlwNI	CAGNNNCTG	1 cut(s)	1787
Ama87I	CYCGRG	1 cut(s)	1640
AoxI	GGCC	1 cut(s)	1398
ApeKI	GCWGC	7 cut(s)	186, 808, 944, 1067, 1129, 1234, 1667
ApoI	RAATTY	4 cut(s)	1156, 1454, 1574, 1958
Asp700I	GAANNNNTTC	2 cut(s)	895, 2241
Asp718I	GGTACC	2 cut(s)	267, 1585
AspLEI	GCGC	3 cut(s)	186, 909, 1422
AspS9I	GGNCC	2 cut(s)	71, 1741
AsuC2I	CCSGG	1 cut(s)	2098
AsuHPI	GGTGA	5 cut(s)	179, 761, 1379, 1979, 1991
AsuII	TTCGAA	1 cut(s)	2012
AsuNHI	GCTAGC	1 cut(s)	767
AvaI	CYCGRG	1 cut(s)	1640
AvaII	GGWCC	2 cut(s)	71, 1741
BaeGI	GKGCMC	1 cut(s)	1138
BalI	TGGCCA	1 cut(s)	1400
BanI	GGYRCC	3 cut(s)	267, 562, 1585
BbsI	GAAGAC	1 cut(s)	1012
BbvCI	CCTCAGC	1 cut(s)	930
BbvI	GCAGC	7 cut(s)	198, 795, 931, 1054, 1141, 1246, 1654
BccI	CCATC	8 cut(s)	101, 118, 544, 711, 908, 1828, 2020, 2040
BceAI	ACGGC	1 cut(s)	2255
BcgI	CGANNNNNNTGC	2 cut(s)	1399, 1433
BciT130I	CCWGG	4 cut(s)	720, 1109, 1564, 2083
BclI	TGATCA	1 cut(s)	1000
BcnI	CCSGG	1 cut(s)	2098
BcoDI	GTCTC	2 cut(s)	121, 1280
BcuI	ACTAGT	1 cut(s)	1535
BfaI	CTAG	6 cut(s)	768, 995, 1035, 1178, 1305, 1536
BfmI	CTRYAG	2 cut(s)	869, 1127
BfoI	RGCGCY	1 cut(s)	910
BfuAI	ACCTGC	2 cut(s)	1320, 1977
BglI	GCCNNNNNGGC	1 cut(s)	1406
BglII	AGATCT	2 cut(s)	523, 1492
BisI	GCNGC	9 cut(s)	187, 772, 809, 945, 1068, 1130, 1235, 1668, 2157
BlpI	GCTNAGC	1 cut(s)	1238
BlsI	GCNGC	9 cut(s)	188, 773, 810, 946, 1069, 1131, 1236, 1669, 2158
Bme1390I	CCNGG	5 cut(s)	720, 1109, 1564, 2083, 2098
Bme18I	GGWCC	2 cut(s)	71, 1741
BmeRI	GACNNNNNGTC	2 cut(s)	827, 1771
BmeT110I	CYCGRG	1 cut(s)	1640
BmgT120I	GGNCC	2 cut(s)	71, 1741
BmiI	GGNNCC	4 cut(s)	269, 564, 1587, 1743
BmrFI	CCNGG	5 cut(s)	720, 1109, 1564, 2083, 2098
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	6 cut(s)	1000, 1927, 1981, 2153, 2194, 2216
BmtI	GCTAGC	1 cut(s)	771
BmuI	ACTGGG	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	1012
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	3 cut(s)	426, 663, 1931
Bpu10I	CCTNAGC	2 cut(s)	621, 930
Bpu1102I	GCTNAGC	1 cut(s)	1238
Bpu14I	TTCGAA	1 cut(s)	2012
BpuEI	CTTGAG	3 cut(s)	821, 902, 1682
BpuMI	CCSGG	1 cut(s)	2098
BsaAI	YACGTR	2 cut(s)	194, 2189
BsaBI	GATNNNNATC	2 cut(s)	1101, 1941
BsaHI	GRCGYC	1 cut(s)	1651
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	9 cut(s)	718, 1107, 1440, 1563, 1641, 1714, 2081, 2096, 2266
BsaWI	WCCGGW	1 cut(s)	1184
BsaXI	ACNNNNNCTCC	2 cut(s)	1679, 1709
Bsc4I	CCNNNNNNNGG	6 cut(s)	419, 763, 1647, 2046, 2047, 2192
Bse1I	ACTGG	6 cut(s)	12, 301, 378, 573, 1792, 1914
Bse3DI	GCAATG	1 cut(s)	1609
Bse8I	GATNNNNATC	2 cut(s)	1101, 1941
BseBI	CCWGG	4 cut(s)	720, 1109, 1564, 2083
BseDI	CCNNGG	9 cut(s)	718, 1107, 1440, 1563, 1641, 1714, 2081, 2096, 2266
BseGI	GGATG	4 cut(s)	536, 703, 1264, 1450
BseJI	GATNNNNATC	2 cut(s)	1101, 1941
BseLI	CCNNNNNNNGG	6 cut(s)	419, 763, 1647, 2046, 2047, 2192
BseMI	GCAATG	1 cut(s)	1609
BseMII	CTCAG	7 cut(s)	132, 243, 537, 857, 921, 1794, 1830
BseNI	ACTGG	6 cut(s)	12, 301, 378, 573, 1792, 1914
BseRI	GAGGAG	3 cut(s)	947, 1214, 1700
BseSI	GKGCMC	1 cut(s)	1138
BseXI	GCAGC	7 cut(s)	198, 795, 931, 1054, 1141, 1246, 1654
BseYI	CCCAGC	1 cut(s)	1040
BsgI	GTGCAG	1 cut(s)	2238
Bsh1236I	CGCG	1 cut(s)	1422
BshFI	GGCC	1 cut(s)	1400
BshNI	GGYRCC	3 cut(s)	267, 562, 1585
BsiHKCI	CYCGRG	1 cut(s)	1640
BsiSI	CCGG	2 cut(s)	1185, 2098
BslFI	GGGAC	4 cut(s)	18, 834, 1778, 1916
BslI	CCNNNNNNNGG	6 cut(s)	419, 763, 1647, 2046, 2047, 2192
BsmAI	GTCTC	2 cut(s)	121, 1280
BsmFI	GGGAC	4 cut(s)	18, 834, 1778, 1916
BsmI	GAATGC	2 cut(s)	223, 1396
BsnI	GGCC	1 cut(s)	1400
Bso31I	GGTCTC	1 cut(s)	121
BsoBI	CYCGRG	1 cut(s)	1640
Bsp119I	TTCGAA	1 cut(s)	2012
Bsp1286I	GDGCHC	1 cut(s)	1138
Bsp1407I	TGTACA	4 cut(s)	246, 591, 1811, 2065
Bsp1720I	GCTNAGC	1 cut(s)	1238
Bsp19I	CCATGG	1 cut(s)	2266
BspACI	CCGC	6 cut(s)	265, 771, 937, 1132, 1213, 2157
BspANI	GGCC	1 cut(s)	1400
BspCNI	CTCAG	7 cut(s)	131, 242, 538, 856, 922, 1793, 1831
BspFNI	CGCG	1 cut(s)	1422
BspHI	TCATGA	1 cut(s)	1023
BspLI	GGNNCC	4 cut(s)	269, 564, 1587, 1743
BspMAI	CTGCAG	1 cut(s)	1131
BspMI	ACCTGC	2 cut(s)	1320, 1977
BspOI	GCTAGC	1 cut(s)	771
BspPI	GGATC	5 cut(s)	404, 798, 925, 1340, 2220
BspT104I	TTCGAA	1 cut(s)	2012
BspT107I	GGYRCC	3 cut(s)	267, 562, 1585
BspTNI	GGTCTC	1 cut(s)	121
BsrBI	CCGCTC	3 cut(s)	265, 937, 2159
BsrDI	GCAATG	1 cut(s)	1609
BsrGI	TGTACA	4 cut(s)	246, 591, 1811, 2065
BsrI	ACTGG	6 cut(s)	12, 301, 378, 573, 1792, 1914
BssECI	CCNNGG	9 cut(s)	718, 1107, 1440, 1563, 1641, 1714, 2081, 2096, 2266
BssNAI	GTATAC	1 cut(s)	2229
BssNI	GRCGYC	1 cut(s)	1651
BssT1I	CCWWGG	3 cut(s)	1440, 1714, 2266
Bst1107I	GTATAC	1 cut(s)	2229
Bst2UI	CCWGG	4 cut(s)	720, 1109, 1564, 2083
Bst4CI	ACNGT	9 cut(s)	159, 330, 556, 684, 827, 1078, 1195, 1881, 2233
Bst6I	CTCTTC	2 cut(s)	719, 738
BstACI	GRCGYC	1 cut(s)	1651
BstAPI	GCANNNNNTGC	1 cut(s)	1126
BstAUI	TGTACA	4 cut(s)	246, 591, 1811, 2065
BstBAI	YACGTR	2 cut(s)	194, 2189
BstBI	TTCGAA	1 cut(s)	2012
BstC8I	GCNNGC	8 cut(s)	24, 561, 578, 769, 965, 1122, 1134, 1927
BstDSI	CCRYGG	1 cut(s)	2266
BstENI	CCTNNNNNAGG	2 cut(s)	417, 761
BstF5I	GGATG	4 cut(s)	536, 703, 1264, 1450
BstFNI	CGCG	1 cut(s)	1422
BstH2I	RGCGCY	1 cut(s)	910
BstHHI	GCGC	3 cut(s)	186, 909, 1422
BstMAI	GTCTC	2 cut(s)	121, 1280
BstMWI	GCNNNNNNNGC	5 cut(s)	465, 622, 814, 1126, 1406
BstNI	CCWGG	4 cut(s)	720, 1109, 1564, 2083
BstNSI	RCATGY	4 cut(s)	215, 598, 699, 2185
BstSCI	CCNGG	5 cut(s)	718, 1107, 1562, 2081, 2096
BstSFI	CTRYAG	2 cut(s)	869, 1127
BstSLI	GKGCMC	1 cut(s)	1138
BstSNI	TACGTA	1 cut(s)	194
BstUI	CGCG	1 cut(s)	1422
BstV1I	GCAGC	7 cut(s)	198, 795, 931, 1054, 1141, 1246, 1654
BstV2I	GAAGAC	1 cut(s)	1012
BstX2I	RGATCY	3 cut(s)	409, 523, 1492
BstYI	RGATCY	3 cut(s)	409, 523, 1492
BstZ17I	GTATAC	1 cut(s)	2229
BsuRI	GGCC	1 cut(s)	1400
BtgI	CCRYGG	1 cut(s)	2266
BtsCI	GGATG	4 cut(s)	536, 703, 1264, 1450
BtsIMutI	CAGTG	8 cut(s)	321, 561, 566, 1200, 1422, 1886, 1907, 2238
BveI	ACCTGC	2 cut(s)	1320, 1977
Cac8I	GCNNGC	8 cut(s)	24, 561, 578, 769, 965, 1122, 1134, 1927
CaiI	CAGNNNCTG	1 cut(s)	1787
CciI	TCATGA	1 cut(s)	1023
CfoI	GCGC	3 cut(s)	186, 909, 1422
Cfr13I	GGNCC	2 cut(s)	71, 1741
CseI	GACGC	4 cut(s)	501, 859, 1640, 1918
Csp6I	GTAC	9 cut(s)	155, 247, 268, 592, 1191, 1586, 1812, 2066, 2093
CviQI	GTAC	9 cut(s)	155, 247, 268, 592, 1191, 1586, 1812, 2066, 2093
DraI	TTTAAA	1 cut(s)	1530
DrdI	GACNNNNNNGTC	1 cut(s)	1884
DriI	GACNNNNNGTC	2 cut(s)	827, 1771
DseDI	GACNNNNNNGTC	1 cut(s)	1884
EaeI	YGGCCR	1 cut(s)	1398
Eam1104I	CTCTTC	2 cut(s)	719, 738
Eam1105I	GACNNNNNGTC	2 cut(s)	827, 1771
EarI	CTCTTC	2 cut(s)	719, 738
Eco105I	TACGTA	1 cut(s)	194
Eco130I	CCWWGG	3 cut(s)	1440, 1714, 2266
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	71, 1741
Eco57I	CTGAAG	2 cut(s)	342, 456
Eco88I	CYCGRG	1 cut(s)	1640
EcoNI	CCTNNNNNAGG	2 cut(s)	417, 761
EcoO109I	RGGNCCY	1 cut(s)	1741
EcoRII	CCWGG	4 cut(s)	718, 1107, 1562, 2081
EcoT14I	CCWWGG	3 cut(s)	1440, 1714, 2266
EcoT22I	ATGCAT	3 cut(s)	470, 1942, 2209
ErhI	CCWWGG	3 cut(s)	1440, 1714, 2266
FalI	AAGNNNNNCTT	4 cut(s)	1501, 1533, 2155, 2187
FaqI	GGGAC	4 cut(s)	18, 834, 1778, 1916
FauI	CCCGC	1 cut(s)	1125
FauNDI	CATATG	1 cut(s)	739
FbaI	TGATCA	1 cut(s)	1000
FblI	GTMKAC	2 cut(s)	1710, 2228
Fnu4HI	GCNGC	9 cut(s)	187, 772, 809, 945, 1068, 1130, 1235, 1668, 2157
FokI	GGATG	4 cut(s)	523, 690, 1271, 1457
Fsp4HI	GCNGC	9 cut(s)	187, 772, 809, 945, 1068, 1130, 1235, 1668, 2157
FspBI	CTAG	6 cut(s)	768, 995, 1035, 1178, 1305, 1536
GlaI	GCGC	3 cut(s)	185, 908, 1421
GluI	GCNGC	9 cut(s)	187, 772, 809, 945, 1068, 1130, 1235, 1668, 2157
GsaI	CCCAGC	1 cut(s)	1044
GsuI	CTGGAG	3 cut(s)	426, 663, 1931
HaeII	RGCGCY	1 cut(s)	910
HaeIII	GGCC	1 cut(s)	1400
HapII	CCGG	2 cut(s)	1185, 2098
HgaI	GACGC	4 cut(s)	501, 859, 1640, 1918
HhaI	GCGC	3 cut(s)	186, 909, 1422
Hin1I	GRCGYC	1 cut(s)	1651
Hin6I	GCGC	3 cut(s)	184, 907, 1420
HinP1I	GCGC	3 cut(s)	184, 907, 1420
HindIII	AAGCTT	2 cut(s)	457, 1548
HinfI	GANTC	7 cut(s)	16, 760, 1057, 1102, 1778, 1871, 2009
HpaII	CCGG	2 cut(s)	1185, 2098
HphI	GGTGA	5 cut(s)	179, 761, 1379, 1979, 1991
Hpy166II	GTNNAC	6 cut(s)	592, 752, 1487, 1711, 1814, 2229
Hpy188I	TCNGA	9 cut(s)	121, 369, 491, 846, 1384, 1777, 1840, 1957, 2212
Hpy188III	TCNNGA	7 cut(s)	514, 642, 881, 1024, 1875, 2117, 2201
Hpy8I	GTNNAC	6 cut(s)	592, 752, 1487, 1711, 1814, 2229
Hpy99I	CGWCG	2 cut(s)	495, 866
HpyAV	CCTTC	9 cut(s)	43, 276, 366, 423, 580, 604, 842, 1271, 1399
HpyCH4III	ACNGT	9 cut(s)	159, 330, 556, 684, 827, 1078, 1195, 1881, 2233
HpyCH4IV	ACGT	5 cut(s)	193, 864, 1189, 2128, 2188
HpyF10VI	GCNNNNNNNGC	5 cut(s)	465, 622, 814, 1126, 1406
HpySE526I	ACGT	5 cut(s)	193, 864, 1189, 2128, 2188
Hsp92I	GRCGYC	1 cut(s)	1651
HspAI	GCGC	3 cut(s)	184, 907, 1420
KpnI	GGTACC	2 cut(s)	271, 1589
Ksp22I	TGATCA	1 cut(s)	1000
LmnI	GCTCC	5 cut(s)	142, 492, 613, 934, 2100
Lsp1109I	GCAGC	7 cut(s)	198, 795, 931, 1054, 1141, 1246, 1654
LweI	GCATC	6 cut(s)	1000, 1927, 1981, 2153, 2194, 2216
MaeI	CTAG	6 cut(s)	768, 995, 1035, 1178, 1305, 1536
MaeII	ACGT	5 cut(s)	193, 864, 1189, 2128, 2188
MaeIII	GTNAC	6 cut(s)	63, 100, 285, 1180, 1307, 1332
MbiI	CCGCTC	3 cut(s)	265, 937, 2159
MboII	GAAGA	8 cut(s)	630, 706, 755, 1012, 1641, 1702, 1976, 2035
MflI	RGATCY	3 cut(s)	409, 523, 1492
MhlI	GDGCHC	1 cut(s)	1138
MlsI	TGGCCA	1 cut(s)	1400
MluCI	AATT	7 cut(s)	921, 1151, 1156, 1385, 1454, 1574, 1958
MluNI	TGGCCA	1 cut(s)	1400
MlyI	GAGTC	2 cut(s)	10, 1772
MmeI	TCCRAC	3 cut(s)	514, 1493, 1800
Mox20I	TGGCCA	1 cut(s)	1400
Mph1103I	ATGCAT	3 cut(s)	470, 1942, 2209
MroXI	GAANNNNTTC	2 cut(s)	895, 2241
MscI	TGGCCA	1 cut(s)	1400
MseI	TTAA	5 cut(s)	461, 1154, 1529, 1578, 1902
MslI	CAYNNNNRTG	1 cut(s)	1977
Msp20I	TGGCCA	1 cut(s)	1400
MspA1I	CMGCKG	3 cut(s)	434, 1132, 1860
MspI	CCGG	2 cut(s)	1185, 2098
MspR9I	CCNGG	5 cut(s)	720, 1109, 1564, 2083, 2098
Mva1269I	GAATGC	2 cut(s)	223, 1396
MvaI	CCWGG	4 cut(s)	720, 1109, 1564, 2083
MvnI	CGCG	1 cut(s)	1422
MwoI	GCNNNNNNNGC	5 cut(s)	465, 622, 814, 1126, 1406
NciI	CCSGG	1 cut(s)	2098
NcoI	CCATGG	1 cut(s)	2266
NdeI	CATATG	1 cut(s)	739
NheI	GCTAGC	1 cut(s)	767
NlaIV	GGNNCC	4 cut(s)	269, 564, 1587, 1743
NmuCI	GTSAC	3 cut(s)	63, 100, 1307
NsiI	ATGCAT	3 cut(s)	470, 1942, 2209
NspI	RCATGY	4 cut(s)	215, 598, 699, 2185
NspV	TTCGAA	1 cut(s)	2012
PagI	TCATGA	1 cut(s)	1023
PciI	ACATGT	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	2245
PctI	GAATGC	2 cut(s)	223, 1396
PdmI	GAANNNNTTC	2 cut(s)	895, 2241
PfeI	GAWTC	5 cut(s)	760, 1057, 1102, 1871, 2009
PflMI	CCANNNNNTGG	1 cut(s)	2192
PkrI	GCNGC	9 cut(s)	188, 773, 810, 946, 1069, 1131, 1236, 1669, 2158
PleI	GAGTC	2 cut(s)	10, 1772
PpsI	GAGTC	2 cut(s)	10, 1772
Ppu21I	YACGTR	2 cut(s)	194, 2189
PpuMI	RGGWCCY	1 cut(s)	1741
PscI	ACATGT	1 cut(s)	594
PsiI	TTATAA	2 cut(s)	1994, 2076
Psp1406I	AACGTT	1 cut(s)	2128
Psp5II	RGGWCCY	1 cut(s)	1741
Psp6I	CCWGG	4 cut(s)	718, 1107, 1562, 2081
PspFI	CCCAGC	1 cut(s)	1040
PspGI	CCWGG	4 cut(s)	718, 1107, 1562, 2081
PspN4I	GGNNCC	4 cut(s)	269, 564, 1587, 1743
PspPI	GGNCC	2 cut(s)	71, 1741
PspPPI	RGGWCCY	1 cut(s)	1741
PsrI	GAACNNNNNNTAC	4 cut(s)	225, 257, 2229, 2261
PstI	CTGCAG	1 cut(s)	1131
PstNI	CAGNNNCTG	1 cut(s)	1787
PsuI	RGATCY	3 cut(s)	409, 523, 1492
PvuII	CAGCTG	2 cut(s)	434, 1860
RsaI	GTAC	9 cut(s)	156, 248, 269, 593, 1192, 1587, 1813, 2067, 2094
RsaNI	GTAC	9 cut(s)	155, 247, 268, 592, 1191, 1586, 1812, 2066, 2093
RseI	CAYNNNNRTG	1 cut(s)	1977
SaqAI	TTAA	5 cut(s)	461, 1154, 1529, 1578, 1902
SatI	GCNGC	9 cut(s)	187, 772, 809, 945, 1068, 1130, 1235, 1668, 2157
Sau96I	GGNCC	2 cut(s)	71, 1741
SchI	GAGTC	2 cut(s)	10, 1772
ScrFI	CCNGG	5 cut(s)	720, 1109, 1564, 2083, 2098
SduI	GDGCHC	1 cut(s)	1138
SfaNI	GCATC	6 cut(s)	1000, 1927, 1981, 2153, 2194, 2216
SfcI	CTRYAG	2 cut(s)	869, 1127
SfuI	TTCGAA	1 cut(s)	2012
SinI	GGWCC	2 cut(s)	71, 1741
SmiMI	CAYNNNNRTG	1 cut(s)	1977
SmlI	CTYRAG	3 cut(s)	800, 881, 1661
SmoI	CTYRAG	3 cut(s)	800, 881, 1661
SnaBI	TACGTA	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	1535
Sse9I	AATT	7 cut(s)	921, 1151, 1156, 1385, 1454, 1574, 1958
SsiI	CCGC	6 cut(s)	265, 771, 937, 1132, 1213, 2157
SspI	AATATT	3 cut(s)	603, 673, 896
SspMI	CTAG	6 cut(s)	768, 995, 1035, 1178, 1305, 1536
StyD4I	CCNGG	5 cut(s)	718, 1107, 1562, 2081, 2096
StyI	CCWWGG	3 cut(s)	1440, 1714, 2266
TaaI	ACNGT	9 cut(s)	159, 330, 556, 684, 827, 1078, 1195, 1881, 2233
TaiI	ACGT	5 cut(s)	196, 867, 1192, 2131, 2191
TaqI	TCGA	7 cut(s)	793, 861, 1169, 1542, 1627, 2012, 2044
TasI	AATT	7 cut(s)	921, 1151, 1156, 1385, 1454, 1574, 1958
TatI	WGTACW	4 cut(s)	246, 591, 1811, 2065
TauI	GCSGC	2 cut(s)	774, 2159
TfiI	GAWTC	5 cut(s)	760, 1057, 1102, 1871, 2009
Tru1I	TTAA	5 cut(s)	461, 1154, 1529, 1578, 1902
Tru9I	TTAA	5 cut(s)	461, 1154, 1529, 1578, 1902
TscAI	CASTG	8 cut(s)	328, 561, 573, 1200, 1422, 1886, 1914, 2238
TseFI	GTSAC	3 cut(s)	63, 100, 1307
TseI	GCWGC	7 cut(s)	186, 808, 944, 1067, 1129, 1234, 1667
Tsp45I	GTSAC	3 cut(s)	63, 100, 1307
TspDTI	ATGAA	7 cut(s)	472, 756, 1012, 1542, 1560, 1620, 2031
TspGWI	ACGGA	1 cut(s)	1824
TspRI	CASTG	8 cut(s)	328, 561, 573, 1200, 1422, 1886, 1914, 2238
Van91I	CCANNNNNTGG	1 cut(s)	2192
VpaK11BI	GGWCC	2 cut(s)	71, 1741
XagI	CCTNNNNNAGG	2 cut(s)	417, 761
XapI	RAATTY	4 cut(s)	1156, 1454, 1574, 1958
XceI	RCATGY	4 cut(s)	215, 598, 699, 2185
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1250, 1799
XmiI	GTMKAC	2 cut(s)	1710, 2228
XmnI	GAANNNNTTC	2 cut(s)	895, 2241
XspI	CTAG	6 cut(s)	768, 995, 1035, 1178, 1305, 1536
Zsp2I	ATGCAT	3 cut(s)	470, 1942, 2209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.