Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Forward (+)

36726835 .. 36734904

Gene Structure 8070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGAATTACGAGAAGAGGCTCAGAGCCGCGGCGGAGTTCATACTCGCCGACGACGCACGCGCCGGAGACGCGCGTGTCAGCGCCGGAGAGCTCGGCGTGACGGCGACGCTGAAGCCGCACCAAGTCGAAGGCGTCTCGTGGCTCATACGGCGGTACAACCTCGGCGTCAACGTCGTTCTCGGAGATGAGATGGGACTGGGAAAGACTCTACAAGCTGTCGCTTTATTGAGCTATTTGAAGGTTCAAAAGATGTCACGTGGACCATTCTTGGTGTTGTGTCCTCTAAGTGTGACTGATGGTTGGGTCTCGGAGATGGAAAACTTTGCTCCAAAATTAAAATTTGTACGGTTTGTTGGTGATAAAGAATATAGGCTCAGCTTACGCAGGACAATATATGAGCATGTGAAAGTGCATTCCTCGGTATCTGATATGTTGTCGTTACCTTTTGATGTCCTGTTGACAACATATGACATCGCGTTGGCCGATCAGGATTTCCTTTCTCAAATACCATGGAACTATGCAGTAATTGATGAAGCGCAAAGGCTTAAAAACCCTTCCAGTGTTCTGTACAATGTCCTAAGAGAGCGGTATCTCATTCCAAGAAGGTTACTGATGACTGGCACACCTATTCAAAACAATCTCACTGAACTGTGGGCTTTGATGTATTTTTGTATGCCTTCAGTCTTTCTGAAACTGGACGAGTTCCTTGTTACATTCAAGGAAGCTGGAGATCCTTCGTCAGGATATAATACAGCTGAAGTCATAGAACAACTCAAAAGCTTAAAACGCATACTGGGGGCTTTCATGCTCCGGCGCACAAAATCTAAACTCATCGAGATTGGAGATCTATTCCTGCCACCCCTTACTGAGATAACTGTGCTGGCACCACTGGTCAGCTTGCAAAAGAAGGTGTACATGTCAATATTGAGGAAGGAGCTTCCTAAGCTACTTGCACTATCTTCTGGAGGTTCAAATCATCAATCCTTACAGAATATTGTAGTACAGTTGCGAAAAGCATGTAGCCATCCTTATCTCTTCCCTGGTATTGAGCCAGAACCATATGAAGAGGGTGAACACCTGATTCAGGCTAGCGGTAAACTTATGATTTTGGATCGACTACTTCGGAAGCTGCATGAGCAGGGACACCGTGTCCTTCTCTTTGCTCAGATGACGCATACACTCGACGTTCTACAGGATTTTCTTGAGTTGCGAAAATATTCCTATGAGCGCCTTGATGGATCAATTCGGGCTGAGGAGCGGTTTGCTGCTATAAGAAGTTTCAGCAGGCAATCAGCAAAACAAAGTTTGAAGTCCCAAGCTGATCAAAATGATGCTTTTGTCTTCATGATCTCCACTAGAGCTGGGGGAGTTGGCTTGAATCTTGTCGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCCCAGGTTGATAAGCAAGCTTTGCAGCGGGCACACAGGATTGGTCAATTAAATTCTGTGCTGTCAATAAACCTAGTTACCGGACGTACAGTGGAGGAGGTTATCATGCGGAGAGCAGAAAGGAAGTTGCAGCTTAGCCATAATGTTATTGGGGATGATGTTATGGACGAGGAAGGTAAAGAGACAGCAGGAGTTGAACCTAGTGACCTGCGATCTATCATATTTGGGTTACATCTGTTTGATCCTGCTGAAGTCAACAATAGTGAGTGTGAGATTTCAGAATTGGATGCTTTGGCCGAGAAGGCGATTTCAGTGCGCAATAAAGAAACAGCAACCAAGGATGAGAGGAAATTTGAGGTCGGTCCAACGGATGTATTGAATGGACAAGATCTGGTTGCAGGAGGAAGTTCTACTTCTCTCAGTTTAAATACTAGTTTCGATGAAGATTTATATCTCTCCTGGGTTGAGAAATTCAAGGAGGTACCACAAGCAAATAGCAATGAAAATTCAGATATGGGAAGCCGAAGAAACTTACCCGAGGAAAGGCGTCTAAAACTTGAGGCTGCAAAAAAAAGAGCAGAGGAAAAGAAGTTATCTAGGTGGGTAGACCTGGGCTACCAATCACTGTCTGTTGAGGAGCCTATCAGTCCTGTTGATGGGGACATCATGTCCGACTCAGGTTCTGTCCAGTTTGTTTATGGAGATTGTACACAACCATCAAAAGTTTGTCCCTCTGAGCCTACCATTATTTTCAGCTGTGTTGATGATTCTGGACAGTGGGGTCATGGAGGAATGTTTAATGCACTGGAGAGGCTATCTGCAAGTGTCCCCGATGCATATCAACGAGCTTCTGAATTTAACGACCTGCATCTTGGTGATCTTCACCTTATAAGACTTGATGAGGATTCGAATGAACAGAAGATGGACAGCAATCCCCCTCGATGGGTGGCTTTAGCTGTTGTACAATCTTATAATCCCAGGCGTAAAGTACCCCGGAGCAAGATTTCTATTCCTGACTTGGAACGTTGCTTATCAAAGGCATCATTTTCAGCCGCCCAAAGTTCTGCTTCAATCCACATGCCACGTATTGGGTATCAAGATGCATCGGATCGTGCAGAATGGTATACGGTGGAACGTCTTCTACGAAAATATGCTTCTATCCATGGCATAAAGATTTATGTGTATTATTATAGACGATCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

876

Amino Acids

98.84

Weight (kDa)

6.1

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	40 - 345	1.5e-65	SNF2-related domain
Helicase_C	PF00271	366 - 490	5.9e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2315, 2397
AasI	GACNNNNNNGTC	2 cut(s)	74, 2205
Acc16I	TGCGCA	1 cut(s)	1742
Acc36I	ACCTGC	2 cut(s)	1641, 2298
Acc65I	GGTACC	1 cut(s)	1906
AccB1I	GGYRCC	2 cut(s)	883, 1906
AccB7I	CCANNNNNTGG	1 cut(s)	2513
AccBSI	CCGCTC	2 cut(s)	586, 1258
AccI	GTMKAC	2 cut(s)	2031, 2549
AccII	CGCG	5 cut(s)	29, 60, 71, 73, 476
AclI	AACGTT	1 cut(s)	2449
AclWI	GGATC	5 cut(s)	725, 1119, 1246, 1661, 2541
AcoI	YGGCCR	2 cut(s)	480, 1719
AcsI	RAATTY	6 cut(s)	338, 1477, 1775, 1895, 1930, 2279
AcuI	CTGAAG	4 cut(s)	131, 663, 777, 1695
AcvI	CACGTG	1 cut(s)	257
AcyI	GRCGYC	3 cut(s)	132, 165, 1972
AfiI	CCNNNNNNNGG	7 cut(s)	740, 1084, 1968, 2081, 2367, 2368, 2513
AflIII	ACRYGT	1 cut(s)	915
AhdI	GACNNNNNGTC	2 cut(s)	1148, 2092
AhlI	ACTAGT	1 cut(s)	1856
AjnI	CCWGG	5 cut(s)	1039, 1428, 1883, 2034, 2402
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	4 cut(s)	60, 139, 310, 1601
AlwI	GGATC	5 cut(s)	725, 1119, 1246, 1661, 2541
AlwNI	CAGNNNCTG	1 cut(s)	2108
Ama87I	CYCGRG	1 cut(s)	1961
AoxI	GGCC	2 cut(s)	480, 1719
ApeKI	GCWGC	6 cut(s)	1129, 1265, 1388, 1450, 1555, 1988
ApoI	RAATTY	6 cut(s)	338, 1477, 1775, 1895, 1930, 2279
Asp700I	GAANNNNTTC	2 cut(s)	1216, 2562
Asp718I	GGTACC	1 cut(s)	1906
AspLEI	GCGC	7 cut(s)	62, 73, 83, 538, 816, 1230, 1743
AspS9I	GGNCC	2 cut(s)	260, 1787
AsuC2I	CCSGG	1 cut(s)	2419
AsuHPI	GGTGA	4 cut(s)	368, 1082, 2300, 2312
AsuII	TTCGAA	1 cut(s)	2333
AsuNHI	GCTAGC	1 cut(s)	1088
AvaI	CYCGRG	1 cut(s)	1961
AvaII	GGWCC	2 cut(s)	260, 1787
BaeGI	GKGCMC	1 cut(s)	1459
BanI	GGYRCC	2 cut(s)	883, 1906
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	1333, 2555
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	1251
BbvI	GCAGC	6 cut(s)	1116, 1252, 1375, 1462, 1567, 1975
BccI	CCATC	9 cut(s)	184, 290, 307, 1032, 1229, 2075, 2149, 2341, 2361
BceAI	ACGGC	2 cut(s)	117, 164
BcgI	CGANNNNNNTGC	2 cut(s)	1720, 1754
BciT130I	CCWGG	5 cut(s)	1041, 1430, 1885, 2036, 2404
BclI	TGATCA	1 cut(s)	1321
BcnI	CCSGG	1 cut(s)	2419
BcoDI	GTCTC	4 cut(s)	60, 139, 310, 1601
BcuI	ACTAGT	1 cut(s)	1856
BfaI	CTAG	6 cut(s)	1089, 1356, 1499, 1626, 1857, 2022
BfmI	CTRYAG	1 cut(s)	1190
BfoI	RGCGCY	2 cut(s)	84, 1231
BfuAI	ACCTGC	2 cut(s)	1641, 2298
BglI	GCCNNNNNGGC	1 cut(s)	1727
BglII	AGATCT	2 cut(s)	844, 1813
BlpI	GCTNAGC	2 cut(s)	374, 1559
Bme1390I	CCNGG	6 cut(s)	1041, 1430, 1885, 2036, 2404, 2419
Bme18I	GGWCC	2 cut(s)	260, 1787
BmeRI	GACNNNNNGTC	2 cut(s)	1148, 2092
BmeT110I	CYCGRG	1 cut(s)	1961
BmgT120I	GGNCC	2 cut(s)	260, 1787
BmiI	GGNNCC	3 cut(s)	885, 1908, 2064
BmrFI	CCNGG	6 cut(s)	1041, 1430, 1885, 2036, 2404, 2419
BmrI	ACTGGG	2 cut(s)	206, 803
BmsI	GCATC	7 cut(s)	1321, 1702, 2248, 2302, 2474, 2515, 2537
BmtI	GCTAGC	1 cut(s)	1092
BmuI	ACTGGG	2 cut(s)	206, 803
BpiI	GAAGAC	2 cut(s)	1333, 2555
BpmI	CTGGAG	3 cut(s)	747, 984, 2252
Bpu10I	CCTNAGC	2 cut(s)	942, 1251
Bpu1102I	GCTNAGC	2 cut(s)	374, 1559
Bpu14I	TTCGAA	1 cut(s)	2333
BpuEI	CTTGAG	2 cut(s)	1223, 2003
BpuMI	CCSGG	1 cut(s)	2419
BsaAI	YACGTR	2 cut(s)	257, 2510
BsaBI	GATNNNNATC	3 cut(s)	1422, 1875, 2262
BsaHI	GRCGYC	3 cut(s)	132, 165, 1972
BsaI	GGTCTC	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	1505
Bsc4I	CCNNNNNNNGG	7 cut(s)	740, 1084, 1968, 2081, 2367, 2368, 2513
Bse1I	ACTGG	8 cut(s)	201, 558, 622, 699, 798, 894, 2113, 2235
Bse3DI	GCAATG	1 cut(s)	1930
Bse8I	GATNNNNATC	3 cut(s)	1422, 1875, 2262
BseBI	CCWGG	5 cut(s)	1041, 1430, 1885, 2036, 2404
BseGI	GGATG	5 cut(s)	1024, 1585, 1717, 1771, 1801
BseJI	GATNNNNATC	3 cut(s)	1422, 1875, 2262
BseLI	CCNNNNNNNGG	7 cut(s)	740, 1084, 1968, 2081, 2367, 2368, 2513
BseMI	GCAATG	1 cut(s)	1930
BseMII	CTCAG	8 cut(s)	34, 388, 858, 1178, 1242, 1858, 2115, 2151
BseNI	ACTGG	8 cut(s)	201, 558, 622, 699, 798, 894, 2113, 2235
BseRI	GAGGAG	3 cut(s)	1268, 1535, 2075
BseSI	GKGCMC	1 cut(s)	1459
BseXI	GCAGC	6 cut(s)	1116, 1252, 1375, 1462, 1567, 1975
BseYI	CCCAGC	1 cut(s)	1361
BsgI	GTGCAG	1 cut(s)	2559
Bsh1236I	CGCG	5 cut(s)	29, 60, 71, 73, 476
BshFI	GGCC	2 cut(s)	482, 1721
BshNI	GGYRCC	2 cut(s)	883, 1906
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	1961
BsiSI	CCGG	5 cut(s)	63, 84, 811, 1506, 2419
BslFI	GGGAC	6 cut(s)	207, 1155, 1297, 2099, 2139, 2237
BslI	CCNNNNNNNGG	7 cut(s)	740, 1084, 1968, 2081, 2367, 2368, 2513
BsmAI	GTCTC	4 cut(s)	60, 139, 310, 1601
BsmBI	CGTCTC	2 cut(s)	60, 139
BsmFI	GGGAC	6 cut(s)	207, 1155, 1297, 2099, 2139, 2237
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	482, 1721
Bso31I	GGTCTC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	1961
Bsp119I	TTCGAA	1 cut(s)	2333
Bsp1286I	GDGCHC	2 cut(s)	93, 1459
Bsp1407I	TGTACA	4 cut(s)	567, 912, 2132, 2386
Bsp1720I	GCTNAGC	2 cut(s)	374, 1559
Bsp19I	CCATGG	2 cut(s)	509, 2587
BspANI	GGCC	2 cut(s)	482, 1721
BspCNI	CTCAG	8 cut(s)	33, 387, 859, 1177, 1243, 1857, 2114, 2152
BspFNI	CGCG	5 cut(s)	29, 60, 71, 73, 476
BspHI	TCATGA	1 cut(s)	1344
BspLI	GGNNCC	3 cut(s)	885, 1908, 2064
BspMI	ACCTGC	2 cut(s)	1641, 2298
BspOI	GCTAGC	1 cut(s)	1092
BspPI	GGATC	5 cut(s)	725, 1119, 1246, 1661, 2541
BspT104I	TTCGAA	1 cut(s)	2333
BspT107I	GGYRCC	2 cut(s)	883, 1906
BspTNI	GGTCTC	1 cut(s)	310
BsrBI	CCGCTC	2 cut(s)	586, 1258
BsrDI	GCAATG	1 cut(s)	1930
BsrGI	TGTACA	4 cut(s)	567, 912, 2132, 2386
BsrI	ACTGG	8 cut(s)	201, 558, 622, 699, 798, 894, 2113, 2235
BssNAI	GTATAC	1 cut(s)	2550
BssNI	GRCGYC	3 cut(s)	132, 165, 1972
BssSI	CACGAG	1 cut(s)	136
BssT1I	CCWWGG	3 cut(s)	509, 1761, 2587
Bst1107I	GTATAC	1 cut(s)	2550
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	5 cut(s)	1041, 1430, 1885, 2036, 2404
Bst6I	CTCTTC	3 cut(s)	8, 1040, 1059
BstACI	GRCGYC	3 cut(s)	132, 165, 1972
BstAPI	GCANNNNNTGC	1 cut(s)	1447
BstAUI	TGTACA	4 cut(s)	567, 912, 2132, 2386
BstBAI	YACGTR	2 cut(s)	257, 2510
BstBI	TTCGAA	1 cut(s)	2333
BstC8I	GCNNGC	7 cut(s)	58, 882, 899, 1090, 1286, 1443, 1455
BstDSI	CCRYGG	3 cut(s)	27, 509, 2587
BstENI	CCTNNNNNAGG	2 cut(s)	738, 1082
BstF5I	GGATG	5 cut(s)	1024, 1585, 1717, 1771, 1801
BstFNI	CGCG	5 cut(s)	29, 60, 71, 73, 476
BstH2I	RGCGCY	2 cut(s)	84, 1231
BstHHI	GCGC	7 cut(s)	62, 73, 83, 538, 816, 1230, 1743
BstMAI	GTCTC	4 cut(s)	60, 139, 310, 1601
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 68, 115, 148, 786, 943, 1135, 1447, 1727
BstNI	CCWGG	5 cut(s)	1041, 1430, 1885, 2036, 2404
BstNSI	RCATGY	4 cut(s)	404, 919, 1020, 2506
BstSCI	CCNGG	6 cut(s)	1039, 1428, 1883, 2034, 2402, 2417
BstSFI	CTRYAG	1 cut(s)	1190
BstSLI	GKGCMC	1 cut(s)	1459
BstUI	CGCG	5 cut(s)	29, 60, 71, 73, 476
BstV1I	GCAGC	6 cut(s)	1116, 1252, 1375, 1462, 1567, 1975
BstV2I	GAAGAC	2 cut(s)	1333, 2555
BstX2I	RGATCY	3 cut(s)	730, 844, 1813
BstYI	RGATCY	3 cut(s)	730, 844, 1813
BstZ17I	GTATAC	1 cut(s)	2550
BsuRI	GGCC	2 cut(s)	482, 1721
BtgI	CCRYGG	3 cut(s)	27, 509, 2587
BtgZI	GCGATG	1 cut(s)	457
BtsCI	GGATG	5 cut(s)	1024, 1585, 1717, 1771, 1801
BtsIMutI	CAGTG	8 cut(s)	565, 642, 887, 1521, 1743, 2048, 2207, 2228
BveI	ACCTGC	2 cut(s)	1641, 2298
Cac8I	GCNNGC	7 cut(s)	58, 882, 899, 1090, 1286, 1443, 1455
CaiI	CAGNNNCTG	1 cut(s)	2108
CciI	TCATGA	1 cut(s)	1344
CfoI	GCGC	7 cut(s)	62, 73, 83, 538, 816, 1230, 1743
Cfr13I	GGNCC	2 cut(s)	260, 1787
Cfr42I	CCGCGG	1 cut(s)	30
CseI	GACGC	7 cut(s)	62, 77, 115, 121, 154, 1180, 1961
DraI	TTTAAA	1 cut(s)	1851
DrdI	GACNNNNNNGTC	2 cut(s)	74, 2205
DriI	GACNNNNNGTC	2 cut(s)	1148, 2092
DseDI	GACNNNNNNGTC	2 cut(s)	74, 2205
EaeI	YGGCCR	2 cut(s)	480, 1719
Eam1104I	CTCTTC	3 cut(s)	8, 1040, 1059
Eam1105I	GACNNNNNGTC	2 cut(s)	1148, 2092
EarI	CTCTTC	3 cut(s)	8, 1040, 1059
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	3 cut(s)	509, 1761, 2587
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	260, 1787
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	4 cut(s)	131, 663, 777, 1695
Eco72I	CACGTG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	1961
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	2 cut(s)	738, 1082
EcoRII	CCWGG	5 cut(s)	1039, 1428, 1883, 2034, 2402
EcoT14I	CCWWGG	3 cut(s)	509, 1761, 2587
EcoT22I	ATGCAT	2 cut(s)	2263, 2530
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	3 cut(s)	509, 1761, 2587
Esp3I	CGTCTC	2 cut(s)	60, 139
FalI	AAGNNNNNCTT	4 cut(s)	1822, 1854, 2476, 2508
FaqI	GGGAC	6 cut(s)	207, 1155, 1297, 2099, 2139, 2237
FauI	CCCGC	1 cut(s)	1446
FauNDI	CATATG	2 cut(s)	466, 1060
FbaI	TGATCA	1 cut(s)	1321
FblI	GTMKAC	2 cut(s)	2031, 2549
FokI	GGATG	5 cut(s)	1011, 1592, 1724, 1778, 1808
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	6 cut(s)	1089, 1356, 1499, 1626, 1857, 2022
FspI	TGCGCA	1 cut(s)	1742
GlaI	GCGC	7 cut(s)	61, 72, 82, 537, 815, 1229, 1742
GsaI	CCCAGC	1 cut(s)	1365
GsuI	CTGGAG	3 cut(s)	747, 984, 2252
HaeII	RGCGCY	2 cut(s)	84, 1231
HaeIII	GGCC	2 cut(s)	482, 1721
HapII	CCGG	5 cut(s)	63, 84, 811, 1506, 2419
HgaI	GACGC	7 cut(s)	62, 77, 115, 121, 154, 1180, 1961
HhaI	GCGC	7 cut(s)	62, 73, 83, 538, 816, 1230, 1743
Hin1I	GRCGYC	3 cut(s)	132, 165, 1972
Hin6I	GCGC	7 cut(s)	60, 71, 81, 536, 814, 1228, 1741
HinP1I	GCGC	7 cut(s)	60, 71, 81, 536, 814, 1228, 1741
HincII	GTYRAC	3 cut(s)	169, 459, 1681
HindII	GTYRAC	3 cut(s)	169, 459, 1681
HindIII	AAGCTT	2 cut(s)	778, 1443
HinfI	GANTC	7 cut(s)	205, 1081, 1378, 1423, 2099, 2192, 2330
HpaII	CCGG	5 cut(s)	63, 84, 811, 1506, 2419
HphI	GGTGA	4 cut(s)	368, 1082, 2300, 2312
Hpy99I	CGWCG	5 cut(s)	53, 56, 109, 176, 1187
HpyCH4IV	ACGT	7 cut(s)	171, 256, 1185, 1510, 2449, 2509, 2560
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 68, 115, 148, 786, 943, 1135, 1447, 1727
HpySE526I	ACGT	7 cut(s)	171, 256, 1185, 1510, 2449, 2509, 2560
Hsp92I	GRCGYC	3 cut(s)	132, 165, 1972
HspAI	GCGC	7 cut(s)	60, 71, 81, 536, 814, 1228, 1741
KpnI	GGTACC	1 cut(s)	1910
Ksp22I	TGATCA	1 cut(s)	1321
KspI	CCGCGG	1 cut(s)	30
LmnI	GCTCC	6 cut(s)	331, 813, 934, 1255, 2062, 2421
Lsp1109I	GCAGC	6 cut(s)	1116, 1252, 1375, 1462, 1567, 1975
LweI	GCATC	7 cut(s)	1321, 1702, 2248, 2302, 2474, 2515, 2537
MaeI	CTAG	6 cut(s)	1089, 1356, 1499, 1626, 1857, 2022
MaeII	ACGT	7 cut(s)	171, 256, 1185, 1510, 2449, 2509, 2560
MaeIII	GTNAC	9 cut(s)	97, 252, 289, 438, 606, 709, 1501, 1628, 1653
MbiI	CCGCTC	2 cut(s)	586, 1258
MflI	RGATCY	3 cut(s)	730, 844, 1813
MhlI	GDGCHC	2 cut(s)	93, 1459
MlyI	GAGTC	2 cut(s)	199, 2093
MmeI	TCCRAC	2 cut(s)	1814, 2121
Mph1103I	ATGCAT	2 cut(s)	2263, 2530
MroXI	GAANNNNTTC	2 cut(s)	1216, 2562
MseI	TTAA	7 cut(s)	335, 546, 782, 1475, 1850, 2223, 2283
MslI	CAYNNNNRTG	1 cut(s)	2298
MspA1I	CMGCKG	4 cut(s)	29, 755, 1453, 2181
MspI	CCGG	5 cut(s)	63, 84, 811, 1506, 2419
MspR9I	CCNGG	6 cut(s)	1041, 1430, 1885, 2036, 2404, 2419
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	5 cut(s)	1041, 1430, 1885, 2036, 2404
MvnI	CGCG	5 cut(s)	29, 60, 71, 73, 476
MwoI	GCNNNNNNNGC	9 cut(s)	53, 68, 115, 148, 786, 943, 1135, 1447, 1727
NciI	CCSGG	1 cut(s)	2419
NcoI	CCATGG	2 cut(s)	509, 2587
NdeI	CATATG	2 cut(s)	466, 1060
NheI	GCTAGC	1 cut(s)	1088
NlaIV	GGNNCC	3 cut(s)	885, 1908, 2064
NmeAIII	GCCGAG	3 cut(s)	72, 141, 1747
NmuCI	GTSAC	4 cut(s)	97, 252, 289, 1628
NsbI	TGCGCA	1 cut(s)	1742
NsiI	ATGCAT	2 cut(s)	2263, 2530
NspI	RCATGY	4 cut(s)	404, 919, 1020, 2506
NspV	TTCGAA	1 cut(s)	2333
PagI	TCATGA	1 cut(s)	1344
PciI	ACATGT	1 cut(s)	915
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 480, 2566
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	2 cut(s)	1216, 2562
PfeI	GAWTC	5 cut(s)	1081, 1378, 1423, 2192, 2330
PflMI	CCANNNNNTGG	1 cut(s)	2513
PleI	GAGTC	2 cut(s)	199, 2093
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
PpsI	GAGTC	2 cut(s)	199, 2093
Ppu21I	YACGTR	2 cut(s)	257, 2510
PscI	ACATGT	1 cut(s)	915
PsiI	TTATAA	2 cut(s)	2315, 2397
Psp124BI	GAGCTC	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	2449
Psp6I	CCWGG	5 cut(s)	1039, 1428, 1883, 2034, 2402
PspCI	CACGTG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	1361
PspGI	CCWGG	5 cut(s)	1039, 1428, 1883, 2034, 2402
PspN4I	GGNNCC	3 cut(s)	885, 1908, 2064
PspPI	GGNCC	2 cut(s)	260, 1787
PsrI	GAACNNNNNNTAC	2 cut(s)	2550, 2582
PstNI	CAGNNNCTG	1 cut(s)	2108
PsuI	RGATCY	3 cut(s)	730, 844, 1813
PvuII	CAGCTG	2 cut(s)	755, 2181
RseI	CAYNNNNRTG	1 cut(s)	2298
SacI	GAGCTC	1 cut(s)	93
SacII	CCGCGG	1 cut(s)	30
SaqAI	TTAA	7 cut(s)	335, 546, 782, 1475, 1850, 2223, 2283
Sau96I	GGNCC	2 cut(s)	260, 1787
SchI	GAGTC	2 cut(s)	199, 2093
ScrFI	CCNGG	6 cut(s)	1041, 1430, 1885, 2036, 2404, 2419
SduI	GDGCHC	2 cut(s)	93, 1459
SfaNI	GCATC	7 cut(s)	1321, 1702, 2248, 2302, 2474, 2515, 2537
SfcI	CTRYAG	1 cut(s)	1190
Sfr303I	CCGCGG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	2333
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	2 cut(s)	260, 1787
SmiMI	CAYNNNNRTG	1 cut(s)	2298
SmlI	CTYRAG	2 cut(s)	1202, 1982
SmoI	CTYRAG	2 cut(s)	1202, 1982
SpeI	ACTAGT	1 cut(s)	1856
SspI	AATATT	3 cut(s)	924, 994, 1217
SspMI	CTAG	6 cut(s)	1089, 1356, 1499, 1626, 1857, 2022
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	6 cut(s)	1039, 1428, 1883, 2034, 2402, 2417
StyI	CCWWGG	3 cut(s)	509, 1761, 2587
TaiI	ACGT	7 cut(s)	174, 259, 1188, 1513, 2452, 2512, 2563
TaqI	TCGA	7 cut(s)	126, 834, 1114, 1182, 1863, 2333, 2365
TaqII	GACCGA	1 cut(s)	1775
TatI	WGTACW	5 cut(s)	567, 912, 1000, 2132, 2386
TauI	GCSGC	4 cut(s)	29, 32, 118, 2480
TfiI	GAWTC	5 cut(s)	1081, 1378, 1423, 2192, 2330
Tru1I	TTAA	7 cut(s)	335, 546, 782, 1475, 1850, 2223, 2283
Tru9I	TTAA	7 cut(s)	335, 546, 782, 1475, 1850, 2223, 2283
TscAI	CASTG	8 cut(s)	565, 649, 894, 1521, 1743, 2055, 2207, 2235
TseFI	GTSAC	4 cut(s)	97, 252, 289, 1628
TseI	GCWGC	6 cut(s)	1129, 1265, 1388, 1450, 1555, 1988
Tsp45I	GTSAC	4 cut(s)	97, 252, 289, 1628
TspDTI	ATGAA	9 cut(s)	17, 28, 546, 793, 1077, 1333, 1881, 1941, 2352
TspGWI	ACGGA	1 cut(s)	1808
TspRI	CASTG	8 cut(s)	565, 649, 894, 1521, 1743, 2055, 2207, 2235
Van91I	CCANNNNNTGG	1 cut(s)	2513
VpaK11BI	GGWCC	2 cut(s)	260, 1787
XagI	CCTNNNNNAGG	2 cut(s)	738, 1082
XapI	RAATTY	6 cut(s)	338, 1477, 1775, 1895, 1930, 2279
XceI	RCATGY	4 cut(s)	404, 919, 1020, 2506
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1571, 2120
XmiI	GTMKAC	2 cut(s)	2031, 2549
XmnI	GAANNNNTTC	2 cut(s)	1216, 2562
XspI	CTAG	6 cut(s)	1089, 1356, 1499, 1626, 1857, 2022
Zsp2I	ATGCAT	2 cut(s)	2263, 2530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.