Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Forward (+)

26183742 .. 26192356

Gene Structure 8615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG162800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGGGACTGGGCAAGACTCTGCAAGCTGTCGCTTTGTTGAGCTATTTGAAGGTTCAAAAGATGTCACATGGACCATTCTTGGTGTTGTGTCCTCTAAGTGTGACTGATGGTTGGGTCTCAGAGATGGAAAACTTTGCTCCAAAACTAAAAGTTGTACGGTATGTTGGTGATAAAGAATATAGGCGCAGCTTACGTAGGACAATGTATGAGCATGTGAAAGAGCATTCCTCAGTATCTAATGTGTTGTCGTTACCTTTCGATGTCCTGTTGACAACGTATGACATCGCGTTGGCCGATCAGGATTTTCTTTCTCAAATACCATGGAACTATGCAGTAATTGATGAAGCACAAAGGCTAAAAAACCCTTCCAGTGTTCTGTACAATGTCCTAAGAGAGCGGTACCTCATTCCAAGAAGGTTACTGATGACTGGCACACCTATTCAAAACAATCTCACTGAACTGTGGGCTTTGATGTATTTTTGTATGCCTTCAGTCTTTCTGAAACTGGACGAGTTCCTTTTGACATTCAAGGAAGCTGGAGATCCTTCGTCAGGCTATAATACAGCTGAAGTCATAGAACAACTCAAAAGCTTAAAATGCATATTGGGGGCTTTCATGCTCCGACGCACAAAATCTAAACTCATCAAGATTGGAGATCTATTCCTGCCATCCCTTACTGAGATAACAGTGCTGGCACCACTGGTCAGCTTGCAAAAGAAGGTGTACATGTCAATATTGAGGAAGGAGCTTCCTAAGCTACTTGCACTATCTTCTGGAGGTTCAAATCATCAATCCTTACAGAATATTGTGATACAGTTGCGAAAAGCATGTAGCCATCCTTATCTCTTCCCTGGTATTGAGCCAGAACCATATGAAGAGGGTGAACACCTGATTCAGGCTAGCGGCAAACTTATGATTTTGGATCGACTACTTGAGAAGCTGCATGAGCAGGGACACCGTGTCCTTCTCTTTGCTCAGATGACGCATACACTCGACGTTCTACAGGATTTTCTTGAGTTGCGAAAATATTCCTATGAGCGCCTTGATGGATCAATTCGGGCTGAGGAGCGGTTTGCTGCTATAAGAAGTTTCAGCAGGCAATCAGCAAAACAAAGTTTGAAATCTCTAGCTGATCAAAATGATGCTTTTGTCTTCATGATCTCCACTAGAGCTGGGGGAGTTGGCTTGAATCTTGTTGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCCCAGGTTGATAAGCAAGCTCTGCAGCGGGCACACAGGATTGGTCAATTAAATTCTGTGCTGTCGATAAACCTAGTTACCGGACGTACAGTGGAGGAGGTTATCATGCGGAGAGCAGAAAGGAAGTTGCAGCTTAGCCATAATGTTATTGGGGATGATGTTATGGACGAGGAAGGTAAAGAGACAGCAGGAGTTGAACCTAGTGACCTGCGATCTATCATATTTGGGTTACATCTGTTTGATCCTGCTGAAATCAACAATGGTGAGTGTGAGATTTCAGAATTGAATGCTTTGGCCAAGAAGGCGATTTCAGTGCGCGATAAAGAAACTGCAACCAAGGATGAGAGGAAATTTGAGGTCAGTCCAACAGATGTATTGAGTGGACAAGATCTGGTTGTAGGAGAAAGTTCTACTTCTCTCTGTTTAAATACTAGTTTCGATGAAGCTTCATATCTGTCCTGGGTTGAGAAATTTAAGGAGGTACCACAAGCAAATAGCAATGAAAATACAGATATGGGAAGTCGAAGAAACATACCCGAGGAAAGGCGTCTAAAACTTGAGGCTGCAAAAAAAAGAGCAGAGGAGAAGAAGTTATATAGGTGGGTAGACCTTGGCTACCAATCATTGTCTGTTGAGGACCCTATCAGTCCTGTTGATAGGGACATCATGTCCGACTCAGGTTCTGTCCAGTTTGTTTATGGCGATTGTACACAACCATCAAAAGTTTGTCCGTCTGAGCCTACCATTATTTTCAGCTGTGTTGATGATTCTGGACAGTGGGGTCATGGAGGAATGTTTAATGCACTGGAGAAGCTATCTGCAAGCGTCCCCGATGCATATCAACGAGCTTCTGAATTTGATGACCTGCATCTTGGTGATCTTCACCTTATAAGACTTGATGAGGATTCGAATGAACAGAAGATGGACAGCAATCCCCCTCGATGGGTGGCTTTAGCTGTTGTACAATCTTATAATCCCAGGCGTAAAGTACCCCGGAGCAAGATTTCTATTCCTGACTTGGAACGTTGCTTATCAAAGGCATCATTTTCAGCCGCTCAAAGTTCTGCTTCAATCCACATGCCACGTATTGGGTATCAAGATGCATCGGATCGTGCAGAATGGTATACAGTGGAACGGCTTCTACGAAAATATGCTTCTATCCATGGCATAAAGATTTGTGTGTATTATTATAGACGATCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

813

Amino Acids

92.1

Weight (kDa)

6.25

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	1 - 282	2.1e-56	SNF2-related domain
HDA2-3	PF11496	232 - 357	5.9e-06	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	303 - 427	5.6e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2126, 2208
AasI	GACNNNNNNGTC	1 cut(s)	2016
Acc36I	ACCTGC	2 cut(s)	1452, 2109
Acc65I	GGTACC	2 cut(s)	399, 1717
AccB1I	GGYRCC	3 cut(s)	399, 694, 1717
AccB7I	CCANNNNNTGG	1 cut(s)	2324
AccBSI	CCGCTC	3 cut(s)	397, 1069, 2291
AccI	GTMKAC	2 cut(s)	1842, 2360
AccII	CGCG	2 cut(s)	287, 1554
AciI	CCGC	6 cut(s)	397, 903, 1069, 1264, 1345, 2289
AclI	AACGTT	1 cut(s)	2260
AclWI	GGATC	5 cut(s)	536, 930, 1057, 1472, 2352
AcoI	YGGCCR	2 cut(s)	291, 1530
AcsI	RAATTY	4 cut(s)	1288, 1586, 1706, 2090
AcuI	CTGAAG	2 cut(s)	474, 588
AcyI	GRCGYC	1 cut(s)	1783
AfaI	GTAC	9 cut(s)	156, 380, 401, 725, 1324, 1719, 1945, 2199, 2226
AfiI	CCNNNNNNNGG	6 cut(s)	551, 895, 1779, 2178, 2179, 2324
AflIII	ACRYGT	1 cut(s)	726
AhdI	GACNNNNNGTC	2 cut(s)	959, 1903
AhlI	ACTAGT	1 cut(s)	1667
AjnI	CCWGG	4 cut(s)	850, 1239, 1694, 2213
Alw26I	GTCTC	2 cut(s)	121, 1412
AlwI	GGATC	5 cut(s)	536, 930, 1057, 1472, 2352
AlwNI	CAGNNNCTG	1 cut(s)	1919
Ama87I	CYCGRG	1 cut(s)	1772
AoxI	GGCC	2 cut(s)	291, 1530
ApeKI	GCWGC	7 cut(s)	186, 940, 1076, 1199, 1261, 1366, 1799
ApoI	RAATTY	4 cut(s)	1288, 1586, 1706, 2090
Asp700I	GAANNNNTTC	2 cut(s)	1027, 2373
Asp718I	GGTACC	2 cut(s)	399, 1717
AspLEI	GCGC	3 cut(s)	186, 1041, 1554
AspS9I	GGNCC	2 cut(s)	71, 1873
AsuC2I	CCSGG	1 cut(s)	2230
AsuHPI	GGTGA	5 cut(s)	179, 893, 1511, 2111, 2123
AsuII	TTCGAA	1 cut(s)	2144
AsuNHI	GCTAGC	1 cut(s)	899
AvaI	CYCGRG	1 cut(s)	1772
AvaII	GGWCC	2 cut(s)	71, 1873
BaeGI	GKGCMC	1 cut(s)	1270
BalI	TGGCCA	1 cut(s)	1532
BanI	GGYRCC	3 cut(s)	399, 694, 1717
BbsI	GAAGAC	1 cut(s)	1144
BbvCI	CCTCAGC	1 cut(s)	1062
BbvI	GCAGC	7 cut(s)	198, 927, 1063, 1186, 1273, 1378, 1786
BccI	CCATC	8 cut(s)	101, 118, 676, 843, 1040, 1960, 2152, 2172
BceAI	ACGGC	1 cut(s)	2387
BcgI	CGANNNNNNTGC	2 cut(s)	1531, 1565
BciT130I	CCWGG	4 cut(s)	852, 1241, 1696, 2215
BclI	TGATCA	1 cut(s)	1132
BcnI	CCSGG	1 cut(s)	2230
BcoDI	GTCTC	2 cut(s)	121, 1412
BcuI	ACTAGT	1 cut(s)	1667
BfaI	CTAG	6 cut(s)	900, 1127, 1167, 1310, 1437, 1668
BfmI	CTRYAG	2 cut(s)	1001, 1259
BfoI	RGCGCY	1 cut(s)	1042
BfuAI	ACCTGC	2 cut(s)	1452, 2109
BglI	GCCNNNNNGGC	1 cut(s)	1538
BglII	AGATCT	2 cut(s)	655, 1624
BisI	GCNGC	9 cut(s)	187, 904, 941, 1077, 1200, 1262, 1367, 1800, 2289
BlpI	GCTNAGC	1 cut(s)	1370
BlsI	GCNGC	9 cut(s)	188, 905, 942, 1078, 1201, 1263, 1368, 1801, 2290
Bme1390I	CCNGG	5 cut(s)	852, 1241, 1696, 2215, 2230
Bme18I	GGWCC	2 cut(s)	71, 1873
BmeRI	GACNNNNNGTC	2 cut(s)	959, 1903
BmeT110I	CYCGRG	1 cut(s)	1772
BmgT120I	GGNCC	2 cut(s)	71, 1873
BmiI	GGNNCC	4 cut(s)	401, 696, 1719, 1875
BmrFI	CCNGG	5 cut(s)	852, 1241, 1696, 2215, 2230
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	6 cut(s)	1132, 2059, 2113, 2285, 2326, 2348
BmtI	GCTAGC	1 cut(s)	903
BmuI	ACTGGG	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	1144
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	3 cut(s)	558, 795, 2063
Bpu10I	CCTNAGC	2 cut(s)	753, 1062
Bpu1102I	GCTNAGC	1 cut(s)	1370
Bpu14I	TTCGAA	1 cut(s)	2144
BpuEI	CTTGAG	3 cut(s)	953, 1034, 1814
BpuMI	CCSGG	1 cut(s)	2230
BsaAI	YACGTR	2 cut(s)	194, 2321
BsaBI	GATNNNNATC	2 cut(s)	1233, 2073
BsaHI	GRCGYC	1 cut(s)	1783
BsaI	GGTCTC	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	1316
BsaXI	ACNNNNNCTCC	2 cut(s)	1811, 1841
Bsc4I	CCNNNNNNNGG	6 cut(s)	551, 895, 1779, 2178, 2179, 2324
Bse1I	ACTGG	7 cut(s)	12, 369, 433, 510, 705, 1924, 2046
Bse3DI	GCAATG	1 cut(s)	1741
Bse8I	GATNNNNATC	2 cut(s)	1233, 2073
BseBI	CCWGG	4 cut(s)	852, 1241, 1696, 2215
BseGI	GGATG	4 cut(s)	668, 835, 1396, 1582
BseJI	GATNNNNATC	2 cut(s)	1233, 2073
BseLI	CCNNNNNNNGG	6 cut(s)	551, 895, 1779, 2178, 2179, 2324
BseMI	GCAATG	1 cut(s)	1741
BseMII	CTCAG	7 cut(s)	132, 243, 669, 989, 1053, 1926, 1962
BseNI	ACTGG	7 cut(s)	12, 369, 433, 510, 705, 1924, 2046
BseRI	GAGGAG	3 cut(s)	1079, 1346, 1832
BseSI	GKGCMC	1 cut(s)	1270
BseXI	GCAGC	7 cut(s)	198, 927, 1063, 1186, 1273, 1378, 1786
BseYI	CCCAGC	1 cut(s)	1172
BsgI	GTGCAG	1 cut(s)	2370
Bsh1236I	CGCG	2 cut(s)	287, 1554
BshFI	GGCC	2 cut(s)	293, 1532
BshNI	GGYRCC	3 cut(s)	399, 694, 1717
BsiHKCI	CYCGRG	1 cut(s)	1772
BsiSI	CCGG	2 cut(s)	1317, 2230
BslFI	GGGAC	4 cut(s)	18, 966, 1910, 2048
BslI	CCNNNNNNNGG	6 cut(s)	551, 895, 1779, 2178, 2179, 2324
BsmAI	GTCTC	2 cut(s)	121, 1412
BsmFI	GGGAC	4 cut(s)	18, 966, 1910, 2048
BsmI	GAATGC	2 cut(s)	223, 1528
BsnI	GGCC	2 cut(s)	293, 1532
Bso31I	GGTCTC	1 cut(s)	121
BsoBI	CYCGRG	1 cut(s)	1772
Bsp119I	TTCGAA	1 cut(s)	2144
Bsp1286I	GDGCHC	1 cut(s)	1270
Bsp1407I	TGTACA	4 cut(s)	378, 723, 1943, 2197
Bsp1720I	GCTNAGC	1 cut(s)	1370
Bsp19I	CCATGG	2 cut(s)	320, 2398
BspACI	CCGC	6 cut(s)	397, 903, 1069, 1264, 1345, 2289
BspANI	GGCC	2 cut(s)	293, 1532
BspCNI	CTCAG	7 cut(s)	131, 242, 670, 988, 1054, 1925, 1963
BspFNI	CGCG	2 cut(s)	287, 1554
BspHI	TCATGA	1 cut(s)	1155
BspLI	GGNNCC	4 cut(s)	401, 696, 1719, 1875
BspMAI	CTGCAG	1 cut(s)	1263
BspMI	ACCTGC	2 cut(s)	1452, 2109
BspOI	GCTAGC	1 cut(s)	903
BspPI	GGATC	5 cut(s)	536, 930, 1057, 1472, 2352
BspT104I	TTCGAA	1 cut(s)	2144
BspT107I	GGYRCC	3 cut(s)	399, 694, 1717
BspTNI	GGTCTC	1 cut(s)	121
BsrBI	CCGCTC	3 cut(s)	397, 1069, 2291
BsrDI	GCAATG	1 cut(s)	1741
BsrGI	TGTACA	4 cut(s)	378, 723, 1943, 2197
BsrI	ACTGG	7 cut(s)	12, 369, 433, 510, 705, 1924, 2046
BssNAI	GTATAC	1 cut(s)	2361
BssNI	GRCGYC	1 cut(s)	1783
BssT1I	CCWWGG	4 cut(s)	320, 1572, 1846, 2398
Bst1107I	GTATAC	1 cut(s)	2361
Bst2UI	CCWGG	4 cut(s)	852, 1241, 1696, 2215
Bst4CI	ACNGT	9 cut(s)	159, 462, 688, 816, 959, 1210, 1327, 2013, 2365
Bst6I	CTCTTC	2 cut(s)	851, 870
BstACI	GRCGYC	1 cut(s)	1783
BstAPI	GCANNNNNTGC	1 cut(s)	1258
BstAUI	TGTACA	4 cut(s)	378, 723, 1943, 2197
BstBAI	YACGTR	2 cut(s)	194, 2321
BstBI	TTCGAA	1 cut(s)	2144
BstC8I	GCNNGC	8 cut(s)	24, 693, 710, 901, 1097, 1254, 1266, 2059
BstDSI	CCRYGG	2 cut(s)	320, 2398
BstENI	CCTNNNNNAGG	2 cut(s)	549, 893
BstF5I	GGATG	4 cut(s)	668, 835, 1396, 1582
BstFNI	CGCG	2 cut(s)	287, 1554
BstH2I	RGCGCY	1 cut(s)	1042
BstHHI	GCGC	3 cut(s)	186, 1041, 1554
BstMAI	GTCTC	2 cut(s)	121, 1412
BstMWI	GCNNNNNNNGC	5 cut(s)	597, 754, 946, 1258, 1538
BstNI	CCWGG	4 cut(s)	852, 1241, 1696, 2215
BstNSI	RCATGY	4 cut(s)	215, 730, 831, 2317
BstSCI	CCNGG	5 cut(s)	850, 1239, 1694, 2213, 2228
BstSFI	CTRYAG	2 cut(s)	1001, 1259
BstSLI	GKGCMC	1 cut(s)	1270
BstSNI	TACGTA	1 cut(s)	194
BstUI	CGCG	2 cut(s)	287, 1554
BstV1I	GCAGC	7 cut(s)	198, 927, 1063, 1186, 1273, 1378, 1786
BstV2I	GAAGAC	1 cut(s)	1144
BstX2I	RGATCY	3 cut(s)	541, 655, 1624
BstYI	RGATCY	3 cut(s)	541, 655, 1624
BstZ17I	GTATAC	1 cut(s)	2361
BsuRI	GGCC	2 cut(s)	293, 1532
BtgI	CCRYGG	2 cut(s)	320, 2398
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	4 cut(s)	668, 835, 1396, 1582
BtsIMutI	CAGTG	9 cut(s)	376, 453, 693, 698, 1332, 1554, 2018, 2039, 2370
BveI	ACCTGC	2 cut(s)	1452, 2109
Cac8I	GCNNGC	8 cut(s)	24, 693, 710, 901, 1097, 1254, 1266, 2059
CaiI	CAGNNNCTG	1 cut(s)	1919
CciI	TCATGA	1 cut(s)	1155
CfoI	GCGC	3 cut(s)	186, 1041, 1554
Cfr13I	GGNCC	2 cut(s)	71, 1873
CseI	GACGC	4 cut(s)	633, 991, 1772, 2050
Csp6I	GTAC	9 cut(s)	155, 379, 400, 724, 1323, 1718, 1944, 2198, 2225
CviQI	GTAC	9 cut(s)	155, 379, 400, 724, 1323, 1718, 1944, 2198, 2225
DraI	TTTAAA	1 cut(s)	1662
DrdI	GACNNNNNNGTC	1 cut(s)	2016
DriI	GACNNNNNGTC	2 cut(s)	959, 1903
DseDI	GACNNNNNNGTC	1 cut(s)	2016
EaeI	YGGCCR	2 cut(s)	291, 1530
Eam1104I	CTCTTC	2 cut(s)	851, 870
Eam1105I	GACNNNNNGTC	2 cut(s)	959, 1903
EarI	CTCTTC	2 cut(s)	851, 870
Eco105I	TACGTA	1 cut(s)	194
Eco130I	CCWWGG	4 cut(s)	320, 1572, 1846, 2398
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	71, 1873
Eco57I	CTGAAG	2 cut(s)	474, 588
Eco88I	CYCGRG	1 cut(s)	1772
EcoNI	CCTNNNNNAGG	2 cut(s)	549, 893
EcoO109I	RGGNCCY	1 cut(s)	1873
EcoRII	CCWGG	4 cut(s)	850, 1239, 1694, 2213
EcoT14I	CCWWGG	4 cut(s)	320, 1572, 1846, 2398
EcoT22I	ATGCAT	3 cut(s)	602, 2074, 2341
ErhI	CCWWGG	4 cut(s)	320, 1572, 1846, 2398
FalI	AAGNNNNNCTT	4 cut(s)	1633, 1665, 2287, 2319
FaqI	GGGAC	4 cut(s)	18, 966, 1910, 2048
FauI	CCCGC	1 cut(s)	1257
FauNDI	CATATG	1 cut(s)	871
FbaI	TGATCA	1 cut(s)	1132
FblI	GTMKAC	2 cut(s)	1842, 2360
Fnu4HI	GCNGC	9 cut(s)	187, 904, 941, 1077, 1200, 1262, 1367, 1800, 2289
FokI	GGATG	4 cut(s)	655, 822, 1403, 1589
Fsp4HI	GCNGC	9 cut(s)	187, 904, 941, 1077, 1200, 1262, 1367, 1800, 2289
FspBI	CTAG	6 cut(s)	900, 1127, 1167, 1310, 1437, 1668
GlaI	GCGC	3 cut(s)	185, 1040, 1553
GluI	GCNGC	9 cut(s)	187, 904, 941, 1077, 1200, 1262, 1367, 1800, 2289
GsaI	CCCAGC	1 cut(s)	1176
GsuI	CTGGAG	3 cut(s)	558, 795, 2063
HaeII	RGCGCY	1 cut(s)	1042
HaeIII	GGCC	2 cut(s)	293, 1532
HapII	CCGG	2 cut(s)	1317, 2230
HgaI	GACGC	4 cut(s)	633, 991, 1772, 2050
HhaI	GCGC	3 cut(s)	186, 1041, 1554
Hin1I	GRCGYC	1 cut(s)	1783
Hin6I	GCGC	3 cut(s)	184, 1039, 1552
HinP1I	GCGC	3 cut(s)	184, 1039, 1552
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	2 cut(s)	589, 1680
HinfI	GANTC	7 cut(s)	16, 892, 1189, 1234, 1910, 2003, 2141
HpaII	CCGG	2 cut(s)	1317, 2230
HphI	GGTGA	5 cut(s)	179, 893, 1511, 2111, 2123
Hpy166II	GTNNAC	7 cut(s)	270, 724, 884, 1619, 1843, 1946, 2361
Hpy188I	TCNGA	9 cut(s)	121, 501, 623, 978, 1516, 1909, 1972, 2089, 2344
Hpy188III	TCNNGA	8 cut(s)	299, 646, 774, 1013, 1156, 2007, 2249, 2333
Hpy8I	GTNNAC	7 cut(s)	270, 724, 884, 1619, 1843, 1946, 2361
Hpy99I	CGWCG	2 cut(s)	627, 998
HpyCH4III	ACNGT	9 cut(s)	159, 462, 688, 816, 959, 1210, 1327, 2013, 2365
HpyCH4IV	ACGT	6 cut(s)	193, 275, 996, 1321, 2260, 2320
HpyF10VI	GCNNNNNNNGC	5 cut(s)	597, 754, 946, 1258, 1538
HpySE526I	ACGT	6 cut(s)	193, 275, 996, 1321, 2260, 2320
Hsp92I	GRCGYC	1 cut(s)	1783
HspAI	GCGC	3 cut(s)	184, 1039, 1552
KpnI	GGTACC	2 cut(s)	403, 1721
Ksp22I	TGATCA	1 cut(s)	1132
LmnI	GCTCC	5 cut(s)	142, 624, 745, 1066, 2232
Lsp1109I	GCAGC	7 cut(s)	198, 927, 1063, 1186, 1273, 1378, 1786
LweI	GCATC	6 cut(s)	1132, 2059, 2113, 2285, 2326, 2348
MaeI	CTAG	6 cut(s)	900, 1127, 1167, 1310, 1437, 1668
MaeII	ACGT	6 cut(s)	193, 275, 996, 1321, 2260, 2320
MaeIII	GTNAC	7 cut(s)	63, 100, 249, 417, 1312, 1439, 1464
MbiI	CCGCTC	3 cut(s)	397, 1069, 2291
MboII	GAAGA	8 cut(s)	762, 838, 887, 1144, 1773, 1834, 2108, 2167
MflI	RGATCY	3 cut(s)	541, 655, 1624
MhlI	GDGCHC	1 cut(s)	1270
MlsI	TGGCCA	1 cut(s)	1532
MluCI	AATT	8 cut(s)	336, 1053, 1283, 1288, 1517, 1586, 1706, 2090
MluNI	TGGCCA	1 cut(s)	1532
MlyI	GAGTC	2 cut(s)	10, 1904
MmeI	TCCRAC	3 cut(s)	646, 1625, 1932
Mox20I	TGGCCA	1 cut(s)	1532
Mph1103I	ATGCAT	3 cut(s)	602, 2074, 2341
MroXI	GAANNNNTTC	2 cut(s)	1027, 2373
MscI	TGGCCA	1 cut(s)	1532
MseI	TTAA	5 cut(s)	593, 1286, 1661, 1710, 2034
MslI	CAYNNNNRTG	1 cut(s)	2109
Msp20I	TGGCCA	1 cut(s)	1532
MspA1I	CMGCKG	3 cut(s)	566, 1264, 1992
MspI	CCGG	2 cut(s)	1317, 2230
MspR9I	CCNGG	5 cut(s)	852, 1241, 1696, 2215, 2230
Mva1269I	GAATGC	2 cut(s)	223, 1528
MvaI	CCWGG	4 cut(s)	852, 1241, 1696, 2215
MvnI	CGCG	2 cut(s)	287, 1554
MwoI	GCNNNNNNNGC	5 cut(s)	597, 754, 946, 1258, 1538
NciI	CCSGG	1 cut(s)	2230
NcoI	CCATGG	2 cut(s)	320, 2398
NdeI	CATATG	1 cut(s)	871
NheI	GCTAGC	1 cut(s)	899
NlaIV	GGNNCC	4 cut(s)	401, 696, 1719, 1875
NmuCI	GTSAC	3 cut(s)	63, 100, 1439
NsiI	ATGCAT	3 cut(s)	602, 2074, 2341
NspI	RCATGY	4 cut(s)	215, 730, 831, 2317
NspV	TTCGAA	1 cut(s)	2144
PagI	TCATGA	1 cut(s)	1155
PciI	ACATGT	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 2377
PctI	GAATGC	2 cut(s)	223, 1528
PdmI	GAANNNNTTC	2 cut(s)	1027, 2373
PfeI	GAWTC	5 cut(s)	892, 1189, 1234, 2003, 2141
PflMI	CCANNNNNTGG	1 cut(s)	2324
PkrI	GCNGC	9 cut(s)	188, 905, 942, 1078, 1201, 1263, 1368, 1801, 2290
PleI	GAGTC	2 cut(s)	10, 1904
PpsI	GAGTC	2 cut(s)	10, 1904
Ppu21I	YACGTR	2 cut(s)	194, 2321
PpuMI	RGGWCCY	1 cut(s)	1873
PscI	ACATGT	1 cut(s)	726
PsiI	TTATAA	2 cut(s)	2126, 2208
Psp1406I	AACGTT	1 cut(s)	2260
Psp5II	RGGWCCY	1 cut(s)	1873
Psp6I	CCWGG	4 cut(s)	850, 1239, 1694, 2213
PspFI	CCCAGC	1 cut(s)	1172
PspGI	CCWGG	4 cut(s)	850, 1239, 1694, 2213
PspN4I	GGNNCC	4 cut(s)	401, 696, 1719, 1875
PspPI	GGNCC	2 cut(s)	71, 1873
PspPPI	RGGWCCY	1 cut(s)	1873
PsrI	GAACNNNNNNTAC	2 cut(s)	2361, 2393
PstI	CTGCAG	1 cut(s)	1263
PstNI	CAGNNNCTG	1 cut(s)	1919
PsuI	RGATCY	3 cut(s)	541, 655, 1624
PvuII	CAGCTG	2 cut(s)	566, 1992
RsaI	GTAC	9 cut(s)	156, 380, 401, 725, 1324, 1719, 1945, 2199, 2226
RsaNI	GTAC	9 cut(s)	155, 379, 400, 724, 1323, 1718, 1944, 2198, 2225
RseI	CAYNNNNRTG	1 cut(s)	2109
SaqAI	TTAA	5 cut(s)	593, 1286, 1661, 1710, 2034
SatI	GCNGC	9 cut(s)	187, 904, 941, 1077, 1200, 1262, 1367, 1800, 2289
Sau96I	GGNCC	2 cut(s)	71, 1873
SchI	GAGTC	2 cut(s)	10, 1904
ScrFI	CCNGG	5 cut(s)	852, 1241, 1696, 2215, 2230
SduI	GDGCHC	1 cut(s)	1270
SfaNI	GCATC	6 cut(s)	1132, 2059, 2113, 2285, 2326, 2348
SfcI	CTRYAG	2 cut(s)	1001, 1259
SfuI	TTCGAA	1 cut(s)	2144
SinI	GGWCC	2 cut(s)	71, 1873
SmiMI	CAYNNNNRTG	1 cut(s)	2109
SmlI	CTYRAG	3 cut(s)	932, 1013, 1793
SmoI	CTYRAG	3 cut(s)	932, 1013, 1793
SnaBI	TACGTA	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	1667
Sse9I	AATT	8 cut(s)	336, 1053, 1283, 1288, 1517, 1586, 1706, 2090
SsiI	CCGC	6 cut(s)	397, 903, 1069, 1264, 1345, 2289
SspI	AATATT	3 cut(s)	735, 805, 1028
SspMI	CTAG	6 cut(s)	900, 1127, 1167, 1310, 1437, 1668
StyD4I	CCNGG	5 cut(s)	850, 1239, 1694, 2213, 2228
StyI	CCWWGG	4 cut(s)	320, 1572, 1846, 2398
TaaI	ACNGT	9 cut(s)	159, 462, 688, 816, 959, 1210, 1327, 2013, 2365
TaiI	ACGT	6 cut(s)	196, 278, 999, 1324, 2263, 2323
TaqI	TCGA	8 cut(s)	258, 925, 993, 1301, 1674, 1759, 2144, 2176
TasI	AATT	8 cut(s)	336, 1053, 1283, 1288, 1517, 1586, 1706, 2090
TatI	WGTACW	4 cut(s)	378, 723, 1943, 2197
TauI	GCSGC	2 cut(s)	906, 2291
TfiI	GAWTC	5 cut(s)	892, 1189, 1234, 2003, 2141
Tru1I	TTAA	5 cut(s)	593, 1286, 1661, 1710, 2034
Tru9I	TTAA	5 cut(s)	593, 1286, 1661, 1710, 2034
TscAI	CASTG	9 cut(s)	376, 460, 693, 705, 1332, 1554, 2018, 2046, 2370
TseFI	GTSAC	3 cut(s)	63, 100, 1439
TseI	GCWGC	7 cut(s)	186, 940, 1076, 1199, 1261, 1366, 1799
Tsp45I	GTSAC	3 cut(s)	63, 100, 1439
TspDTI	ATGAA	8 cut(s)	357, 604, 888, 1144, 1674, 1692, 1752, 2163
TspGWI	ACGGA	1 cut(s)	1956
TspRI	CASTG	9 cut(s)	376, 460, 693, 705, 1332, 1554, 2018, 2046, 2370
Van91I	CCANNNNNTGG	1 cut(s)	2324
VpaK11BI	GGWCC	2 cut(s)	71, 1873
XagI	CCTNNNNNAGG	2 cut(s)	549, 893
XapI	RAATTY	4 cut(s)	1288, 1586, 1706, 2090
XceI	RCATGY	4 cut(s)	215, 730, 831, 2317
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1382, 1931
XmiI	GTMKAC	2 cut(s)	1842, 2360
XmnI	GAANNNNTTC	2 cut(s)	1027, 2373
XspI	CTAG	6 cut(s)	900, 1127, 1167, 1310, 1437, 1668
Zsp2I	ATGCAT	3 cut(s)	602, 2074, 2341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.