pycom07g08110

chromodomain-helicase-DNA-binding protein 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
7476807 .. 7479634
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g08110.5

Sequence Viewer

Length: 1293 bp
ATGGTGCTTTTGTCTTCATCGATCTCTACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCCCAGGTTGACAAGCAAGCTCTGCAGCGGGCACACAGGATTGGTCAGATGAATAACGTACTGTCAATAAACCTAGTTACAGGACGTACGGTGGAGGAGGTTATCATTCGGAGAGCAGAGAGGAAATTGCAGCTAAGCCATAATGTTGTTGGGGACAATGTTATGGACCAGGATGGTAAAGAATCAAGTGGAGTTGAACCTACTGACTTACGATCCATCATATTTGGGTTACATCTCTTCGATCCTGATGAAGTCAACAATGGTGTGCTTGAGATGTCAGAACTGAATACTATGGCTGAGAAGGTAATTTCAGTGCGGAATAAACAAGTAGCTACCAAGGATGAGAGGAAATTTGAGCTTAATCCAGCAGATGTTTTGAATGGAAATGATCTTGTTGTAGGAGAAGGTTCCACTTCTCTTAGTTTCAATTCGGGCCTTGATGAATCTTCATATCTCTCTTGGGTTGAAAAATTCAAGAACGTGTCACAAGAAAATATGGATATGGGAAGCAGAAGAAATCTACTCAAGGAAAAACGTCTAAAACTTGAGACTGCAAAGAAGAAAGCAGACGAGAAGAAGTTGTCAAAGTGGGAAGAGCTTGGATACCATTCACTGTCTGTTGAAGACCCTATCAGCCCTGTGGATAGTGACATGATGTCTGATTCAGGTTCTGTCCAATTTGTTTATGGGGATTGTACACAACCATCAAAAGTTTGCCCCTCTGAGCCTACCATTGTTTTCAGCTGTGTTGATGATTCTGGACACTGGGGTCATGGAGGAATGTTTGATGCACTGTCCAAGCTATCTGCAAGTATCCCTGATGCGTATCAACGAGCTTCCGAATTTGGTGACCTGCATCTTGGTGATCTTCACCTTATAAGAGTTTATGAGGATTCAGATGAGCCTGAGATGGACTCGAATCCTCCTCAATGGGTGGCTTTGGCTGTTGTGCAATCTTATAATCCTAGGCGTAAAGTACCCCGCAGCAAGATTTCTATCCCTGACTTGGAAAGTTGCTTATCGAAAGCATCGTTTTCAGCTGCTCAAAGTTCTGCTTCAATCCACATGCCACGTATTGGGTATCAAGATGCATCAGATCGTGCAGAATGGTACTCCGTTGAACGCCTTCTACGAAAATATGCTTCTATTTATGGCATAAAGATATACGTGTATTATTTTAAGCGGTCTGCTTGA

Protein Analysis

431

Amino Acids

48.0

Weight (kDa)

5.29

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 977, 1059
AasI GACNNNNNNGTC 1 cut(s) 867
Acc36I ACCTGC 1 cut(s) 960
AccB7I CCANNNNNTGG 1 cut(s) 1175
AciI CCGC 4 cut(s) 127, 415, 1081, 1282
AclWI GGATC 2 cut(s) 306, 335
AcsI RAATTY 3 cut(s) 449, 569, 941
AfaI GTAC 5 cut(s) 159, 187, 796, 1077, 1211
AfiI CCNNNNNNNGG 2 cut(s) 1105, 1175
AflIII ACRYGT 2 cut(s) 579, 1266
AgsI TTSAA 9 cut(s) 52, 296, 478, 526, 566, 574, 722, 1158, 1220
AhdI GACNNNNNGTC 1 cut(s) 754
AjnI CCWGG 2 cut(s) 102, 267
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 2 cut(s) 306, 335
AlwNI CAGNNNCTG 1 cut(s) 770
AoxI GGCC 1 cut(s) 532
ApeKI GCWGC 5 cut(s) 62, 124, 229, 1083, 1139
ApoI RAATTY 3 cut(s) 449, 569, 941
Asp700I GAANNNNTTC 1 cut(s) 1224
AspA2I CCTAGG 1 cut(s) 1064
AspS9I GGNCC 2 cut(s) 265, 532
AsuHPI GGTGA 3 cut(s) 959, 962, 974
AvaII GGWCC 1 cut(s) 265
AvrII CCTAGG 1 cut(s) 1064
BaeGI GKGCMC 1 cut(s) 133
BbsI GAAGAC 2 cut(s) 6, 729
BbvI GCAGC 5 cut(s) 49, 136, 241, 1095, 1126
BccI CCATC 4 cut(s) 266, 323, 811, 1003
BciT130I CCWGG 2 cut(s) 104, 269
BciVI GTATCC 2 cut(s) 695, 923
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 2 cut(s) 173, 1065
BfmI CTRYAG 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 960
BfuI GTATCC 2 cut(s) 695, 923
BisI GCNGC 5 cut(s) 63, 125, 230, 1084, 1140
BlnI CCTAGG 1 cut(s) 1064
BlpI GCTNAGC 1 cut(s) 233
BlsI GCNGC 5 cut(s) 64, 126, 231, 1085, 1141
Bme1390I CCNGG 2 cut(s) 104, 269
Bme18I GGWCC 1 cut(s) 265
BmeRI GACNNNNNGTC 1 cut(s) 754
BmgT120I GGNCC 2 cut(s) 265, 532
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 2 cut(s) 104, 269
BmrI ACTGGG 1 cut(s) 874
BmsI GCATC 6 cut(s) 877, 910, 964, 1136, 1177, 1199
BmuI ACTGGG 1 cut(s) 874
BpiI GAAGAC 2 cut(s) 6, 729
BplI GAGNNNNNCTC 2 cut(s) 998, 1030
Bpu1102I GCTNAGC 1 cut(s) 233
BpuEI CTTGAG 3 cut(s) 389, 608, 665
Bsa29I ATCGAT 1 cut(s) 20
BsaAI YACGTR 2 cut(s) 1172, 1267
BsaBI GATNNNNATC 3 cut(s) 96, 924, 1094
BsaJI CCNNGG 3 cut(s) 102, 435, 1064
Bsc4I CCNNNNNNNGG 2 cut(s) 1105, 1175
Bse1I ACTGG 1 cut(s) 869
Bse8I GATNNNNATC 3 cut(s) 96, 924, 1094
BseBI CCWGG 2 cut(s) 104, 269
BseCI ATCGAT 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 102, 435, 1064
BseGI GGATG 2 cut(s) 277, 445
BseJI GATNNNNATC 3 cut(s) 96, 924, 1094
BseLI CCNNNNNNNGG 2 cut(s) 1105, 1175
BseMII CTCAG 3 cut(s) 387, 813, 996
BseNI ACTGG 1 cut(s) 869
BseRI GAGGAG 2 cut(s) 209, 1014
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 5 cut(s) 49, 136, 241, 1095, 1126
BseYI CCCAGC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 1221
BshFI GGCC 1 cut(s) 534
BshVI ATCGAT 1 cut(s) 20
BsiWI CGTACG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 1105, 1175
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 534
Bsp1286I GDGCHC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 794
Bsp143I GATC 6 cut(s) 21, 311, 340, 487, 964, 1195
Bsp1720I GCTNAGC 1 cut(s) 233
BspACI CCGC 4 cut(s) 127, 415, 1081, 1282
BspANI GGCC 1 cut(s) 534
BspCNI CTCAG 3 cut(s) 388, 814, 997
BspDI ATCGAT 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 508
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 960
BspPI GGATC 2 cut(s) 306, 335
BspQI GCTCTTC 1 cut(s) 687
BsrGI TGTACA 1 cut(s) 794
BsrI ACTGG 1 cut(s) 869
BssECI CCNNGG 3 cut(s) 102, 435, 1064
BssMI GATC 6 cut(s) 21, 311, 340, 487, 964, 1195
BssT1I CCWWGG 2 cut(s) 435, 1064
Bst2UI CCWGG 2 cut(s) 104, 269
Bst4CI ACNGT 5 cut(s) 73, 162, 190, 714, 894
Bst6I CTCTTC 2 cut(s) 341, 687
BstAPI GCANNNNNTGC 1 cut(s) 121
BstAUI TGTACA 1 cut(s) 794
BstBAI YACGTR 2 cut(s) 1172, 1267
BstC8I GCNNGC 2 cut(s) 117, 129
BstDEI CTNAG 5 cut(s) 233, 396, 518, 822, 1005
BstEII GGTNACC 1 cut(s) 947
BstF5I GGATG 2 cut(s) 277, 445
BstKTI GATC 6 cut(s) 24, 314, 343, 490, 967, 1198
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 6 cut(s) 21, 311, 340, 487, 964, 1195
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 2 cut(s) 104, 269
BstNSI RCATGY 1 cut(s) 1168
BstPI GGTNACC 1 cut(s) 947
BstSCI CCNGG 2 cut(s) 102, 267
BstSFI CTRYAG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 133
BstV1I GCAGC 5 cut(s) 49, 136, 241, 1095, 1126
BstV2I GAAGAC 2 cut(s) 6, 729
Bsu15I ATCGAT 1 cut(s) 20
BsuI GTATCC 2 cut(s) 695, 923
BsuRI GGCC 1 cut(s) 534
BsuTUI ATCGAT 1 cut(s) 20
BtsCI GGATG 2 cut(s) 277, 445
BtsIMutI CAGTG 4 cut(s) 417, 710, 862, 890
BveI ACCTGC 1 cut(s) 960
Cac8I GCNNGC 2 cut(s) 117, 129
CaiI CAGNNNCTG 1 cut(s) 770
Cfr13I GGNCC 2 cut(s) 265, 532
ClaI ATCGAT 1 cut(s) 20
Csp6I GTAC 5 cut(s) 158, 186, 795, 1076, 1210
CviAII CATG 3 cut(s) 751, 872, 1165
CviQI GTAC 5 cut(s) 158, 186, 795, 1076, 1210
DdeI CTNAG 5 cut(s) 233, 396, 518, 822, 1005
DpnI GATC 6 cut(s) 23, 313, 342, 489, 966, 1197
DpnII GATC 6 cut(s) 21, 311, 340, 487, 964, 1195
DrdI GACNNNNNNGTC 1 cut(s) 867
DriI GACNNNNNGTC 1 cut(s) 754
DseDI GACNNNNNNGTC 1 cut(s) 867
Eam1104I CTCTTC 2 cut(s) 341, 687
Eam1105I GACNNNNNGTC 1 cut(s) 754
EarI CTCTTC 2 cut(s) 341, 687
Eco130I CCWWGG 2 cut(s) 435, 1064
Eco47I GGWCC 1 cut(s) 265
Eco91I GGTNACC 1 cut(s) 947
EcoO65I GGTNACC 1 cut(s) 947
EcoRII CCWGG 2 cut(s) 102, 267
EcoT14I CCWWGG 2 cut(s) 435, 1064
EcoT22I ATGCAT 1 cut(s) 1192
ErhI CCWWGG 2 cut(s) 435, 1064
FaeI CATG 3 cut(s) 754, 875, 1168
FalI AAGNNNNNCTT 2 cut(s) 1138, 1170
FaqI GGGAC 1 cut(s) 266
FatI CATG 3 cut(s) 750, 871, 1164
FauI CCCGC 2 cut(s) 120, 1088
Fnu4HI GCNGC 5 cut(s) 63, 125, 230, 1084, 1140
FokI GGATG 2 cut(s) 284, 452
Fsp4HI GCNGC 5 cut(s) 63, 125, 230, 1084, 1140
FspBI CTAG 2 cut(s) 173, 1065
GluI GCNGC 5 cut(s) 63, 125, 230, 1084, 1140
GsaI CCCAGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 534
Hin1II CATG 3 cut(s) 754, 875, 1168
HincII GTYRAC 2 cut(s) 109, 355
HindII GTYRAC 2 cut(s) 109, 355
HinfI GANTC 9 cut(s) 52, 97, 281, 542, 761, 854, 992, 1013, 1018
HphI GGTGA 3 cut(s) 959, 962, 974
Hpy166II GTNNAC 3 cut(s) 109, 355, 797
Hpy188I TCNGA 8 cut(s) 147, 210, 379, 760, 823, 940, 997, 1195
Hpy188III TCNNGA 4 cut(s) 344, 574, 858, 1184
Hpy8I GTNNAC 3 cut(s) 109, 355, 797
HpyAV CCTTC 3 cut(s) 394, 497, 1235
HpyCH4III ACNGT 5 cut(s) 73, 162, 190, 714, 894
HpyCH4IV ACGT 6 cut(s) 156, 184, 579, 634, 1171, 1266
HpyCH4V TGCA 9 cut(s) 124, 229, 653, 890, 908, 955, 1051, 1190, 1202
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 5 cut(s) 233, 396, 518, 822, 1005
HpySE526I ACGT 6 cut(s) 156, 184, 579, 634, 1171, 1266
Hsp92II CATG 3 cut(s) 754, 875, 1168
Kzo9I GATC 6 cut(s) 21, 311, 340, 487, 964, 1195
LguI GCTCTTC 1 cut(s) 687
Lsp1109I GCAGC 5 cut(s) 49, 136, 241, 1095, 1126
LweI GCATC 6 cut(s) 877, 910, 964, 1136, 1177, 1199
MaeI CTAG 2 cut(s) 173, 1065
MaeII ACGT 6 cut(s) 156, 184, 579, 634, 1171, 1266
MaeIII GTNAC 5 cut(s) 175, 327, 582, 746, 947
MalI GATC 6 cut(s) 23, 313, 342, 489, 966, 1197
MboI GATC 6 cut(s) 21, 311, 340, 487, 964, 1195
MboII GAAGA 9 cut(s) 6, 328, 537, 624, 670, 685, 704, 734, 959
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 7 cut(s) 224, 405, 449, 526, 569, 776, 941
MlyI GAGTC 1 cut(s) 1007
MnlI CCTC 9 cut(s) 187, 190, 213, 438, 829, 869, 982, 1032, 1035
Mph1103I ATGCAT 1 cut(s) 1192
MroXI GAANNNNTTC 1 cut(s) 1224
MseI TTAA 2 cut(s) 459, 1278
MslI CAYNNNNRTG 1 cut(s) 960
MspA1I CMGCKG 3 cut(s) 127, 843, 1139
MspR9I CCNGG 2 cut(s) 104, 269
MvaI CCWGG 2 cut(s) 104, 269
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 6 cut(s) 21, 311, 340, 487, 964, 1195
NlaIII CATG 3 cut(s) 754, 875, 1168
NlaIV GGNNCC 1 cut(s) 508
NmuCI GTSAC 3 cut(s) 582, 746, 947
NsiI ATGCAT 1 cut(s) 1192
NspI RCATGY 1 cut(s) 1168
PciSI GCTCTTC 1 cut(s) 687
PcsI WCGNNNNNNNCGW 2 cut(s) 1127, 1228
PdmI GAANNNNTTC 1 cut(s) 1224
PfeI GAWTC 8 cut(s) 52, 97, 281, 542, 761, 854, 992, 1018
Pfl23II CGTACG 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 1175
PkrI GCNGC 5 cut(s) 64, 126, 231, 1085, 1141
PleI GAGTC 1 cut(s) 1007
PpsI GAGTC 1 cut(s) 1007
Ppu21I YACGTR 2 cut(s) 1172, 1267
PsiI TTATAA 2 cut(s) 977, 1059
Psp6I CCWGG 2 cut(s) 102, 267
PspEI GGTNACC 1 cut(s) 947
PspFI CCCAGC 1 cut(s) 35
PspGI CCWGG 2 cut(s) 102, 267
PspLI CGTACG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 2 cut(s) 265, 532
PsrI GAACNNNNNNTAC 2 cut(s) 1212, 1244
PstI CTGCAG 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 770
PvuII CAGCTG 2 cut(s) 843, 1139
RsaI GTAC 5 cut(s) 159, 187, 796, 1077, 1211
RsaNI GTAC 5 cut(s) 158, 186, 795, 1076, 1210
RseI CAYNNNNRTG 1 cut(s) 960
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 2 cut(s) 459, 1278
SatI GCNGC 5 cut(s) 63, 125, 230, 1084, 1140
Sau3AI GATC 6 cut(s) 21, 311, 340, 487, 964, 1195
Sau96I GGNCC 2 cut(s) 265, 532
SchI GAGTC 1 cut(s) 1007
ScrFI CCNGG 2 cut(s) 104, 269
SduI GDGCHC 1 cut(s) 133
SfaNI GCATC 6 cut(s) 877, 910, 964, 1136, 1177, 1199
SfcI CTRYAG 1 cut(s) 122
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 3 cut(s) 368, 623, 644
SmoI CTYRAG 3 cut(s) 368, 623, 644
Sse9I AATT 7 cut(s) 224, 405, 449, 526, 569, 776, 941
SsiI CCGC 4 cut(s) 127, 415, 1081, 1282
SspMI CTAG 2 cut(s) 173, 1065
StyD4I CCNGG 2 cut(s) 102, 267
StyI CCWWGG 2 cut(s) 435, 1064
TaaI ACNGT 5 cut(s) 73, 162, 190, 714, 894
TaiI ACGT 6 cut(s) 159, 187, 582, 637, 1174, 1269
TaqI TCGA 4 cut(s) 20, 339, 1016, 1121
TasI AATT 7 cut(s) 224, 405, 449, 526, 569, 776, 941
TatI WGTACW 1 cut(s) 794
TfiI GAWTC 8 cut(s) 52, 97, 281, 542, 761, 854, 992, 1018
Tru1I TTAA 2 cut(s) 459, 1278
Tru9I TTAA 2 cut(s) 459, 1278
TscAI CASTG 4 cut(s) 417, 717, 869, 897
TseFI GTSAC 3 cut(s) 582, 746, 947
TseI GCWGC 5 cut(s) 62, 124, 229, 1083, 1139
Tsp45I GTSAC 3 cut(s) 582, 746, 947
TspDTI ATGAA 5 cut(s) 6, 164, 363, 537, 555
TspGWI ACGGA 1 cut(s) 1204
TspRI CASTG 4 cut(s) 417, 717, 869, 897
Van91I CCANNNNNTGG 1 cut(s) 1175
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 3 cut(s) 449, 569, 941
XceI RCATGY 1 cut(s) 1168
XcmI CCANNNNNNNNNTGG 2 cut(s) 245, 782
XmaJI CCTAGG 1 cut(s) 1064
XmnI GAANNNNTTC 1 cut(s) 1224
XspI CTAG 2 cut(s) 173, 1065
Zsp2I ATGCAT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.