Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Forward (+)

37541306 .. 37549913

Gene Structure 8608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG197500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

ATGAATTACGAGAAGAGGCTCAGAGCCGCGGCGGAGATCATACTCGCCGACGACGCACGCGCCGGAGACGCGCGTGTCAGCGCCGAAGAGCTCGGCGTGACGGCGACGCTGAAGCCGCACCAAGTCGAAGGCGTCTCGTGGCTCATACGGCGGTACAACCTCGGCGTCAACGTCGTTCTCGTGGATGTTTTACAGATGGGACTGGGAAAGACTCTGCAAGCTGTCGCTTTATTGAGCTATTTGAAGGTTCAAAAGATGTCACGTGGACCATTCTTGGTGTTGTGTCCTCTAAGTGTGACTGATGGTTGGGTCTCGGAGATGGAAAACTTTGCTCCAAAATTAAAATTTGTACGGTATGTTGGTGATAAAGAATATAGGCGCAGCTTACGCAGGACAATATATGAGCATGTGAAAGTGCATTCCTCAGTATCTGATGTGTTGTCGTTACCTTTCGTTGTCCTGTTGACAACATATGACATCGCGTTAGCCGATCAGGATTTCCTTTCTCAAATACCATGGAACTATGCAGTAATTGATGAAGCGCAAAGGCTTAAAAACCCTTCTAGTGTTCTGTACAATGTCCTAAGAGAGCGATATCTCATTCCAAGAAGGTTACTGATGACCGGCACACCTATTCAAAACAATCTCACTGAACTGTGGGCTTTGATGTATTTTTGTATGCCTTCAGTCTTTCTGAAACTGGACGAGTTCCTTGTTACATTCAAGGAAGCTGGAGATCCTTTGTCAGGCTATAATACAGCTGAAGTCATAGAACAACTCAAAAGCTTAAAACGCATACTGGGGGCTTTCATGCTCCGGCGCACAAAATCTAAACTCATCGAGATTGGAGATCTATTCCTGCCACCCCTTACTGAGATAACTGTGCTGGCACCACTGGTCAGCTTGCAAAAGAAGGTGTACATGTCAATATTGAGGAAGGAGCTTCCTAAGCTACTTGCACTATCTTCTGGAGGTTCAAATCATCAATCCTTACAGAATATTGTGATACAGTTGCGAAAAGCATGTAGCCATCCTTATCTCTTCCCTGGTATTGAGCCAGAACCATATGAAGAGGGTGAACACCTGATTCAGGCTAGCGGTAAACTTATGATTTTGGATCGACTACTTCGGAAGCTGCATGAGCAGGGACACCGTGTCCTTCTCTTTGCTCAGATGACGCATACACTCGACGTTCTACAGGATTTTCTTGAGTTGCGAAAATATTCCTATGAGCGCCTTGATGGATCAATTCGGGCTGAGGAGCGGTTTGCTGCTATAAGAAGTTTCAGCAGGCAATCAGCAAAACAAAGTTTGAAGTCCCAAGCTGATCAAAATGATGCTTTTGTCTTCATGATCTCCACTAGAGCTGGGGGAGTTGGCTTGAATCTTGTCGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCCCAGGTTGATAAGCAAGCTTTGCAGCGGGCACACAGGATTGGTCAATTAAATTCTGTGCTGTCAATAAACCTAGTTACCGGACGTACAGTGGAGGAGGTTATCATGCGGAGAGCAGAAAGGAAGTTGCAGCTTAGCCATAATGTTATTGGGGATGATGTTATGGACGAGGAAGGTAAAGAGACAGCAGGAGTTGAACCTAGTGACCTGCGATCTATCATATTTGGGTTACATCTGTTTGATCCTGCTGAAGTCAACAATGGTGAGTGTGAGATTTCAGAATTGGATGCTTTGGCCGAGAAGGCGATTTCAGTGCGCAATAAAGAAACAGCAACCAAGGATGAGAGGAAATTTGAGGTCGGTCCAACGGATGTATTGAATGGACAAGATCTGGTTGCAGGAGGAAGTTCTACTTCTCTCAGTTTAAATACTAGTTTCGATGAAGATTCATATCTCTCCTGGGTTGAGAAATTCAAGGAGGTACCACAAGCAAATAGCAATGAAAATTCAGATATGGGAAGCCGAAGAAACTTACCTGAGGAAAGGCATCTAAAACTTGAGGCTGCAAAAAAAAGAGCAGAGGAAAAGAAGTTATCTAGGTGGGTAGACCTGGGCTACCAATCACTGTCTGTTGAGGAGCCTATCATTCCTGTTGATAGGGACATCATGTCCGACTCAGGTTCTGTCCAGTTTGTTTATGGAGATTGTACACAACCATCAAAAGTTTGTCCCTCTGAGCCTACCATTATTTTCAGCTGTGTTGATGATTCTGGACAGTGGGGTCATGGAGGAATGTTTAATGCACTGGAGAGGCTATCTGCAAGTGTCCCCGATGCATATCAACGAGCTTCTGAATTTAACGACCTGCATCTTGGTGATCTTCACCTTATAAGACTTGATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

778

Amino Acids

87.56

Weight (kDa)

5.73

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	40 - 347	4.6e-61	SNF2-related domain
HDA2-3	PF11496	297 - 437	8.2e-06	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	368 - 492	5.4e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2321
AasI	GACNNNNNNGTC	2 cut(s)	74, 2211
Acc16I	TGCGCA	1 cut(s)	1748
Acc36I	ACCTGC	2 cut(s)	1647, 2304
Acc65I	GGTACC	1 cut(s)	1912
AccB1I	GGYRCC	2 cut(s)	889, 1912
AccBSI	CCGCTC	1 cut(s)	1264
AccI	GTMKAC	1 cut(s)	2037
AccII	CGCG	5 cut(s)	29, 60, 71, 73, 482
AciI	CCGC	9 cut(s)	27, 29, 32, 116, 151, 1098, 1264, 1459, 1540
AclWI	GGATC	4 cut(s)	731, 1125, 1252, 1667
AcoI	YGGCCR	1 cut(s)	1725
AcsI	RAATTY	6 cut(s)	344, 1483, 1781, 1901, 1936, 2285
AcuI	CTGAAG	4 cut(s)	131, 669, 783, 1701
AcvI	CACGTG	1 cut(s)	263
AcyI	GRCGYC	2 cut(s)	132, 165
AfaI	GTAC	7 cut(s)	155, 351, 575, 920, 1519, 1914, 2140
AfiI	CCNNNNNNNGG	2 cut(s)	746, 1090
AflIII	ACRYGT	1 cut(s)	921
AhdI	GACNNNNNGTC	2 cut(s)	1154, 2098
AhlI	ACTAGT	1 cut(s)	1862
AjnI	CCWGG	4 cut(s)	1045, 1434, 1889, 2040
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	4 cut(s)	60, 139, 316, 1607
AlwI	GGATC	4 cut(s)	731, 1125, 1252, 1667
AlwNI	CAGNNNCTG	2 cut(s)	431, 2114
AoxI	GGCC	1 cut(s)	1725
ApeKI	GCWGC	7 cut(s)	381, 1135, 1271, 1394, 1456, 1561, 1994
ApoI	RAATTY	6 cut(s)	344, 1483, 1781, 1901, 1936, 2285
Asp700I	GAANNNNTTC	1 cut(s)	1222
Asp718I	GGTACC	1 cut(s)	1912
AspLEI	GCGC	8 cut(s)	62, 73, 83, 381, 544, 822, 1236, 1749
AspS9I	GGNCC	2 cut(s)	266, 1793
AsuHPI	GGTGA	5 cut(s)	374, 1088, 1706, 2306, 2318
AsuNHI	GCTAGC	1 cut(s)	1094
AvaII	GGWCC	2 cut(s)	266, 1793
AxyI	CCTNAGG	1 cut(s)	1968
BaeGI	GKGCMC	1 cut(s)	1465
BanI	GGYRCC	2 cut(s)	889, 1912
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	2 cut(s)	136, 179
BbrPI	CACGTG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	1339
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	1257
BbvI	GCAGC	7 cut(s)	393, 1122, 1258, 1381, 1468, 1573, 1981
BccI	CCATC	7 cut(s)	190, 296, 313, 1038, 1235, 2155, 2324
BceAI	ACGGC	2 cut(s)	117, 164
BcgI	CGANNNNNNTGC	2 cut(s)	1726, 1760
BciT130I	CCWGG	4 cut(s)	1047, 1436, 1891, 2042
BclI	TGATCA	1 cut(s)	1327
BcoDI	GTCTC	4 cut(s)	60, 139, 316, 1607
BcuI	ACTAGT	1 cut(s)	1862
BfaI	CTAG	7 cut(s)	564, 1095, 1362, 1505, 1632, 1863, 2028
BfmI	CTRYAG	1 cut(s)	1196
BfoI	RGCGCY	2 cut(s)	84, 1237
BfuAI	ACCTGC	2 cut(s)	1647, 2304
BglI	GCCNNNNNGGC	1 cut(s)	1733
BglII	AGATCT	2 cut(s)	850, 1819
BlpI	GCTNAGC	1 cut(s)	1565
Bme1390I	CCNGG	4 cut(s)	1047, 1436, 1891, 2042
Bme18I	GGWCC	2 cut(s)	266, 1793
BmeRI	GACNNNNNGTC	2 cut(s)	1154, 2098
BmgT120I	GGNCC	2 cut(s)	266, 1793
BmiI	GGNNCC	3 cut(s)	891, 1914, 2070
BmrFI	CCNGG	4 cut(s)	1047, 1436, 1891, 2042
BmrI	ACTGGG	2 cut(s)	212, 809
BmsI	GCATC	5 cut(s)	1327, 1708, 1987, 2254, 2308
BmtI	GCTAGC	1 cut(s)	1098
BmuI	ACTGGG	2 cut(s)	212, 809
BpiI	GAAGAC	1 cut(s)	1339
BpmI	CTGGAG	3 cut(s)	753, 990, 2258
Bpu10I	CCTNAGC	2 cut(s)	948, 1257
Bpu1102I	GCTNAGC	1 cut(s)	1565
BpuEI	CTTGAG	2 cut(s)	1229, 2009
BsaAI	YACGTR	1 cut(s)	263
BsaBI	GATNNNNATC	3 cut(s)	1428, 1881, 2268
BsaHI	GRCGYC	2 cut(s)	132, 165
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	8 cut(s)	27, 160, 515, 1045, 1434, 1767, 1890, 2041
BsaWI	WCCGGW	1 cut(s)	1511
Bsc4I	CCNNNNNNNGG	2 cut(s)	746, 1090
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	6 cut(s)	207, 705, 804, 900, 2119, 2241
Bse21I	CCTNAGG	1 cut(s)	1968
Bse3DI	GCAATG	1 cut(s)	1936
Bse8I	GATNNNNATC	3 cut(s)	1428, 1881, 2268
BseBI	CCWGG	4 cut(s)	1047, 1436, 1891, 2042
BseDI	CCNNGG	8 cut(s)	27, 160, 515, 1045, 1434, 1767, 1890, 2041
BseGI	GGATG	6 cut(s)	190, 1030, 1591, 1723, 1777, 1807
BseJI	GATNNNNATC	3 cut(s)	1428, 1881, 2268
BseLI	CCNNNNNNNGG	2 cut(s)	746, 1090
BseMI	GCAATG	1 cut(s)	1936
BseMII	CTCAG	9 cut(s)	34, 438, 864, 1184, 1248, 1864, 1959, 2121, 2157
BseNI	ACTGG	6 cut(s)	207, 705, 804, 900, 2119, 2241
BseRI	GAGGAG	3 cut(s)	1274, 1541, 2081
BseSI	GKGCMC	1 cut(s)	1465
BseXI	GCAGC	7 cut(s)	393, 1122, 1258, 1381, 1468, 1573, 1981
BseYI	CCCAGC	1 cut(s)	1367
Bsh1236I	CGCG	5 cut(s)	29, 60, 71, 73, 482
BshFI	GGCC	1 cut(s)	1727
BshNI	GGYRCC	2 cut(s)	889, 1912
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	4 cut(s)	63, 624, 817, 1512
BslFI	GGGAC	6 cut(s)	213, 1161, 1303, 2105, 2145, 2243
BslI	CCNNNNNNNGG	2 cut(s)	746, 1090
BsmAI	GTCTC	4 cut(s)	60, 139, 316, 1607
BsmBI	CGTCTC	2 cut(s)	60, 139
BsmFI	GGGAC	6 cut(s)	213, 1161, 1303, 2105, 2145, 2243
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	1727
Bso31I	GGTCTC	1 cut(s)	316
Bsp1286I	GDGCHC	2 cut(s)	93, 1465
Bsp1407I	TGTACA	3 cut(s)	573, 918, 2138
Bsp1720I	GCTNAGC	1 cut(s)	1565
Bsp19I	CCATGG	1 cut(s)	515
BspACI	CCGC	9 cut(s)	27, 29, 32, 116, 151, 1098, 1264, 1459, 1540
BspANI	GGCC	1 cut(s)	1727
BspCNI	CTCAG	9 cut(s)	33, 437, 865, 1183, 1249, 1863, 1960, 2120, 2158
BspFNI	CGCG	5 cut(s)	29, 60, 71, 73, 482
BspHI	TCATGA	1 cut(s)	1350
BspLI	GGNNCC	3 cut(s)	891, 1914, 2070
BspMI	ACCTGC	2 cut(s)	1647, 2304
BspOI	GCTAGC	1 cut(s)	1098
BspPI	GGATC	4 cut(s)	731, 1125, 1252, 1667
BspQI	GCTCTTC	1 cut(s)	81
BspT107I	GGYRCC	2 cut(s)	889, 1912
BspTNI	GGTCTC	1 cut(s)	316
BsrBI	CCGCTC	1 cut(s)	1264
BsrDI	GCAATG	1 cut(s)	1936
BsrFI	RCCGGY	1 cut(s)	623
BsrGI	TGTACA	3 cut(s)	573, 918, 2138
BsrI	ACTGG	6 cut(s)	207, 705, 804, 900, 2119, 2241
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	8 cut(s)	27, 160, 515, 1045, 1434, 1767, 1890, 2041
BssNI	GRCGYC	2 cut(s)	132, 165
BssSI	CACGAG	2 cut(s)	136, 179
BssT1I	CCWWGG	2 cut(s)	515, 1767
Bst2BI	CACGAG	2 cut(s)	136, 179
Bst2UI	CCWGG	4 cut(s)	1047, 1436, 1891, 2042
Bst4CI	ACNGT	9 cut(s)	354, 657, 883, 1011, 1154, 1405, 1522, 2058, 2208
Bst6I	CTCTTC	4 cut(s)	8, 81, 1046, 1065
BstACI	GRCGYC	2 cut(s)	132, 165
BstAPI	GCANNNNNTGC	1 cut(s)	1453
BstAUI	TGTACA	3 cut(s)	573, 918, 2138
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	8 cut(s)	58, 219, 888, 905, 1096, 1292, 1449, 1461
BstDSI	CCRYGG	2 cut(s)	27, 515
BstENI	CCTNNNNNAGG	2 cut(s)	744, 1088
BstF5I	GGATG	6 cut(s)	190, 1030, 1591, 1723, 1777, 1807
BstFNI	CGCG	5 cut(s)	29, 60, 71, 73, 482
BstH2I	RGCGCY	2 cut(s)	84, 1237
BstHHI	GCGC	8 cut(s)	62, 73, 83, 381, 544, 822, 1236, 1749
BstMAI	GTCTC	4 cut(s)	60, 139, 316, 1607
BstNI	CCWGG	4 cut(s)	1047, 1436, 1891, 2042
BstNSI	RCATGY	3 cut(s)	410, 925, 1026
BstSCI	CCNGG	4 cut(s)	1045, 1434, 1889, 2040
BstSFI	CTRYAG	1 cut(s)	1196
BstSLI	GKGCMC	1 cut(s)	1465
BstUI	CGCG	5 cut(s)	29, 60, 71, 73, 482
BstV1I	GCAGC	7 cut(s)	393, 1122, 1258, 1381, 1468, 1573, 1981
BstV2I	GAAGAC	1 cut(s)	1339
BstX2I	RGATCY	3 cut(s)	736, 850, 1819
BstYI	RGATCY	3 cut(s)	736, 850, 1819
Bsu36I	CCTNAGG	1 cut(s)	1968
BsuRI	GGCC	1 cut(s)	1727
BtgI	CCRYGG	2 cut(s)	27, 515
BtgZI	GCGATG	1 cut(s)	463
BtsCI	GGATG	6 cut(s)	190, 1030, 1591, 1723, 1777, 1807
BtsIMutI	CAGTG	7 cut(s)	648, 893, 1527, 1749, 2054, 2213, 2234
BveI	ACCTGC	2 cut(s)	1647, 2304
Cac8I	GCNNGC	8 cut(s)	58, 219, 888, 905, 1096, 1292, 1449, 1461
CaiI	CAGNNNCTG	2 cut(s)	431, 2114
CciI	TCATGA	1 cut(s)	1350
CfoI	GCGC	8 cut(s)	62, 73, 83, 381, 544, 822, 1236, 1749
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	2 cut(s)	266, 1793
Cfr42I	CCGCGG	1 cut(s)	30
CseI	GACGC	6 cut(s)	62, 77, 115, 121, 154, 1186
Csp6I	GTAC	7 cut(s)	154, 350, 574, 919, 1518, 1913, 2139
CviQI	GTAC	7 cut(s)	154, 350, 574, 919, 1518, 1913, 2139
DraI	TTTAAA	1 cut(s)	1857
DrdI	GACNNNNNNGTC	2 cut(s)	74, 2211
DriI	GACNNNNNGTC	2 cut(s)	1154, 2098
DseDI	GACNNNNNNGTC	2 cut(s)	74, 2211
EaeI	YGGCCR	1 cut(s)	1725
Eam1104I	CTCTTC	4 cut(s)	8, 81, 1046, 1065
Eam1105I	GACNNNNNGTC	2 cut(s)	1154, 2098
EarI	CTCTTC	4 cut(s)	8, 81, 1046, 1065
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	515, 1767
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	316
Eco32I	GATATC	1 cut(s)	596
Eco47I	GGWCC	2 cut(s)	266, 1793
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	4 cut(s)	131, 669, 783, 1701
Eco72I	CACGTG	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	1968
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	2 cut(s)	744, 1088
EcoRII	CCWGG	4 cut(s)	1045, 1434, 1889, 2040
EcoRV	GATATC	1 cut(s)	596
EcoT14I	CCWWGG	2 cut(s)	515, 1767
EcoT22I	ATGCAT	1 cut(s)	2269
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	515, 1767
Esp3I	CGTCTC	2 cut(s)	60, 139
FalI	AAGNNNNNCTT	2 cut(s)	1828, 1860
FaqI	GGGAC	6 cut(s)	213, 1161, 1303, 2105, 2145, 2243
FauI	CCCGC	1 cut(s)	1452
FauNDI	CATATG	2 cut(s)	472, 1066
FbaI	TGATCA	1 cut(s)	1327
FblI	GTMKAC	1 cut(s)	2037
FokI	GGATG	6 cut(s)	197, 1017, 1598, 1730, 1784, 1814
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	7 cut(s)	564, 1095, 1362, 1505, 1632, 1863, 2028
FspI	TGCGCA	1 cut(s)	1748
GlaI	GCGC	8 cut(s)	61, 72, 82, 380, 543, 821, 1235, 1748
GsaI	CCCAGC	1 cut(s)	1371
GsuI	CTGGAG	3 cut(s)	753, 990, 2258
HaeII	RGCGCY	2 cut(s)	84, 1237
HaeIII	GGCC	1 cut(s)	1727
HapII	CCGG	4 cut(s)	63, 624, 817, 1512
HgaI	GACGC	6 cut(s)	62, 77, 115, 121, 154, 1186
HhaI	GCGC	8 cut(s)	62, 73, 83, 381, 544, 822, 1236, 1749
Hin1I	GRCGYC	2 cut(s)	132, 165
Hin6I	GCGC	8 cut(s)	60, 71, 81, 379, 542, 820, 1234, 1747
HinP1I	GCGC	8 cut(s)	60, 71, 81, 379, 542, 820, 1234, 1747
HincII	GTYRAC	3 cut(s)	169, 465, 1687
HindII	GTYRAC	3 cut(s)	169, 465, 1687
HindIII	AAGCTT	2 cut(s)	784, 1449
HinfI	GANTC	7 cut(s)	211, 1087, 1384, 1429, 1877, 2105, 2198
HpaII	CCGG	4 cut(s)	63, 624, 817, 1512
HphI	GGTGA	5 cut(s)	374, 1088, 1706, 2306, 2318
Hpy166II	GTNNAC	9 cut(s)	169, 266, 465, 919, 1079, 1103, 1687, 2038, 2141
Hpy188III	TCNNGA	6 cut(s)	494, 841, 969, 1208, 1351, 2202
Hpy8I	GTNNAC	9 cut(s)	169, 266, 465, 919, 1079, 1103, 1687, 2038, 2141
Hpy99I	CGWCG	5 cut(s)	53, 56, 109, 176, 1193
HpyCH4III	ACNGT	9 cut(s)	354, 657, 883, 1011, 1154, 1405, 1522, 2058, 2208
HpyCH4IV	ACGT	4 cut(s)	171, 262, 1191, 1516
HpySE526I	ACGT	4 cut(s)	171, 262, 1191, 1516
Hsp92I	GRCGYC	2 cut(s)	132, 165
HspAI	GCGC	8 cut(s)	60, 71, 81, 379, 542, 820, 1234, 1747
KpnI	GGTACC	1 cut(s)	1916
Ksp22I	TGATCA	1 cut(s)	1327
KspI	CCGCGG	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	5 cut(s)	337, 819, 940, 1261, 2068
Lsp1109I	GCAGC	7 cut(s)	393, 1122, 1258, 1381, 1468, 1573, 1981
LweI	GCATC	5 cut(s)	1327, 1708, 1987, 2254, 2308
MaeI	CTAG	7 cut(s)	564, 1095, 1362, 1505, 1632, 1863, 2028
MaeII	ACGT	4 cut(s)	171, 262, 1191, 1516
MaeIII	GTNAC	9 cut(s)	97, 258, 295, 444, 612, 715, 1507, 1634, 1659
MbiI	CCGCTC	1 cut(s)	1264
MboII	GAAGA	9 cut(s)	25, 98, 957, 1033, 1082, 1339, 1886, 1968, 2303
MflI	RGATCY	3 cut(s)	736, 850, 1819
MhlI	GDGCHC	2 cut(s)	93, 1465
MlyI	GAGTC	2 cut(s)	205, 2099
MmeI	TCCRAC	2 cut(s)	1820, 2127
Mph1103I	ATGCAT	1 cut(s)	2269
MroXI	GAANNNNTTC	1 cut(s)	1222
MseI	TTAA	7 cut(s)	341, 552, 788, 1481, 1856, 2229, 2289
MslI	CAYNNNNRTG	1 cut(s)	2304
MspA1I	CMGCKG	4 cut(s)	29, 761, 1459, 2187
MspI	CCGG	4 cut(s)	63, 624, 817, 1512
MspR9I	CCNGG	4 cut(s)	1047, 1436, 1891, 2042
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	4 cut(s)	1047, 1436, 1891, 2042
MvnI	CGCG	5 cut(s)	29, 60, 71, 73, 482
NcoI	CCATGG	1 cut(s)	515
NdeI	CATATG	2 cut(s)	472, 1066
NheI	GCTAGC	1 cut(s)	1094
NlaIV	GGNNCC	3 cut(s)	891, 1914, 2070
NmeAIII	GCCGAG	3 cut(s)	72, 141, 1753
NmuCI	GTSAC	4 cut(s)	97, 258, 295, 1634
NsbI	TGCGCA	1 cut(s)	1748
NsiI	ATGCAT	1 cut(s)	2269
NspI	RCATGY	3 cut(s)	410, 925, 1026
PagI	TCATGA	1 cut(s)	1350
PciI	ACATGT	1 cut(s)	921
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 177, 486
PctI	GAATGC	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	1222
PfeI	GAWTC	5 cut(s)	1087, 1384, 1429, 1877, 2198
PleI	GAGTC	2 cut(s)	205, 2099
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
PpsI	GAGTC	2 cut(s)	205, 2099
Ppu21I	YACGTR	1 cut(s)	263
PscI	ACATGT	1 cut(s)	921
PsiI	TTATAA	1 cut(s)	2321
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	4 cut(s)	1045, 1434, 1889, 2040
PspCI	CACGTG	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	1367
PspGI	CCWGG	4 cut(s)	1045, 1434, 1889, 2040
PspN4I	GGNNCC	3 cut(s)	891, 1914, 2070
PspPI	GGNCC	2 cut(s)	266, 1793
PstNI	CAGNNNCTG	2 cut(s)	431, 2114
PsuI	RGATCY	3 cut(s)	736, 850, 1819
PvuII	CAGCTG	2 cut(s)	761, 2187
RsaI	GTAC	7 cut(s)	155, 351, 575, 920, 1519, 1914, 2140
RsaNI	GTAC	7 cut(s)	154, 350, 574, 919, 1518, 1913, 2139
RseI	CAYNNNNRTG	1 cut(s)	2304
SacI	GAGCTC	1 cut(s)	93
SacII	CCGCGG	1 cut(s)	30
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	7 cut(s)	341, 552, 788, 1481, 1856, 2229, 2289
Sau96I	GGNCC	2 cut(s)	266, 1793
SchI	GAGTC	2 cut(s)	205, 2099
ScrFI	CCNGG	4 cut(s)	1047, 1436, 1891, 2042
SduI	GDGCHC	2 cut(s)	93, 1465
SfaNI	GCATC	5 cut(s)	1327, 1708, 1987, 2254, 2308
SfcI	CTRYAG	1 cut(s)	1196
Sfr303I	CCGCGG	1 cut(s)	30
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	2 cut(s)	266, 1793
SmiMI	CAYNNNNRTG	1 cut(s)	2304
SmlI	CTYRAG	2 cut(s)	1208, 1988
SmoI	CTYRAG	2 cut(s)	1208, 1988
SpeI	ACTAGT	1 cut(s)	1862
SsiI	CCGC	9 cut(s)	27, 29, 32, 116, 151, 1098, 1264, 1459, 1540
SspI	AATATT	3 cut(s)	930, 1000, 1223
SspMI	CTAG	7 cut(s)	564, 1095, 1362, 1505, 1632, 1863, 2028
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	4 cut(s)	1045, 1434, 1889, 2040
StyI	CCWWGG	2 cut(s)	515, 1767
TaaI	ACNGT	9 cut(s)	354, 657, 883, 1011, 1154, 1405, 1522, 2058, 2208
TaiI	ACGT	4 cut(s)	174, 265, 1194, 1519
TaqI	TCGA	5 cut(s)	126, 840, 1120, 1188, 1869
TaqII	GACCGA	1 cut(s)	1781
TatI	WGTACW	3 cut(s)	573, 918, 2138
TauI	GCSGC	3 cut(s)	29, 32, 118
TfiI	GAWTC	5 cut(s)	1087, 1384, 1429, 1877, 2198
Tru1I	TTAA	7 cut(s)	341, 552, 788, 1481, 1856, 2229, 2289
Tru9I	TTAA	7 cut(s)	341, 552, 788, 1481, 1856, 2229, 2289
TscAI	CASTG	7 cut(s)	655, 900, 1527, 1749, 2061, 2213, 2241
TseFI	GTSAC	4 cut(s)	97, 258, 295, 1634
TseI	GCWGC	7 cut(s)	381, 1135, 1271, 1394, 1456, 1561, 1994
Tsp45I	GTSAC	4 cut(s)	97, 258, 295, 1634
TspDTI	ATGAA	8 cut(s)	17, 552, 799, 1083, 1339, 1869, 1887, 1947
TspGWI	ACGGA	1 cut(s)	1814
TspRI	CASTG	7 cut(s)	655, 900, 1527, 1749, 2061, 2213, 2241
VpaK11BI	GGWCC	2 cut(s)	266, 1793
XagI	CCTNNNNNAGG	2 cut(s)	744, 1088
XapI	RAATTY	6 cut(s)	344, 1483, 1781, 1901, 1936, 2285
XceI	RCATGY	3 cut(s)	410, 925, 1026
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1577, 2126
XmiI	GTMKAC	1 cut(s)	2037
XmnI	GAANNNNTTC	1 cut(s)	1222
XspI	CTAG	7 cut(s)	564, 1095, 1362, 1505, 1632, 1863, 2028
Zsp2I	ATGCAT	1 cut(s)	2269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.