Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003809.1

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Forward (+)

81602 .. 89301

Gene Structure 7700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003809.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2421 bp

atgaattacgagaagaggctcagagccgcggcggagttcatactcgccgacgacgcacgcgccggagacgcgcgtgtcagcgccggagagctcggcgtgacggcgacgctgaagccgcaccaagtcgaaggcgtctcgtggctcatacggcggtacaacctcggcgtcaacgtcgttctcgtggatgttttacagatgggactgggaaagactctacaagctgtcgctttattgagctatttgaaggttcaaaagatgtcacgtggaccattcttggtgttgtgtcctctaagtgtgactgatggttgggtctcggagatggaaaactttgctccaaaattaaaatttgtacggtttgttggtgataaagaatataggcgcagcttacgcaggacaatatatgagcatgtgaaagtgcattcctcggtatctgatatgttgtcgttaccttttgatgtcctgttgacaacatatgacatcgcgttggccgatcaggatttcctttctcaaataccatggaactatgcagtaattgatgaagcgcaaaggcttaaaaacccttccagtgttctgtacaatgtcctaagagagcggtatctcattccaagaaggttactgatgactggcacacctattcaaaacaatctcactgaactgtgggctttgatgtatttttgtatgccttcagtctttctgaaactggacgagttccttgttacattcaaggaagctggagatccttcgtcaggatataatacagctgaagtcatagaacaactcaaaagcttaaaacgcatactgggggctttcatgctccggcgcacaaaatctaaactcatcgagattggagatctattcctgccaccccttactgagataactgtgctggcaccactggtcagcttgcaaaagaaggtgtacatgtcaatattgaggaaggagcttcctaagctacttgcactatcttctggaggttcaaatcatcaatccttacagaatattgtagtacagttgcgaaaagcatgtagccatccttatctcttccctagtattgagccagaaccatatgaagagggtgaacacctgattcaggattttcttgagttgcgaaaatattcctatgagcgccttgatggatcaattcgggctgaggagcggtttgctgctataagaagtttcagcaggcaatcagcaaaacaaagtttgaagtcccaagctgatcaaaatgatgcttttgtcttcatgatctccactagagctgggggagttggcttgaatcttgtcgctgctgatactgttatattctacgagcaagattggaatccccaggttgataagcaagctttgcagcgggcacacaggattggtcaattaaattctgtgctgtcaataaacctagttaccggacgtacagtggaggaggttatcatgcggagagcagaaaggaagttgcagcttagccataatgttattggggatgatgttatggacgaggaaggtaaagagacagcaggagttgaacctagtgacctgcgatctatcatatttgggttacatctgtttgatcctgctgaagtcaacaatagtgagtgtgagatttcagaattggatgctttggccgagaaggcgatttcagtgcgcaataaagaaacagcaaccaaggatgagaggaaatttgaggtcggtccaacggatgtattgaatggacaagatctggttgcaggaggaagttctacttctctcagtttaaatactagtttcgatgaagattcatatctctcctgggttgagaaattcaaggaggtaccacaagcaaatagcaatgaaaattcagatatgggaagccgaagaaacttacccgaggaaaggcgtctaaaacttgaggctgcaaaaaaaagagcagaggaaaagaagttatctaggtgggtagacctgggctaccaatcactgtctgttgaggagcctatcagtcctgttgatggggacatcatgtccgactcaggttctgtccagtttgtttatggagattgtacacaaccatcaaaagtttgtccctctgagcctaccattattttcagctgtgttgatgattctggacagtggggtcatggaggaatgtttaatgcactggagaggctatctgcaagtgtccccgatgcatatcaacgagcttctgaatttaacgacctgcatcttggtgatcttcaccttataagacttgatgaggattcgaatgaacagaagatggacagcaatccccctcgatgggtggctttagctgttgtacaatcttataatcccaggcgtaaagtaccccggagcaagatttctattcctgacttggaacgttgcttatcaaaggcatcattttcagccgcccaaagttctggtaacgatcttttctattcggttcaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

806

Amino Acids

90.52

Weight (kDa)

5.59

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2213, 2295
AasI	GACNNNNNNGTC	2 cut(s)	74, 2103
Acc16I	TGCGCA	1 cut(s)	1640
Acc36I	ACCTGC	2 cut(s)	1539, 2196
Acc65I	GGTACC	1 cut(s)	1804
AccB1I	GGYRCC	2 cut(s)	889, 1804
AccBSI	CCGCTC	2 cut(s)	592, 1156
AccI	GTMKAC	1 cut(s)	1929
AccII	CGCG	5 cut(s)	29, 60, 71, 73, 482
AclI	AACGTT	1 cut(s)	2347
AclWI	GGATC	3 cut(s)	731, 1144, 1559
AcoI	YGGCCR	2 cut(s)	486, 1617
AcsI	RAATTY	6 cut(s)	344, 1375, 1673, 1793, 1828, 2177
AcuI	CTGAAG	4 cut(s)	131, 669, 783, 1593
AcvI	CACGTG	1 cut(s)	263
AcyI	GRCGYC	3 cut(s)	132, 165, 1870
AfiI	CCNNNNNNNGG	6 cut(s)	746, 1090, 1866, 1979, 2265, 2266
AflIII	ACRYGT	1 cut(s)	921
AhdI	GACNNNNNGTC	1 cut(s)	1990
AhlI	ACTAGT	1 cut(s)	1754
AjnI	CCWGG	4 cut(s)	1326, 1781, 1932, 2300
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	4 cut(s)	60, 139, 316, 1499
AlwI	GGATC	3 cut(s)	731, 1144, 1559
AlwNI	CAGNNNCTG	1 cut(s)	2006
Ama87I	CYCGRG	1 cut(s)	1859
AoxI	GGCC	2 cut(s)	486, 1617
ApeKI	GCWGC	6 cut(s)	381, 1163, 1286, 1348, 1453, 1886
ApoI	RAATTY	6 cut(s)	344, 1375, 1673, 1793, 1828, 2177
Asp700I	GAANNNNTTC	1 cut(s)	1114
Asp718I	GGTACC	1 cut(s)	1804
AspLEI	GCGC	8 cut(s)	62, 73, 83, 381, 544, 822, 1128, 1641
AspS9I	GGNCC	2 cut(s)	266, 1685
AsuC2I	CCSGG	1 cut(s)	2317
AsuHPI	GGTGA	4 cut(s)	374, 1088, 2198, 2210
AsuII	TTCGAA	1 cut(s)	2231
AvaI	CYCGRG	1 cut(s)	1859
AvaII	GGWCC	2 cut(s)	266, 1685
BaeGI	GKGCMC	1 cut(s)	1357
BanI	GGYRCC	2 cut(s)	889, 1804
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	2 cut(s)	136, 179
BbrPI	CACGTG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	1231
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	1149
BbvI	GCAGC	6 cut(s)	393, 1150, 1273, 1360, 1465, 1873
BccI	CCATC	9 cut(s)	190, 296, 313, 1038, 1127, 1973, 2047, 2239, 2259
BceAI	ACGGC	2 cut(s)	117, 164
BcgI	CGANNNNNNTGC	2 cut(s)	1618, 1652
BciT130I	CCWGG	4 cut(s)	1328, 1783, 1934, 2302
BclI	TGATCA	1 cut(s)	1219
BcnI	CCSGG	1 cut(s)	2317
BcoDI	GTCTC	4 cut(s)	60, 139, 316, 1499
BcuI	ACTAGT	1 cut(s)	1754
BfaI	CTAG	6 cut(s)	1047, 1254, 1397, 1524, 1755, 1920
BfoI	RGCGCY	2 cut(s)	84, 1129
BfuAI	ACCTGC	2 cut(s)	1539, 2196
BglI	GCCNNNNNGGC	1 cut(s)	1625
BglII	AGATCT	2 cut(s)	850, 1711
BlpI	GCTNAGC	1 cut(s)	1457
Bme1390I	CCNGG	5 cut(s)	1328, 1783, 1934, 2302, 2317
Bme18I	GGWCC	2 cut(s)	266, 1685
BmeRI	GACNNNNNGTC	1 cut(s)	1990
BmeT110I	CYCGRG	1 cut(s)	1859
BmgT120I	GGNCC	2 cut(s)	266, 1685
BmiI	GGNNCC	3 cut(s)	891, 1806, 1962
BmrFI	CCNGG	5 cut(s)	1328, 1783, 1934, 2302, 2317
BmrI	ACTGGG	2 cut(s)	212, 809
BmsI	GCATC	5 cut(s)	1219, 1600, 2146, 2200, 2372
BmuI	ACTGGG	2 cut(s)	212, 809
BpiI	GAAGAC	1 cut(s)	1231
BpmI	CTGGAG	3 cut(s)	753, 990, 2150
Bpu10I	CCTNAGC	2 cut(s)	948, 1149
Bpu1102I	GCTNAGC	1 cut(s)	1457
Bpu14I	TTCGAA	1 cut(s)	2231
BpuEI	CTTGAG	2 cut(s)	1121, 1901
BpuMI	CCSGG	1 cut(s)	2317
BsaAI	YACGTR	1 cut(s)	263
BsaBI	GATNNNNATC	3 cut(s)	1320, 1773, 2160
BsaHI	GRCGYC	3 cut(s)	132, 165, 1870
BsaI	GGTCTC	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	1403
Bsc4I	CCNNNNNNNGG	6 cut(s)	746, 1090, 1866, 1979, 2265, 2266
Bse1I	ACTGG	8 cut(s)	207, 564, 628, 705, 804, 900, 2011, 2133
Bse3DI	GCAATG	1 cut(s)	1828
Bse8I	GATNNNNATC	3 cut(s)	1320, 1773, 2160
BseBI	CCWGG	4 cut(s)	1328, 1783, 1934, 2302
BseGI	GGATG	6 cut(s)	190, 1030, 1483, 1615, 1669, 1699
BseJI	GATNNNNATC	3 cut(s)	1320, 1773, 2160
BseLI	CCNNNNNNNGG	6 cut(s)	746, 1090, 1866, 1979, 2265, 2266
BseMI	GCAATG	1 cut(s)	1828
BseMII	CTCAG	6 cut(s)	34, 864, 1140, 1756, 2013, 2049
BseNI	ACTGG	8 cut(s)	207, 564, 628, 705, 804, 900, 2011, 2133
BseRI	GAGGAG	3 cut(s)	1166, 1433, 1973
BseSI	GKGCMC	1 cut(s)	1357
BseXI	GCAGC	6 cut(s)	393, 1150, 1273, 1360, 1465, 1873
BseYI	CCCAGC	1 cut(s)	1259
Bsh1236I	CGCG	5 cut(s)	29, 60, 71, 73, 482
BshFI	GGCC	2 cut(s)	488, 1619
BshNI	GGYRCC	2 cut(s)	889, 1804
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	1859
BsiSI	CCGG	5 cut(s)	63, 84, 817, 1404, 2317
BslFI	GGGAC	5 cut(s)	213, 1195, 1997, 2037, 2135
BslI	CCNNNNNNNGG	6 cut(s)	746, 1090, 1866, 1979, 2265, 2266
BsmAI	GTCTC	4 cut(s)	60, 139, 316, 1499
BsmBI	CGTCTC	2 cut(s)	60, 139
BsmFI	GGGAC	5 cut(s)	213, 1195, 1997, 2037, 2135
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	488, 1619
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	1859
Bsp119I	TTCGAA	1 cut(s)	2231
Bsp1286I	GDGCHC	2 cut(s)	93, 1357
Bsp1407I	TGTACA	4 cut(s)	573, 918, 2030, 2284
Bsp1720I	GCTNAGC	1 cut(s)	1457
Bsp19I	CCATGG	1 cut(s)	515
BspANI	GGCC	2 cut(s)	488, 1619
BspCNI	CTCAG	6 cut(s)	33, 865, 1141, 1755, 2012, 2050
BspFNI	CGCG	5 cut(s)	29, 60, 71, 73, 482
BspHI	TCATGA	1 cut(s)	1242
BspLI	GGNNCC	3 cut(s)	891, 1806, 1962
BspMI	ACCTGC	2 cut(s)	1539, 2196
BspPI	GGATC	3 cut(s)	731, 1144, 1559
BspT104I	TTCGAA	1 cut(s)	2231
BspT107I	GGYRCC	2 cut(s)	889, 1804
BspTNI	GGTCTC	1 cut(s)	316
BsrBI	CCGCTC	2 cut(s)	592, 1156
BsrDI	GCAATG	1 cut(s)	1828
BsrGI	TGTACA	4 cut(s)	573, 918, 2030, 2284
BsrI	ACTGG	8 cut(s)	207, 564, 628, 705, 804, 900, 2011, 2133
BssNI	GRCGYC	3 cut(s)	132, 165, 1870
BssSI	CACGAG	2 cut(s)	136, 179
BssT1I	CCWWGG	2 cut(s)	515, 1659
Bst2BI	CACGAG	2 cut(s)	136, 179
Bst2UI	CCWGG	4 cut(s)	1328, 1783, 1934, 2302
Bst4CI	ACNGT	8 cut(s)	354, 657, 883, 1011, 1297, 1414, 1950, 2100
Bst6I	CTCTTC	3 cut(s)	8, 1046, 1065
BstACI	GRCGYC	3 cut(s)	132, 165, 1870
BstAPI	GCANNNNNTGC	1 cut(s)	1345
BstAUI	TGTACA	4 cut(s)	573, 918, 2030, 2284
BstBAI	YACGTR	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	2231
BstC8I	GCNNGC	6 cut(s)	58, 888, 905, 1184, 1341, 1353
BstDSI	CCRYGG	2 cut(s)	27, 515
BstENI	CCTNNNNNAGG	2 cut(s)	744, 1088
BstF5I	GGATG	6 cut(s)	190, 1030, 1483, 1615, 1669, 1699
BstFNI	CGCG	5 cut(s)	29, 60, 71, 73, 482
BstH2I	RGCGCY	2 cut(s)	84, 1129
BstHHI	GCGC	8 cut(s)	62, 73, 83, 381, 544, 822, 1128, 1641
BstMAI	GTCTC	4 cut(s)	60, 139, 316, 1499
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 68, 115, 148, 387, 792, 949, 1345, 1625
BstNI	CCWGG	4 cut(s)	1328, 1783, 1934, 2302
BstNSI	RCATGY	3 cut(s)	410, 925, 1026
BstSCI	CCNGG	5 cut(s)	1326, 1781, 1932, 2300, 2315
BstSLI	GKGCMC	1 cut(s)	1357
BstUI	CGCG	5 cut(s)	29, 60, 71, 73, 482
BstV1I	GCAGC	6 cut(s)	393, 1150, 1273, 1360, 1465, 1873
BstV2I	GAAGAC	1 cut(s)	1231
BstX2I	RGATCY	3 cut(s)	736, 850, 1711
BstXI	CCANNNNNNTGG	1 cut(s)	2387
BstYI	RGATCY	3 cut(s)	736, 850, 1711
BsuRI	GGCC	2 cut(s)	488, 1619
BtgI	CCRYGG	2 cut(s)	27, 515
BtgZI	GCGATG	1 cut(s)	463
BtsCI	GGATG	6 cut(s)	190, 1030, 1483, 1615, 1669, 1699
BtsIMutI	CAGTG	8 cut(s)	571, 648, 893, 1419, 1641, 1946, 2105, 2126
BveI	ACCTGC	2 cut(s)	1539, 2196
Cac8I	GCNNGC	6 cut(s)	58, 888, 905, 1184, 1341, 1353
CaiI	CAGNNNCTG	1 cut(s)	2006
CciI	TCATGA	1 cut(s)	1242
CfoI	GCGC	8 cut(s)	62, 73, 83, 381, 544, 822, 1128, 1641
Cfr13I	GGNCC	2 cut(s)	266, 1685
Cfr42I	CCGCGG	1 cut(s)	30
CseI	GACGC	6 cut(s)	62, 77, 115, 121, 154, 1859
CviAII	CATG	9 cut(s)	407, 516, 811, 922, 1023, 1243, 1429, 1990, 2108
DraI	TTTAAA	1 cut(s)	1749
DrdI	GACNNNNNNGTC	2 cut(s)	74, 2103
DriI	GACNNNNNGTC	1 cut(s)	1990
DseDI	GACNNNNNNGTC	2 cut(s)	74, 2103
EaeI	YGGCCR	2 cut(s)	486, 1617
Eam1104I	CTCTTC	3 cut(s)	8, 1046, 1065
Eam1105I	GACNNNNNGTC	1 cut(s)	1990
EarI	CTCTTC	3 cut(s)	8, 1046, 1065
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	515, 1659
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	266, 1685
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	4 cut(s)	131, 669, 783, 1593
Eco72I	CACGTG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	1859
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	2 cut(s)	744, 1088
EcoRII	CCWGG	4 cut(s)	1326, 1781, 1932, 2300
EcoT14I	CCWWGG	2 cut(s)	515, 1659
EcoT22I	ATGCAT	1 cut(s)	2161
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	515, 1659
Esp3I	CGTCTC	2 cut(s)	60, 139
FaeI	CATG	9 cut(s)	410, 519, 814, 925, 1026, 1246, 1432, 1993, 2111
FalI	AAGNNNNNCTT	2 cut(s)	1720, 1752
FaqI	GGGAC	5 cut(s)	213, 1195, 1997, 2037, 2135
FatI	CATG	9 cut(s)	406, 515, 810, 921, 1022, 1242, 1428, 1989, 2107
FauI	CCCGC	1 cut(s)	1344
FauNDI	CATATG	2 cut(s)	472, 1066
FbaI	TGATCA	1 cut(s)	1219
FblI	GTMKAC	1 cut(s)	1929
FokI	GGATG	6 cut(s)	197, 1017, 1490, 1622, 1676, 1706
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	6 cut(s)	1047, 1254, 1397, 1524, 1755, 1920
FspI	TGCGCA	1 cut(s)	1640
GlaI	GCGC	8 cut(s)	61, 72, 82, 380, 543, 821, 1127, 1640
GsaI	CCCAGC	1 cut(s)	1263
GsuI	CTGGAG	3 cut(s)	753, 990, 2150
HaeII	RGCGCY	2 cut(s)	84, 1129
HaeIII	GGCC	2 cut(s)	488, 1619
HapII	CCGG	5 cut(s)	63, 84, 817, 1404, 2317
HgaI	GACGC	6 cut(s)	62, 77, 115, 121, 154, 1859
HhaI	GCGC	8 cut(s)	62, 73, 83, 381, 544, 822, 1128, 1641
Hin1I	GRCGYC	3 cut(s)	132, 165, 1870
Hin1II	CATG	9 cut(s)	410, 519, 814, 925, 1026, 1246, 1432, 1993, 2111
Hin6I	GCGC	8 cut(s)	60, 71, 81, 379, 542, 820, 1126, 1639
HinP1I	GCGC	8 cut(s)	60, 71, 81, 379, 542, 820, 1126, 1639
HincII	GTYRAC	3 cut(s)	169, 465, 1579
HindII	GTYRAC	3 cut(s)	169, 465, 1579
HindIII	AAGCTT	2 cut(s)	784, 1341
HinfI	GANTC	8 cut(s)	211, 1087, 1276, 1321, 1769, 1997, 2090, 2228
HpaII	CCGG	5 cut(s)	63, 84, 817, 1404, 2317
HphI	GGTGA	4 cut(s)	374, 1088, 2198, 2210
Hpy166II	GTNNAC	8 cut(s)	169, 266, 465, 919, 1079, 1579, 1930, 2033
Hpy188I	TCNGA	9 cut(s)	23, 316, 433, 696, 1603, 1834, 1996, 2059, 2176
Hpy188III	TCNNGA	9 cut(s)	494, 747, 841, 969, 1091, 1100, 1243, 2094, 2336
Hpy8I	GTNNAC	8 cut(s)	169, 266, 465, 919, 1079, 1579, 1930, 2033
Hpy99I	CGWCG	4 cut(s)	53, 56, 109, 176
HpyCH4III	ACNGT	8 cut(s)	354, 657, 883, 1011, 1297, 1414, 1950, 2100
HpyCH4IV	ACGT	4 cut(s)	171, 262, 1408, 2347
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 68, 115, 148, 387, 792, 949, 1345, 1625
HpySE526I	ACGT	4 cut(s)	171, 262, 1408, 2347
Hsp92I	GRCGYC	3 cut(s)	132, 165, 1870
Hsp92II	CATG	9 cut(s)	410, 519, 814, 925, 1026, 1246, 1432, 1993, 2111
HspAI	GCGC	8 cut(s)	60, 71, 81, 379, 542, 820, 1126, 1639
KpnI	GGTACC	1 cut(s)	1808
Ksp22I	TGATCA	1 cut(s)	1219
KspI	CCGCGG	1 cut(s)	30
LmnI	GCTCC	6 cut(s)	337, 819, 940, 1153, 1960, 2319
Lsp1109I	GCAGC	6 cut(s)	393, 1150, 1273, 1360, 1465, 1873
LweI	GCATC	5 cut(s)	1219, 1600, 2146, 2200, 2372
MaeI	CTAG	6 cut(s)	1047, 1254, 1397, 1524, 1755, 1920
MaeII	ACGT	4 cut(s)	171, 262, 1408, 2347
MbiI	CCGCTC	2 cut(s)	592, 1156
MboII	GAAGA	9 cut(s)	25, 957, 1033, 1082, 1231, 1778, 1860, 2195, 2254
MflI	RGATCY	3 cut(s)	736, 850, 1711
MhlI	GDGCHC	2 cut(s)	93, 1357
MlyI	GAGTC	2 cut(s)	205, 1991
MmeI	TCCRAC	2 cut(s)	1712, 2019
Mph1103I	ATGCAT	1 cut(s)	2161
MroXI	GAANNNNTTC	1 cut(s)	1114
MseI	TTAA	7 cut(s)	341, 552, 788, 1373, 1748, 2121, 2181
MslI	CAYNNNNRTG	1 cut(s)	2196
MspA1I	CMGCKG	4 cut(s)	29, 761, 1351, 2079
MspI	CCGG	5 cut(s)	63, 84, 817, 1404, 2317
MspR9I	CCNGG	5 cut(s)	1328, 1783, 1934, 2302, 2317
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	4 cut(s)	1328, 1783, 1934, 2302
MvnI	CGCG	5 cut(s)	29, 60, 71, 73, 482
MwoI	GCNNNNNNNGC	9 cut(s)	53, 68, 115, 148, 387, 792, 949, 1345, 1625
NciI	CCSGG	1 cut(s)	2317
NcoI	CCATGG	1 cut(s)	515
NdeI	CATATG	2 cut(s)	472, 1066
NlaIII	CATG	9 cut(s)	410, 519, 814, 925, 1026, 1246, 1432, 1993, 2111
NlaIV	GGNNCC	3 cut(s)	891, 1806, 1962
NmeAIII	GCCGAG	3 cut(s)	72, 141, 1645
NmuCI	GTSAC	4 cut(s)	97, 258, 295, 1526
NsbI	TGCGCA	1 cut(s)	1640
NsiI	ATGCAT	1 cut(s)	2161
NspI	RCATGY	3 cut(s)	410, 925, 1026
NspV	TTCGAA	1 cut(s)	2231
PagI	TCATGA	1 cut(s)	1242
PciI	ACATGT	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 177, 486
PctI	GAATGC	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	1114
PfeI	GAWTC	6 cut(s)	1087, 1276, 1321, 1769, 2090, 2228
PleI	GAGTC	2 cut(s)	205, 1991
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
PpsI	GAGTC	2 cut(s)	205, 1991
Ppu21I	YACGTR	1 cut(s)	263
PscI	ACATGT	1 cut(s)	921
PsiI	TTATAA	2 cut(s)	2213, 2295
Psp124BI	GAGCTC	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	2347
Psp6I	CCWGG	4 cut(s)	1326, 1781, 1932, 2300
PspCI	CACGTG	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	1259
PspGI	CCWGG	4 cut(s)	1326, 1781, 1932, 2300
PspN4I	GGNNCC	3 cut(s)	891, 1806, 1962
PspPI	GGNCC	2 cut(s)	266, 1685
PstNI	CAGNNNCTG	1 cut(s)	2006
PsuI	RGATCY	3 cut(s)	736, 850, 1711
PvuII	CAGCTG	2 cut(s)	761, 2079
RseI	CAYNNNNRTG	1 cut(s)	2196
SacI	GAGCTC	1 cut(s)	93
SacII	CCGCGG	1 cut(s)	30
SaqAI	TTAA	7 cut(s)	341, 552, 788, 1373, 1748, 2121, 2181
Sau96I	GGNCC	2 cut(s)	266, 1685
SchI	GAGTC	2 cut(s)	205, 1991
ScrFI	CCNGG	5 cut(s)	1328, 1783, 1934, 2302, 2317
SduI	GDGCHC	2 cut(s)	93, 1357
SfaNI	GCATC	5 cut(s)	1219, 1600, 2146, 2200, 2372
Sfr303I	CCGCGG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	2231
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	2 cut(s)	266, 1685
SmiMI	CAYNNNNRTG	1 cut(s)	2196
SmlI	CTYRAG	2 cut(s)	1100, 1880
SmoI	CTYRAG	2 cut(s)	1100, 1880
SpeI	ACTAGT	1 cut(s)	1754
SspI	AATATT	3 cut(s)	930, 1000, 1115
SspMI	CTAG	6 cut(s)	1047, 1254, 1397, 1524, 1755, 1920
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	5 cut(s)	1326, 1781, 1932, 2300, 2315
StyI	CCWWGG	2 cut(s)	515, 1659
TaaI	ACNGT	8 cut(s)	354, 657, 883, 1011, 1297, 1414, 1950, 2100
TaiI	ACGT	4 cut(s)	174, 265, 1411, 2350
TaqI	TCGA	5 cut(s)	126, 840, 1761, 2231, 2263
TaqII	GACCGA	1 cut(s)	1673
TatI	WGTACW	5 cut(s)	573, 918, 1006, 2030, 2284
TauI	GCSGC	4 cut(s)	29, 32, 118, 2378
TfiI	GAWTC	6 cut(s)	1087, 1276, 1321, 1769, 2090, 2228
Tru1I	TTAA	7 cut(s)	341, 552, 788, 1373, 1748, 2121, 2181
Tru9I	TTAA	7 cut(s)	341, 552, 788, 1373, 1748, 2121, 2181
TscAI	CASTG	8 cut(s)	571, 655, 900, 1419, 1641, 1953, 2105, 2133
TseFI	GTSAC	4 cut(s)	97, 258, 295, 1526
TseI	GCWGC	6 cut(s)	381, 1163, 1286, 1348, 1453, 1886
Tsp45I	GTSAC	4 cut(s)	97, 258, 295, 1526
TspGWI	ACGGA	1 cut(s)	1706
TspRI	CASTG	8 cut(s)	571, 655, 900, 1419, 1641, 1953, 2105, 2133
VpaK11BI	GGWCC	2 cut(s)	266, 1685
XagI	CCTNNNNNAGG	2 cut(s)	744, 1088
XapI	RAATTY	6 cut(s)	344, 1375, 1673, 1793, 1828, 2177
XceI	RCATGY	3 cut(s)	410, 925, 1026
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1469, 2018
XmiI	GTMKAC	1 cut(s)	1929
XmnI	GAANNNNTTC	1 cut(s)	1114
XspI	CTAG	6 cut(s)	1047, 1254, 1397, 1524, 1755, 1920
Zsp2I	ATGCAT	1 cut(s)	2161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.