Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007373

Physical Location & Seq

Genomic Coordinates Forward (+)

10557909 .. 10558799

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11333.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTTCTTCCACATCCTGCTTCCAAGATCCGAAACCGGTTCAACTGGCCCTAGATGGCGTTCTTCAAGCCACCAATGTGGTCCGTACCTCTATGGACCGGCTACATGTGTTGGCAAGCTCTGAATCGGATTCTTCTGGCAGTGACGTGGCTCTGATGGACTGTGAAAGACTATATGATGAGAGTGTGCCGAGGCTGACTGAGTTGATATCCGGCGAGGGTAACTATACCGAAGAAGATGCTCGGACATGGCTCAGCGGTGTGCTTGCTAACCATAGGAGTTGTTGGGATAGCTTGGAAAAGAAGGGTGTTGTTAAGAATACTAGTGGTGCTCAACAGTATAGGGCGGTGGCACAAAACTTGACCGTGGTGCTTGGTGAAGCTCTTGCTCTGTATGGGAAGAGTACTATGACTACTGATGAGGCAATGAAAGTGCGGCATGGACAAACTTCCAATGCAAAGCCATATGGAGGGCTTTTAGCATCGTGGAGTCCGGCAAGATCCAGGGCTGACTTTGTGGTGGCAAAAGATGGTTCAGGCACTCACACAACAATTAACCATGCCGTGGCTGCACTTGCTAGAATGGGCGACAGACGACCTCCAAGGGCCATAATCTATGTGAAATCCGGCGTCTACAATGAGAAGGTAGAAATCGGTGGACACATGAAGAATGTGATGCTTGTTGGGGATGGCATGGACAGAACTGTAATCACGGTAGCCGCAGTGTCGTCGATGGTGACACCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

250

Amino Acids

26.72

Weight (kDa)

6.59

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	14 - 111	1.3e-12	Plant invertase/pectin methylesterase inhibitor
Pectinesterase	PF01095	171 - 240	4.8e-18	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60730
fragaria_vesca	FvH4_7g11333 FvH4_7g11340 FvH4_7g11360
malus_domestica	MD07G1118200.v1.1
prunus_persica	Prupe.2G141200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349551 RchiOBHm_Chr1g0349581
rosa_laevigata	RLG00000028540 RLG00000028543
rosa_multiflora	Rmu_sc0002495.1_g000023 Rmu_sc0006074.1_g000009
rosa_roxburghii	Rroxscaffold_4G00305450
rosa_rugosa	Rorug01G0204500
rosa_samantha	Rh1AG221800 Rh1AG222000 Rh1BG187900 Rh1BG188200 Rh1CG206600 Rh1CG206900 Rh1DG217300 Rh1DG217500
rosa_wichuraiana	Rw0G014800 Rw1G018850 Rw1G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	633
AciI	CCGC	4 cut(s)	258, 347, 436, 720
AclWI	GGATC	2 cut(s)	23, 495
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	2 cut(s)	88, 406
AfiI	CCNNNNNNNGG	2 cut(s)	470, 565
AflIII	ACRYGT	1 cut(s)	106
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	44, 68
AhlI	ACTAGT	1 cut(s)	323
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	503
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	3 cut(s)	120, 294, 383
AluI	AGCT	3 cut(s)	120, 294, 383
Alw21I	GWGCWC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	23, 495
AoxI	GGCC	2 cut(s)	48, 606
ApeKI	GCWGC	1 cut(s)	569
AsiGI	ACCGGT	1 cut(s)	37
AspS9I	GGNCC	4 cut(s)	49, 82, 97, 606
AsuHPI	GGTGA	2 cut(s)	389, 748
AvaII	GGWCC	2 cut(s)	82, 97
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	5 cut(s)	50, 151, 524, 683, 727
BceAI	ACGGC	1 cut(s)	548
BcgI	CGANNNNNNTGC	4 cut(s)	221, 255, 711, 745
BciT130I	CCWGG	1 cut(s)	505
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	3 cut(s)	53, 324, 579
BisI	GCNGC	3 cut(s)	437, 570, 720
BlpI	GCTNAGC	1 cut(s)	254
BlsI	GCNGC	3 cut(s)	438, 571, 721
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	505
Bme18I	GGWCC	2 cut(s)	82, 97
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	4 cut(s)	49, 82, 97, 606
BmrFI	CCNGG	1 cut(s)	505
BmsI	GCATC	3 cut(s)	229, 491, 666
Bpu1102I	GCTNAGC	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	5 cut(s)	191, 366, 504, 564, 602
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 565
Bse118I	RCCGGY	2 cut(s)	37, 99
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	5 cut(s)	191, 366, 504, 564, 602
BseGI	GGATG	2 cut(s)	14, 694
BseLI	CCNNNNNNNGG	2 cut(s)	470, 565
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	192, 268
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	556
BsgI	GTGCAG	1 cut(s)	555
BshFI	GGCC	2 cut(s)	50, 608
BshTI	ACCGGT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	5 cut(s)	38, 100, 213, 494, 627
BslI	CCNNNNNNNGG	2 cut(s)	470, 565
BsnI	GGCC	2 cut(s)	50, 608
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	28, 500
Bsp1720I	GCTNAGC	1 cut(s)	254
BspACI	CCGC	4 cut(s)	258, 347, 436, 720
BspANI	GGCC	2 cut(s)	50, 608
BspCNI	CTCAG	2 cut(s)	193, 267
BspPI	GGATC	2 cut(s)	23, 495
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	2 cut(s)	37, 99
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	2 cut(s)	37, 99
BssECI	CCNNGG	5 cut(s)	191, 366, 504, 564, 602
BssMI	GATC	2 cut(s)	28, 500
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	5 cut(s)	164, 339, 367, 706, 715
Bst6I	CTCTTC	1 cut(s)	395
BstACI	GRCGYC	1 cut(s)	630
BstC8I	GCNNGC	2 cut(s)	118, 267
BstDEI	CTNAG	2 cut(s)	201, 254
BstDSI	CCRYGG	2 cut(s)	366, 564
BstF5I	GGATG	2 cut(s)	14, 694
BstKTI	GATC	2 cut(s)	31, 503
BstMBI	GATC	2 cut(s)	28, 500
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 575
BstNI	CCWGG	1 cut(s)	505
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	556
BstX2I	RGATCY	2 cut(s)	28, 500
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	2 cut(s)	28, 500
BsuRI	GGCC	2 cut(s)	50, 608
BtgI	CCRYGG	2 cut(s)	366, 564
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	14, 694
BtsI	GCAGTG	2 cut(s)	148, 729
BtsIMutI	CAGTG	2 cut(s)	148, 729
Cac8I	GCNNGC	2 cut(s)	118, 267
Cfr10I	RCCGGY	2 cut(s)	37, 99
Cfr13I	GGNCC	4 cut(s)	49, 82, 97, 606
CseI	GACGC	1 cut(s)	619
Csp6I	GTAC	2 cut(s)	87, 405
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	6 cut(s)	107, 249, 440, 560, 664, 694
CviQI	GTAC	2 cut(s)	87, 405
DdeI	CTNAG	2 cut(s)	201, 254
DpnI	GATC	2 cut(s)	30, 502
DpnII	GATC	2 cut(s)	28, 500
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	602
Eco32I	GATATC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	82, 97
EcoRII	CCWGG	1 cut(s)	503
EcoRV	GATATC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	602
FaeI	CATG	6 cut(s)	110, 252, 443, 563, 667, 697
FatI	CATG	6 cut(s)	106, 248, 439, 559, 663, 693
FauNDI	CATATG	1 cut(s)	466
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	437, 570, 720
FokI	GGATG	1 cut(s)	701
Fsp4HI	GCNGC	3 cut(s)	437, 570, 720
FspBI	CTAG	3 cut(s)	53, 324, 579
GluI	GCNGC	3 cut(s)	437, 570, 720
HaeIII	GGCC	2 cut(s)	50, 608
HapII	CCGG	5 cut(s)	38, 100, 213, 494, 627
HgaI	GACGC	1 cut(s)	619
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	6 cut(s)	110, 252, 443, 563, 667, 697
HinfI	GANTC	3 cut(s)	125, 131, 490
HpaII	CCGG	5 cut(s)	38, 100, 213, 494, 627
HphI	GGTGA	2 cut(s)	389, 748
Hpy166II	GTNNAC	2 cut(s)	634, 659
Hpy188I	TCNGA	5 cut(s)	33, 124, 130, 156, 246
Hpy8I	GTNNAC	2 cut(s)	634, 659
Hpy99I	CGWCG	1 cut(s)	733
HpyAV	CCTTC	2 cut(s)	298, 637
HpyCH4III	ACNGT	5 cut(s)	164, 339, 367, 706, 715
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	458, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 575
HpyF3I	CTNAG	2 cut(s)	201, 254
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	6 cut(s)	110, 252, 443, 563, 667, 697
Kzo9I	GATC	2 cut(s)	28, 500
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	3 cut(s)	229, 491, 666
MaeI	CTAG	3 cut(s)	53, 324, 579
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	143, 221, 736
MalI	GATC	2 cut(s)	30, 502
MboI	GATC	2 cut(s)	28, 500
MboII	GAAGA	6 cut(s)	56, 126, 245, 248, 412, 679
MflI	RGATCY	2 cut(s)	28, 500
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	1 cut(s)	552
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	6 cut(s)	100, 186, 211, 415, 464, 609
MseI	TTAA	2 cut(s)	315, 555
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	5 cut(s)	38, 100, 213, 494, 627
MspR9I	CCNGG	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	505
MwoI	GCNNNNNNNGC	2 cut(s)	569, 575
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	2 cut(s)	28, 500
NlaIII	CATG	6 cut(s)	110, 252, 443, 563, 667, 697
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	2 cut(s)	143, 736
NspI	RCATGY	1 cut(s)	110
OliI	CACNNNNGTG	1 cut(s)	77
PciI	ACATGT	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	125, 131
PflMI	CCANNNNNTGG	1 cut(s)	565
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	438, 571, 721
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PscI	ACATGT	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspPI	GGNCC	4 cut(s)	49, 82, 97, 606
PsuI	RGATCY	2 cut(s)	28, 500
RsaI	GTAC	2 cut(s)	88, 406
RsaNI	GTAC	2 cut(s)	87, 405
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	315, 555
SatI	GCNGC	3 cut(s)	437, 570, 720
Sau3AI	GATC	2 cut(s)	28, 500
Sau96I	GGNCC	4 cut(s)	49, 82, 97, 606
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	8 cut(s)	92, 122, 150, 296, 385, 601, 648, 748
SfaNI	GCATC	3 cut(s)	229, 491, 666
SinI	GGWCC	2 cut(s)	82, 97
SmiMI	CAYNNNNRTG	1 cut(s)	77
SpeI	ACTAGT	1 cut(s)	323
Sse9I	AATT	1 cut(s)	552
SsiI	CCGC	4 cut(s)	258, 347, 436, 720
SspMI	CTAG	3 cut(s)	53, 324, 579
StyD4I	CCNGG	1 cut(s)	503
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	5 cut(s)	164, 339, 367, 706, 715
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	731
TasI	AATT	1 cut(s)	552
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	2 cut(s)	439, 722
TfiI	GAWTC	2 cut(s)	125, 131
Tru1I	TTAA	2 cut(s)	315, 555
Tru9I	TTAA	2 cut(s)	315, 555
TscAI	CASTG	2 cut(s)	148, 729
TseFI	GTSAC	2 cut(s)	143, 736
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	143, 736
TspDTI	ATGAA	2 cut(s)	443, 680
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	148, 729
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	82, 97
XceI	RCATGY	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	633
XspI	CTAG	3 cut(s)	53, 324, 579
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.