Rmu_sc0006074.1_g000009

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006074.1
Physical Location & Seq
Forward (+)
46582 .. 48934
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006074.1_g000009.1.cds

Sequence Viewer

Length: 1500 bp
atgtccacttctgtcgccaccttcctcctgctagccatggctatggcttcttccatctcctgcctccgagatccgaacccgattcaactcgccctaaatggcgttcttcaagccaccaatgtggtccatacctctatggacctggcacatgggttggcaagctccgaatcggattctgctggccatgatgtggctctgatggactgtgaaagactatatgatgagagtgtgtcgaggctcaaagagatctcctgcgagggtaattataccggagaagatgctcggacatggctcagtggtgtgcttgccaaccattggagttgttgggatggcttggaggagaagggttttgttgagaataccagtggtgctcatcattatagtgcggtggcacaaaacttgaccatggtgcttggtgaagctcttgctttgcatggggagagtactatgactactgatgaggcaatgatagaagtaccacatggacataattccaaccccaagccaaatggagggcttttagcatcatggagtccagcaacatccagggctgactttgtggtggcaaaagatggttcaggcactcacacaacaattaaccaagccgtggttgcacttgctagaatgggtcacaggcgacctccaagagccataatctatgtaaaatccggcgtctacaatgacaaggtggagattggtggacatacgaagaatgtgatgcttgttggggatggcatggacagaactataatcactggtagccgcagtgtcgttgacggttacaccactttgacctcagccacatttggtgtctcaggggatggtttttgggcgagggacataacgtttgagaatacggccggtccacaaaagcaccaagcagtggcattgagggtcagctctgacctgtcagtgttttaccgatgcagcattagggggtaccaagacactctctacacccattccctaaggcaattctaccgtgactgtcacatatatggcacaatcgatttcatattcggtgacgcccccgtcgtgctacaaaattgcgacattcttgtgaggaggccaatggggcaccaatccaacatgatcactgcccaaggacgcgacaacctgggagagaacacgggcattgttattcaaggttgtcacgttagacctgcgagggagtttgagggggttaagggttcgtataggacttaccttggtcgaccgtggcagagatactcgaggactctgttcttgaagacagatttggatggtttggttgatccaaaggggtggacggaatggagaggtagttttgcactttcaacactgtattatggggagtatatgaatgtaggggtgggtgcctcaactgacaagagggttagatggcctggttttcatgtgcttagtagtccacatgaggtcagccctttcacagttagtcgtttcattcaaggagagtcatggattctaggcactggtgtgccagtttggcttggaatataa

Protein Analysis

499

Amino Acids

54.64

Weight (kDa)

6.16

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1031
Acc36I ACCTGC 1 cut(s) 1171
Acc65I GGTACC 1 cut(s) 939
AccB1I GGYRCC 3 cut(s) 939, 1077, 1355
AccB7I CCANNNNNTGG 4 cut(s) 190, 315, 607, 883
AccI GTMKAC 2 cut(s) 675, 1213
AccII CGCG 1 cut(s) 1110
AciI CCGC 2 cut(s) 386, 763
AclI AACGTT 1 cut(s) 845
AclWI GGATC 2 cut(s) 65, 1268
AcoI YGGCCR 2 cut(s) 181, 858
AcyI GRCGYC 2 cut(s) 672, 1026
AfaI GTAC 3 cut(s) 445, 477, 941
AfiI CCNNNNNNNGG 5 cut(s) 190, 315, 512, 607, 883
AgsI TTSAA 6 cut(s) 86, 110, 1145, 1249, 1317, 1448
AjnI CCWGG 4 cut(s) 141, 545, 1116, 1384
AjuI GAANNNNNNNTTGG 2 cut(s) 1241, 1273
AleI CACNNNNGTG 2 cut(s) 119, 1475
AluBI AGCT 3 cut(s) 162, 422, 900
AluI AGCT 3 cut(s) 162, 422, 900
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 1 cut(s) 817
AlwI GGATC 2 cut(s) 65, 1268
Ama87I CYCGRG 1 cut(s) 1231
AoxI GGCC 4 cut(s) 181, 858, 1067, 1382
ApeKI GCWGC 1 cut(s) 927
ArsI GACNNNNNNTTYG 2 cut(s) 830, 862
Asp718I GGTACC 1 cut(s) 939
AspS9I GGNCC 3 cut(s) 124, 139, 863
AsuHPI GGTGA 2 cut(s) 428, 1034
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 1231
AvaII GGWCC 3 cut(s) 124, 139, 863
AxyI CCTNAGG 1 cut(s) 968
BaeGI GKGCMC 1 cut(s) 1080
BalI TGGCCA 1 cut(s) 183
BanI GGYRCC 3 cut(s) 939, 1077, 1355
BbsI GAAGAC 1 cut(s) 1256
Bbv12I GWGCWC 1 cut(s) 373
BbvCI CCTCAGC 1 cut(s) 796
BbvI GCAGC 1 cut(s) 939
BccI CCATC 8 cut(s) 62, 193, 323, 566, 725, 815, 1256, 1374
BceAI ACGGC 2 cut(s) 590, 873
BciT130I CCWGG 4 cut(s) 143, 547, 1118, 1386
BclI TGATCA 1 cut(s) 1092
BcoDI GTCTC 1 cut(s) 817
BfaI CTAG 3 cut(s) 32, 621, 1466
BfuAI ACCTGC 1 cut(s) 1171
BglI GCCNNNNNGGC 2 cut(s) 1075, 1486
BglII AGATCT 1 cut(s) 246
BisI GCNGC 2 cut(s) 763, 928
BlsI GCNGC 2 cut(s) 764, 929
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 4 cut(s) 143, 547, 1118, 1386
Bme18I GGWCC 3 cut(s) 124, 139, 863
BmeT110I CYCGRG 1 cut(s) 1231
BmgT120I GGNCC 3 cut(s) 124, 139, 863
BmiI GGNNCC 3 cut(s) 941, 1079, 1357
BmrFI CCNGG 4 cut(s) 143, 547, 1118, 1386
BmsI GCATC 4 cut(s) 268, 533, 708, 914
BmtI GCTAGC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 1256
Bpu10I CCTNAGC 1 cut(s) 796
Bsa29I ATCGAT 1 cut(s) 1008
BsaHI GRCGYC 2 cut(s) 672, 1026
BsaJI CCNNGG 8 cut(s) 36, 405, 546, 606, 1102, 1117, 1207, 1217
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 1288, 1318
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 315, 512, 607, 883
Bse118I RCCGGY 1 cut(s) 860
Bse1I ACTGG 4 cut(s) 363, 760, 1477, 1481
Bse21I CCTNAGG 1 cut(s) 968
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 4 cut(s) 143, 547, 1118, 1386
BseCI ATCGAT 1 cut(s) 1008
BseDI CCNNGG 8 cut(s) 36, 405, 546, 606, 1102, 1117, 1207, 1217
BseGI GGATG 5 cut(s) 334, 542, 736, 826, 1267
BseLI CCNNNNNNNGG 5 cut(s) 190, 315, 512, 607, 883
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 3 cut(s) 307, 810, 828
BseNI ACTGG 4 cut(s) 363, 760, 1477, 1481
BseRI GAGGAG 2 cut(s) 353, 1078
BseSI GKGCMC 1 cut(s) 1080
BseX3I CGGCCG 1 cut(s) 858
BseXI GCAGC 1 cut(s) 939
Bsh1236I CGCG 1 cut(s) 1110
Bsh1285I CGRYCG 2 cut(s) 861, 1217
BshFI GGCC 4 cut(s) 183, 860, 1069, 1384
BshNI GGYRCC 3 cut(s) 939, 1077, 1355
BshVI ATCGAT 1 cut(s) 1008
BsiEI CGRYCG 2 cut(s) 861, 1217
BsiHKAI GWGCWC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 1231
BsiSI CCGG 3 cut(s) 270, 669, 861
BslFI GGGAC 1 cut(s) 851
BslI CCNNNNNNNGG 5 cut(s) 190, 315, 512, 607, 883
BsmAI GTCTC 1 cut(s) 817
BsmFI GGGAC 1 cut(s) 851
BsnI GGCC 4 cut(s) 183, 860, 1069, 1384
BsoBI CYCGRG 1 cut(s) 1231
Bsp1286I GDGCHC 2 cut(s) 373, 1080
Bsp143I GATC 4 cut(s) 70, 246, 1092, 1273
Bsp19I CCATGG 2 cut(s) 36, 405
BspACI CCGC 2 cut(s) 386, 763
BspANI GGCC 4 cut(s) 183, 860, 1069, 1384
BspCNI CTCAG 3 cut(s) 306, 809, 827
BspDI ATCGAT 1 cut(s) 1008
BspFNI CGCG 1 cut(s) 1110
BspLI GGNNCC 3 cut(s) 941, 1079, 1357
BspMI ACCTGC 1 cut(s) 1171
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 2 cut(s) 65, 1268
BspT107I GGYRCC 3 cut(s) 939, 1077, 1355
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 860
BsrI ACTGG 4 cut(s) 363, 760, 1477, 1481
BssAI RCCGGY 1 cut(s) 860
BssECI CCNNGG 8 cut(s) 36, 405, 546, 606, 1102, 1117, 1207, 1217
BssMI GATC 4 cut(s) 70, 246, 1092, 1273
BssNI GRCGYC 2 cut(s) 672, 1026
BssT1I CCWWGG 4 cut(s) 36, 405, 1102, 1207
Bst2UI CCWGG 4 cut(s) 143, 547, 1118, 1386
Bst4CI ACNGT 7 cut(s) 206, 779, 983, 989, 1218, 1323, 1432
BstACI GRCGYC 2 cut(s) 672, 1026
BstC8I GCNNGC 4 cut(s) 33, 160, 181, 306
BstDEI CTNAG 5 cut(s) 293, 796, 814, 968, 1400
BstDSI CCRYGG 4 cut(s) 36, 405, 606, 1217
BstF5I GGATG 5 cut(s) 334, 542, 736, 826, 1267
BstFNI CGCG 1 cut(s) 1110
BstKTI GATC 4 cut(s) 73, 249, 1095, 1276
BstMAI GTCTC 1 cut(s) 817
BstMBI GATC 4 cut(s) 70, 246, 1092, 1273
BstMCI CGRYCG 2 cut(s) 861, 1217
BstMWI GCNNNNNNNGC 3 cut(s) 611, 1075, 1486
BstNI CCWGG 4 cut(s) 143, 547, 1118, 1386
BstSCI CCNGG 4 cut(s) 141, 545, 1116, 1384
BstSLI GKGCMC 1 cut(s) 1080
BstUI CGCG 1 cut(s) 1110
BstV1I GCAGC 1 cut(s) 939
BstV2I GAAGAC 1 cut(s) 1256
BstX2I RGATCY 2 cut(s) 70, 246
BstXI CCANNNNNNTGG 3 cut(s) 43, 121, 1284
BstYI RGATCY 2 cut(s) 70, 246
BstZI CGGCCG 1 cut(s) 858
Bsu15I ATCGAT 1 cut(s) 1008
Bsu36I CCTNAGG 1 cut(s) 968
BsuRI GGCC 4 cut(s) 183, 860, 1069, 1384
BsuTUI ATCGAT 1 cut(s) 1008
BtgI CCRYGG 4 cut(s) 36, 405, 606, 1217
BtsCI GGATG 5 cut(s) 334, 542, 736, 826, 1267
BtsI GCAGTG 3 cut(s) 772, 888, 1095
BtsIMutI CAGTG 9 cut(s) 301, 370, 753, 772, 888, 918, 1095, 1319, 1470
BveI ACCTGC 1 cut(s) 1171
Cac8I GCNNGC 4 cut(s) 33, 160, 181, 306
Cfr10I RCCGGY 1 cut(s) 860
Cfr13I GGNCC 3 cut(s) 124, 139, 863
ClaI ATCGAT 1 cut(s) 1008
CseI GACGC 3 cut(s) 661, 1034, 1116
Csp6I GTAC 3 cut(s) 444, 476, 940
CviQI GTAC 3 cut(s) 444, 476, 940
DdeI CTNAG 5 cut(s) 293, 796, 814, 968, 1400
DpnI GATC 4 cut(s) 72, 248, 1094, 1275
DpnII GATC 4 cut(s) 70, 246, 1092, 1273
DrdI GACNNNNNNGTC 1 cut(s) 1031
DseDI GACNNNNNNGTC 1 cut(s) 1031
EaeI YGGCCR 2 cut(s) 181, 858
EagI CGGCCG 1 cut(s) 858
EclXI CGGCCG 1 cut(s) 858
Eco130I CCWWGG 4 cut(s) 36, 405, 1102, 1207
Eco47I GGWCC 3 cut(s) 124, 139, 863
Eco52I CGGCCG 1 cut(s) 858
Eco81I CCTNAGG 1 cut(s) 968
Eco88I CYCGRG 1 cut(s) 1231
EcoRII CCWGG 4 cut(s) 141, 545, 1116, 1384
EcoT14I CCWWGG 4 cut(s) 36, 405, 1102, 1207
ErhI CCWWGG 4 cut(s) 36, 405, 1102, 1207
FaqI GGGAC 1 cut(s) 851
FbaI TGATCA 1 cut(s) 1092
FblI GTMKAC 2 cut(s) 675, 1213
Fnu4HI GCNGC 2 cut(s) 763, 928
FokI GGATG 5 cut(s) 341, 529, 743, 833, 1274
Fsp4HI GCNGC 2 cut(s) 763, 928
FspBI CTAG 3 cut(s) 32, 621, 1466
GluI GCNGC 2 cut(s) 763, 928
HaeIII GGCC 4 cut(s) 183, 860, 1069, 1384
HapII CCGG 3 cut(s) 270, 669, 861
HgaI GACGC 3 cut(s) 661, 1034, 1116
Hin1I GRCGYC 2 cut(s) 672, 1026
HincII GTYRAC 2 cut(s) 775, 1214
HindII GTYRAC 2 cut(s) 775, 1214
HinfI GANTC 7 cut(s) 82, 167, 173, 532, 1237, 1454, 1462
HpaII CCGG 3 cut(s) 270, 669, 861
HphI GGTGA 2 cut(s) 428, 1034
Hpy166II GTNNAC 8 cut(s) 6, 676, 701, 775, 866, 1214, 1287, 1409
Hpy188I TCNGA 7 cut(s) 68, 75, 166, 172, 198, 285, 904
Hpy188III TCNNGA 1 cut(s) 1246
Hpy8I GTNNAC 8 cut(s) 6, 676, 701, 775, 866, 1214, 1287, 1409
Hpy99I CGWCG 1 cut(s) 1037
HpyAV CCTTC 2 cut(s) 31, 337
HpyCH4III ACNGT 7 cut(s) 206, 779, 983, 989, 1218, 1323, 1432
HpyCH4IV ACGT 2 cut(s) 845, 1155
HpyCH4V TGCA 4 cut(s) 433, 614, 927, 1310
HpyF10VI GCNNNNNNNGC 3 cut(s) 611, 1075, 1486
HpyF3I CTNAG 5 cut(s) 293, 796, 814, 968, 1400
HpySE526I ACGT 2 cut(s) 845, 1155
Hsp92I GRCGYC 2 cut(s) 672, 1026
KpnI GGTACC 1 cut(s) 943
Ksp22I TGATCA 1 cut(s) 1092
Kzo9I GATC 4 cut(s) 70, 246, 1092, 1273
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 1 cut(s) 939
LweI GCATC 4 cut(s) 268, 533, 708, 914
MaeI CTAG 3 cut(s) 32, 621, 1466
MaeII ACGT 2 cut(s) 845, 1155
MaeIII GTNAC 6 cut(s) 629, 779, 983, 989, 1022, 1151
MalI GATC 4 cut(s) 72, 248, 1094, 1275
MboI GATC 4 cut(s) 70, 246, 1092, 1273
MboII GAAGA 5 cut(s) 42, 98, 287, 721, 1261
MflI RGATCY 2 cut(s) 70, 246
MhlI GDGCHC 2 cut(s) 373, 1080
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 5 cut(s) 262, 490, 594, 974, 1045
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 3 cut(s) 541, 1231, 1463
MmeI TCCRAC 2 cut(s) 519, 1110
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 2 cut(s) 597, 1185
MslI CAYNNNNRTG 6 cut(s) 41, 119, 381, 996, 1058, 1475
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 3 cut(s) 270, 669, 861
MspR9I CCNGG 4 cut(s) 143, 547, 1118, 1386
MvaI CCWGG 4 cut(s) 143, 547, 1118, 1386
MvnI CGCG 1 cut(s) 1110
MwoI GCNNNNNNNGC 3 cut(s) 611, 1075, 1486
NcoI CCATGG 2 cut(s) 36, 405
NdeII GATC 4 cut(s) 70, 246, 1092, 1273
NheI GCTAGC 1 cut(s) 31
NlaIV GGNNCC 3 cut(s) 941, 1079, 1357
NmuCI GTSAC 5 cut(s) 629, 983, 989, 1022, 1151
OliI CACNNNNGTG 2 cut(s) 119, 1475
PaeR7I CTCGAG 1 cut(s) 1231
PcsI WCGNNNNNNNCGW 1 cut(s) 1032
PfeI GAWTC 4 cut(s) 82, 167, 173, 1462
PflMI CCANNNNNTGG 4 cut(s) 190, 315, 607, 883
PkrI GCNGC 2 cut(s) 764, 929
PleI GAGTC 3 cut(s) 540, 1231, 1462
PpsI GAGTC 3 cut(s) 540, 1231, 1462
Psp1406I AACGTT 1 cut(s) 845
Psp6I CCWGG 4 cut(s) 141, 545, 1116, 1384
PspGI CCWGG 4 cut(s) 141, 545, 1116, 1384
PspN4I GGNNCC 3 cut(s) 941, 1079, 1357
PspPI GGNCC 3 cut(s) 124, 139, 863
PspXI VCTCGAGB 1 cut(s) 1231
PsuI RGATCY 2 cut(s) 70, 246
RsaI GTAC 3 cut(s) 445, 477, 941
RsaNI GTAC 3 cut(s) 444, 476, 940
RseI CAYNNNNRTG 6 cut(s) 41, 119, 381, 996, 1058, 1475
SalI GTCGAC 1 cut(s) 1212
SaqAI TTAA 2 cut(s) 597, 1185
SatI GCNGC 2 cut(s) 763, 928
Sau3AI GATC 4 cut(s) 70, 246, 1092, 1273
Sau96I GGNCC 3 cut(s) 124, 139, 863
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 3 cut(s) 541, 1231, 1463
ScrFI CCNGG 4 cut(s) 143, 547, 1118, 1386
SduI GDGCHC 2 cut(s) 373, 1080
SfaNI GCATC 4 cut(s) 268, 533, 708, 914
Sfr274I CTCGAG 1 cut(s) 1231
SinI GGWCC 3 cut(s) 124, 139, 863
SlaI CTCGAG 1 cut(s) 1231
SmiMI CAYNNNNRTG 6 cut(s) 41, 119, 381, 996, 1058, 1475
SmlI CTYRAG 1 cut(s) 1231
SmoI CTYRAG 1 cut(s) 1231
Sse9I AATT 5 cut(s) 262, 490, 594, 974, 1045
SsiI CCGC 2 cut(s) 386, 763
SspMI CTAG 3 cut(s) 32, 621, 1466
StyD4I CCNGG 4 cut(s) 141, 545, 1116, 1384
StyI CCWWGG 4 cut(s) 36, 405, 1102, 1207
TaaI ACNGT 7 cut(s) 206, 779, 983, 989, 1218, 1323, 1432
TaiI ACGT 2 cut(s) 848, 1158
TaqI TCGA 4 cut(s) 233, 1008, 1213, 1232
TasI AATT 5 cut(s) 262, 490, 594, 974, 1045
TatI WGTACW 1 cut(s) 443
TauI GCSGC 1 cut(s) 765
TfiI GAWTC 4 cut(s) 82, 167, 173, 1462
Tru1I TTAA 2 cut(s) 597, 1185
Tru9I TTAA 2 cut(s) 597, 1185
TscAI CASTG 9 cut(s) 301, 370, 760, 772, 888, 918, 1102, 1326, 1477
TseFI GTSAC 5 cut(s) 629, 983, 989, 1022, 1151
TseI GCWGC 1 cut(s) 927
Tsp45I GTSAC 5 cut(s) 629, 983, 989, 1022, 1151
TspDTI ATGAA 4 cut(s) 1003, 1355, 1382, 1432
TspGWI ACGGA 1 cut(s) 1304
TspRI CASTG 9 cut(s) 301, 370, 760, 772, 888, 918, 1102, 1326, 1477
Van91I CCANNNNNTGG 4 cut(s) 190, 315, 607, 883
VpaK11BI GGWCC 3 cut(s) 124, 139, 863
XhoI CTCGAG 1 cut(s) 1231
XmiI GTMKAC 2 cut(s) 675, 1213
XspI CTAG 3 cut(s) 32, 621, 1466
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.