Rw1G018850

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
41394939 .. 41397277
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018850.1

Sequence Viewer

Length: 1353 bp
ATGTCCACTTCTGTCACCACCTTCCTCCTGCTAGCCATGGCTATGGCTTCTTCCATCTCTTGCCTCCGAGATCCGAACCCGGTTCAGCTCGCCCTAAATGGCGTTCTTCAAGCCACCAATGTGGTCCGTACCTCTATGGACCTGGTACATGGGTTGGCAAGCTCCGAATCGGATTCTGCTGGCCATGATGTGGCTCTGATGGACTGTGAAAGACTATATGATGAGAGTGTGCCGAGGCTCAAAGAGATCTCCTGCGAGGGTAATTATACCGGAGAAGATGCTCGGACATGGCTCAGTGGTGTGCTTGCCAACCATAGGAGTTGTTGGGATGGCTTGGAGGAGAAGGGTTTTGTTGAGAATACCAGTGGTGCTCATCATTATAGTGCGGTGGCACAAAACGTGCTTGGTGAAGCTCTTGCTTTGCATGGGGAGAGTACTATGACTACTGATGAGGCAATGATACCACATGGACACAATTCCAACCCCAAGCCAAATGGAGGGCTTTTAGCATCATGGAGTCCAGCAACATCCAGGGCTGACTTTGTGGTGGCAAAAGATGGTTCAGGCACTCACACAACAATTAACCAAGCCGTGGTTGCACTTGCTAGAATGGGTCACAGGCGACCTCCAAGAGCCATAATCTATGTGAAATCCGGCGTCTACAATGACAAGGTGGAGATTGGTGGACATACGAAGAATGTGATGCTTGTTGGGGATGGCATGGACAGAACTATAATCACTGGTAGCCGCAGTGTCGTTGACGGTTACACCACTTTGACCTCAGCCACATTTGGTGTCTCAGGGGATGGTTTTTGGGCGAGGGACATAACGTTTGAGAATACGGCCGTGTTTTACCGATGCAGCATTAAGGGGTACCAAGACACTCTCTACGCCCATTCCCTAAGGCAATTCTACCGTGACTGTCACATATATGGCACAATCGATTTCATATTCGGTGACGCCGCCGTAGTGCTACAAAATTGCGACATTCTTGTGAGGAGGCCAATGGGGCACCAATCCAACATGATCACTGCCCAAGGACGCGACAACCTGGGAGAGAACACGGGCATTGTTATTCAAGGTTGTCACGTTAGACCTGCGAGGGAGTTTGAGGGGGTTAAGGGTTCGTATAGGACTTACCTTGGTCGGCCGTGGCAGAGATACTCGAGGACTCTGTTCTTGAAGACAGATTTGGATGGTTTGGTTGATCCAAAGGGGTGGACGGAATGGAGAGGTAGTTTTTCACTTTCAACACTTAGTCCACAGGAGTTCAGCCCTTTCACAGTTAGTCGTTTCATTCAAGGAGAGTCATGGATTCTAGGCACTGGTGTGCCAGTTTGGCTTGGAATATAA

Protein Analysis

450

Amino Acids

49.23

Weight (kDa)

6.1

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 24 - 133 1.3e-12 Plant invertase/pectin methylesterase inhibitor
Pectinesterase PF01095 180 - 425 2.9e-95 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1105
Acc65I GGTACC 1 cut(s) 873
AccB1I GGYRCC 2 cut(s) 873, 1011
AccB7I CCANNNNNTGG 2 cut(s) 190, 592
AccI GTMKAC 1 cut(s) 660
AccII CGCG 1 cut(s) 1044
AciI CCGC 3 cut(s) 386, 748, 963
AclI AACGTT 1 cut(s) 830
AclWI GGATC 2 cut(s) 65, 1202
AcoI YGGCCR 3 cut(s) 181, 843, 1148
AcyI GRCGYC 2 cut(s) 657, 960
AfaI GTAC 4 cut(s) 130, 147, 436, 875
AfiI CCNNNNNNNGG 4 cut(s) 190, 315, 497, 592
AgsI TTSAA 5 cut(s) 110, 1079, 1183, 1251, 1301
AjnI CCWGG 3 cut(s) 141, 530, 1050
AjuI GAANNNNNNNTTGG 2 cut(s) 1175, 1207
AleI CACNNNNGTG 2 cut(s) 119, 1328
AluBI AGCT 3 cut(s) 88, 162, 413
AluI AGCT 3 cut(s) 88, 162, 413
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 1 cut(s) 802
AlwI GGATC 2 cut(s) 65, 1202
Ama87I CYCGRG 1 cut(s) 1165
AoxI GGCC 4 cut(s) 181, 843, 1001, 1148
ApeKI GCWGC 1 cut(s) 861
ArsI GACNNNNNNTTYG 2 cut(s) 815, 847
Asp718I GGTACC 1 cut(s) 873
AspS9I GGNCC 2 cut(s) 124, 139
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 7, 419, 968
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 1165
AvaII GGWCC 2 cut(s) 124, 139
AxyI CCTNAGG 1 cut(s) 902
BaeGI GKGCMC 1 cut(s) 1014
BaeI ACNNNNGTAYC 2 cut(s) 137, 170
BalI TGGCCA 1 cut(s) 183
BanI GGYRCC 2 cut(s) 873, 1011
BbsI GAAGAC 1 cut(s) 1190
Bbv12I GWGCWC 1 cut(s) 373
BbvCI CCTCAGC 1 cut(s) 781
BbvI GCAGC 1 cut(s) 873
BccI CCATC 7 cut(s) 62, 193, 323, 551, 710, 800, 1190
BceAI ACGGC 5 cut(s) 575, 830, 858, 950, 1135
BciT130I CCWGG 3 cut(s) 143, 532, 1052
BclI TGATCA 1 cut(s) 1026
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 802
BfaI CTAG 3 cut(s) 32, 606, 1319
BfuAI ACCTGC 1 cut(s) 1105
BglI GCCNNNNNGGC 2 cut(s) 1009, 1339
BglII AGATCT 1 cut(s) 246
BisI GCNGC 3 cut(s) 748, 862, 963
BlsI GCNGC 3 cut(s) 749, 863, 964
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 4 cut(s) 80, 143, 532, 1052
Bme18I GGWCC 2 cut(s) 124, 139
BmeT110I CYCGRG 1 cut(s) 1165
BmgT120I GGNCC 2 cut(s) 124, 139
BmiI GGNNCC 2 cut(s) 875, 1013
BmrFI CCNGG 4 cut(s) 80, 143, 532, 1052
BmsI GCATC 4 cut(s) 268, 518, 693, 848
BmtI GCTAGC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 1190
Bpu10I CCTNAGC 1 cut(s) 781
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 942
BsaHI GRCGYC 2 cut(s) 657, 960
BsaJI CCNNGG 8 cut(s) 36, 233, 531, 591, 1036, 1051, 1141, 1151
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 1222, 1252
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 315, 497, 592
Bse1I ACTGG 4 cut(s) 363, 745, 1330, 1334
Bse21I CCTNAGG 1 cut(s) 902
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 3 cut(s) 143, 532, 1052
BseCI ATCGAT 1 cut(s) 942
BseDI CCNNGG 8 cut(s) 36, 233, 531, 591, 1036, 1051, 1141, 1151
BseGI GGATG 5 cut(s) 334, 527, 721, 811, 1201
BseLI CCNNNNNNNGG 4 cut(s) 190, 315, 497, 592
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 3 cut(s) 307, 795, 813
BseNI ACTGG 4 cut(s) 363, 745, 1330, 1334
BseRI GAGGAG 2 cut(s) 353, 1012
BseSI GKGCMC 1 cut(s) 1014
BseX3I CGGCCG 2 cut(s) 843, 1148
BseXI GCAGC 1 cut(s) 873
Bsh1236I CGCG 1 cut(s) 1044
Bsh1285I CGRYCG 2 cut(s) 846, 1151
BshFI GGCC 4 cut(s) 183, 845, 1003, 1150
BshNI GGYRCC 2 cut(s) 873, 1011
BshVI ATCGAT 1 cut(s) 942
BsiEI CGRYCG 2 cut(s) 846, 1151
BsiHKAI GWGCWC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 1165
BsiSI CCGG 3 cut(s) 80, 270, 654
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 4 cut(s) 190, 315, 497, 592
BsmAI GTCTC 1 cut(s) 802
BsmFI GGGAC 1 cut(s) 836
BsnI GGCC 4 cut(s) 183, 845, 1003, 1150
BsoBI CYCGRG 1 cut(s) 1165
Bsp1286I GDGCHC 2 cut(s) 373, 1014
Bsp143I GATC 4 cut(s) 70, 246, 1026, 1207
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 3 cut(s) 386, 748, 963
BspANI GGCC 4 cut(s) 183, 845, 1003, 1150
BspCNI CTCAG 3 cut(s) 306, 794, 812
BspDI ATCGAT 1 cut(s) 942
BspFNI CGCG 1 cut(s) 1044
BspLI GGNNCC 2 cut(s) 875, 1013
BspMI ACCTGC 1 cut(s) 1105
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 2 cut(s) 65, 1202
BspT107I GGYRCC 2 cut(s) 873, 1011
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 4 cut(s) 363, 745, 1330, 1334
BssECI CCNNGG 8 cut(s) 36, 233, 531, 591, 1036, 1051, 1141, 1151
BssMI GATC 4 cut(s) 70, 246, 1026, 1207
BssNI GRCGYC 2 cut(s) 657, 960
BssT1I CCWWGG 3 cut(s) 36, 1036, 1141
Bst2UI CCWGG 3 cut(s) 143, 532, 1052
Bst4CI ACNGT 5 cut(s) 206, 764, 917, 923, 1285
BstACI GRCGYC 2 cut(s) 657, 960
BstC8I GCNNGC 5 cut(s) 33, 90, 160, 181, 306
BstDEI CTNAG 5 cut(s) 293, 781, 799, 902, 1256
BstDSI CCRYGG 3 cut(s) 36, 591, 1151
BstF5I GGATG 5 cut(s) 334, 527, 721, 811, 1201
BstFNI CGCG 1 cut(s) 1044
BstKTI GATC 4 cut(s) 73, 249, 1029, 1210
BstMAI GTCTC 1 cut(s) 802
BstMBI GATC 4 cut(s) 70, 246, 1026, 1207
BstMCI CGRYCG 2 cut(s) 846, 1151
BstMWI GCNNNNNNNGC 3 cut(s) 596, 1009, 1339
BstNI CCWGG 3 cut(s) 143, 532, 1052
BstSCI CCNGG 4 cut(s) 78, 141, 530, 1050
BstSLI GKGCMC 1 cut(s) 1014
BstUI CGCG 1 cut(s) 1044
BstV1I GCAGC 1 cut(s) 873
BstV2I GAAGAC 1 cut(s) 1190
BstX2I RGATCY 2 cut(s) 70, 246
BstXI CCANNNNNNTGG 3 cut(s) 43, 121, 1218
BstYI RGATCY 2 cut(s) 70, 246
BstZI CGGCCG 2 cut(s) 843, 1148
Bsu15I ATCGAT 1 cut(s) 942
Bsu36I CCTNAGG 1 cut(s) 902
BsuRI GGCC 4 cut(s) 183, 845, 1003, 1150
BsuTUI ATCGAT 1 cut(s) 942
BtgI CCRYGG 3 cut(s) 36, 591, 1151
BtsCI GGATG 5 cut(s) 334, 527, 721, 811, 1201
BtsI GCAGTG 2 cut(s) 757, 1029
BtsIMutI CAGTG 6 cut(s) 301, 370, 738, 757, 1029, 1323
BveI ACCTGC 1 cut(s) 1105
Cac8I GCNNGC 5 cut(s) 33, 90, 160, 181, 306
Cfr13I GGNCC 2 cut(s) 124, 139
ClaI ATCGAT 1 cut(s) 942
CseI GACGC 3 cut(s) 646, 968, 1050
CsiI ACCWGGT 1 cut(s) 141
Csp6I GTAC 4 cut(s) 129, 146, 435, 874
CviQI GTAC 4 cut(s) 129, 146, 435, 874
DdeI CTNAG 5 cut(s) 293, 781, 799, 902, 1256
DpnI GATC 4 cut(s) 72, 248, 1028, 1209
DpnII GATC 4 cut(s) 70, 246, 1026, 1207
EaeI YGGCCR 3 cut(s) 181, 843, 1148
EagI CGGCCG 2 cut(s) 843, 1148
EclXI CGGCCG 2 cut(s) 843, 1148
Eco130I CCWWGG 3 cut(s) 36, 1036, 1141
Eco47I GGWCC 2 cut(s) 124, 139
Eco52I CGGCCG 2 cut(s) 843, 1148
Eco81I CCTNAGG 1 cut(s) 902
Eco88I CYCGRG 1 cut(s) 1165
EcoRII CCWGG 3 cut(s) 141, 530, 1050
EcoT14I CCWWGG 3 cut(s) 36, 1036, 1141
ErhI CCWWGG 3 cut(s) 36, 1036, 1141
FaqI GGGAC 1 cut(s) 836
FbaI TGATCA 1 cut(s) 1026
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 3 cut(s) 748, 862, 963
FokI GGATG 5 cut(s) 341, 514, 728, 818, 1208
Fsp4HI GCNGC 3 cut(s) 748, 862, 963
FspBI CTAG 3 cut(s) 32, 606, 1319
GluI GCNGC 3 cut(s) 748, 862, 963
HaeIII GGCC 4 cut(s) 183, 845, 1003, 1150
HapII CCGG 3 cut(s) 80, 270, 654
HgaI GACGC 3 cut(s) 646, 968, 1050
Hin1I GRCGYC 2 cut(s) 657, 960
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HinfI GANTC 6 cut(s) 167, 173, 517, 1171, 1307, 1315
HpaII CCGG 3 cut(s) 80, 270, 654
HphI GGTGA 3 cut(s) 7, 419, 968
Hpy166II GTNNAC 6 cut(s) 6, 661, 686, 760, 1221, 1262
Hpy188I TCNGA 6 cut(s) 68, 75, 166, 172, 198, 285
Hpy188III TCNNGA 1 cut(s) 1180
Hpy8I GTNNAC 6 cut(s) 6, 661, 686, 760, 1221, 1262
HpyAV CCTTC 2 cut(s) 31, 337
HpyCH4III ACNGT 5 cut(s) 206, 764, 917, 923, 1285
HpyCH4IV ACGT 3 cut(s) 399, 830, 1089
HpyCH4V TGCA 3 cut(s) 424, 599, 861
HpyF10VI GCNNNNNNNGC 3 cut(s) 596, 1009, 1339
HpyF3I CTNAG 5 cut(s) 293, 781, 799, 902, 1256
HpySE526I ACGT 3 cut(s) 399, 830, 1089
Hsp92I GRCGYC 2 cut(s) 657, 960
KpnI GGTACC 1 cut(s) 877
Ksp22I TGATCA 1 cut(s) 1026
Kzo9I GATC 4 cut(s) 70, 246, 1026, 1207
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 1 cut(s) 873
LweI GCATC 4 cut(s) 268, 518, 693, 848
MabI ACCWGGT 1 cut(s) 141
MaeI CTAG 3 cut(s) 32, 606, 1319
MaeII ACGT 3 cut(s) 399, 830, 1089
MaeIII GTNAC 7 cut(s) 13, 614, 764, 917, 923, 956, 1085
MalI GATC 4 cut(s) 72, 248, 1028, 1209
MboI GATC 4 cut(s) 70, 246, 1026, 1207
MboII GAAGA 5 cut(s) 42, 98, 287, 706, 1195
MflI RGATCY 2 cut(s) 70, 246
MhlI GDGCHC 2 cut(s) 373, 1014
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 5 cut(s) 262, 475, 579, 908, 979
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 3 cut(s) 526, 1165, 1316
MmeI TCCRAC 2 cut(s) 504, 1044
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 3 cut(s) 582, 867, 1119
MslI CAYNNNNRTG 6 cut(s) 41, 119, 381, 930, 992, 1328
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 3 cut(s) 80, 270, 654
MspR9I CCNGG 4 cut(s) 80, 143, 532, 1052
MvaI CCWGG 3 cut(s) 143, 532, 1052
MvnI CGCG 1 cut(s) 1044
MwoI GCNNNNNNNGC 3 cut(s) 596, 1009, 1339
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 36
NdeII GATC 4 cut(s) 70, 246, 1026, 1207
NheI GCTAGC 1 cut(s) 31
NlaIV GGNNCC 2 cut(s) 875, 1013
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 6 cut(s) 13, 614, 917, 923, 956, 1085
OliI CACNNNNGTG 2 cut(s) 119, 1328
PaeR7I CTCGAG 1 cut(s) 1165
PfeI GAWTC 3 cut(s) 167, 173, 1315
PflMI CCANNNNNTGG 2 cut(s) 190, 592
PkrI GCNGC 3 cut(s) 749, 863, 964
PleI GAGTC 3 cut(s) 525, 1165, 1315
PpsI GAGTC 3 cut(s) 525, 1165, 1315
Psp1406I AACGTT 1 cut(s) 830
Psp6I CCWGG 3 cut(s) 141, 530, 1050
PspGI CCWGG 3 cut(s) 141, 530, 1050
PspN4I GGNNCC 2 cut(s) 875, 1013
PspPI GGNCC 2 cut(s) 124, 139
PspXI VCTCGAGB 1 cut(s) 1165
PsuI RGATCY 2 cut(s) 70, 246
RsaI GTAC 4 cut(s) 130, 147, 436, 875
RsaNI GTAC 4 cut(s) 129, 146, 435, 874
RseI CAYNNNNRTG 6 cut(s) 41, 119, 381, 930, 992, 1328
SaqAI TTAA 3 cut(s) 582, 867, 1119
SatI GCNGC 3 cut(s) 748, 862, 963
Sau3AI GATC 4 cut(s) 70, 246, 1026, 1207
Sau96I GGNCC 2 cut(s) 124, 139
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 3 cut(s) 526, 1165, 1316
ScrFI CCNGG 4 cut(s) 80, 143, 532, 1052
SduI GDGCHC 2 cut(s) 373, 1014
SexAI ACCWGGT 1 cut(s) 141
SfaNI GCATC 4 cut(s) 268, 518, 693, 848
Sfr274I CTCGAG 1 cut(s) 1165
SinI GGWCC 2 cut(s) 124, 139
SlaI CTCGAG 1 cut(s) 1165
SmiMI CAYNNNNRTG 6 cut(s) 41, 119, 381, 930, 992, 1328
SmlI CTYRAG 1 cut(s) 1165
SmoI CTYRAG 1 cut(s) 1165
Sse9I AATT 5 cut(s) 262, 475, 579, 908, 979
SsiI CCGC 3 cut(s) 386, 748, 963
SspMI CTAG 3 cut(s) 32, 606, 1319
StyD4I CCNGG 4 cut(s) 78, 141, 530, 1050
StyI CCWWGG 3 cut(s) 36, 1036, 1141
TaaI ACNGT 5 cut(s) 206, 764, 917, 923, 1285
TaiI ACGT 3 cut(s) 402, 833, 1092
TaqI TCGA 2 cut(s) 942, 1166
TasI AATT 5 cut(s) 262, 475, 579, 908, 979
TatI WGTACW 1 cut(s) 434
TauI GCSGC 2 cut(s) 750, 965
TfiI GAWTC 3 cut(s) 167, 173, 1315
Tru1I TTAA 3 cut(s) 582, 867, 1119
Tru9I TTAA 3 cut(s) 582, 867, 1119
TscAI CASTG 6 cut(s) 301, 370, 745, 757, 1036, 1330
TseFI GTSAC 6 cut(s) 13, 614, 917, 923, 956, 1085
TseI GCWGC 1 cut(s) 861
Tsp45I GTSAC 6 cut(s) 13, 614, 917, 923, 956, 1085
TspDTI ATGAA 2 cut(s) 937, 1285
TspGWI ACGGA 2 cut(s) 116, 1238
TspRI CASTG 6 cut(s) 301, 370, 745, 757, 1036, 1330
Van91I CCANNNNNTGG 2 cut(s) 190, 592
VpaK11BI GGWCC 2 cut(s) 124, 139
XhoI CTCGAG 1 cut(s) 1165
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 3 cut(s) 32, 606, 1319
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.