Pectinesterase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G60730 |
| fragaria_vesca | FvH4_7g11333 FvH4_7g11340 FvH4_7g11360 |
| malus_domestica | MD07G1118200.v1.1 |
| prunus_persica | Prupe.2G141200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0349551 RchiOBHm_Chr1g0349581 |
| rosa_laevigata | RLG00000028540 RLG00000028543 |
| rosa_multiflora | Rmu_sc0002495.1_g000023 Rmu_sc0006074.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00305450 |
| rosa_rugosa | Rorug01G0204500 |
| rosa_samantha | Rh1AG221800 Rh1AG222000 Rh1BG187900 Rh1BG188200 Rh1CG206600 Rh1CG206900 Rh1DG217300 Rh1DG217500 |
| rosa_wichuraiana | Rw0G014800 Rw1G018850 Rw1G018900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1031 |
| Acc36I | ACCTGC | 1 cut(s) | 1171 |
| Acc65I | GGTACC | 1 cut(s) | 939 |
| AccB1I | GGYRCC | 3 cut(s) | 939, 1077, 1355 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 190, 607, 883, 1284 |
| AccI | GTMKAC | 1 cut(s) | 675 |
| AccII | CGCG | 1 cut(s) | 1110 |
| AciI | CCGC | 2 cut(s) | 389, 763 |
| AclI | AACGTT | 1 cut(s) | 845 |
| AclWI | GGATC | 4 cut(s) | 65, 1268, 1456, 1469 |
| AcoI | YGGCCR | 3 cut(s) | 181, 858, 1214 |
| AcyI | GRCGYC | 2 cut(s) | 672, 1026 |
| AfaI | GTAC | 6 cut(s) | 5, 130, 147, 448, 477, 941 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 190, 318, 438, 501, 512, 607, 883, 1284 |
| AflII | CTTAAG | 1 cut(s) | 356 |
| AgeI | ACCGGT | 1 cut(s) | 755 |
| AgsI | TTSAA | 6 cut(s) | 110, 709, 1145, 1249, 1317, 1448 |
| AhlI | ACTAGT | 1 cut(s) | 365 |
| AjnI | CCWGG | 5 cut(s) | 141, 500, 545, 906, 1384 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1241, 1273 |
| AleI | CACNNNNGTG | 2 cut(s) | 119, 1475 |
| AluBI | AGCT | 4 cut(s) | 88, 162, 425, 900 |
| AluI | AGCT | 4 cut(s) | 88, 162, 425, 900 |
| Alw21I | GWGCWC | 1 cut(s) | 376 |
| Alw26I | GTCTC | 1 cut(s) | 817 |
| AlwI | GGATC | 4 cut(s) | 65, 1268, 1456, 1469 |
| Ama87I | CYCGRG | 2 cut(s) | 1117, 1231 |
| AoxI | GGCC | 6 cut(s) | 181, 503, 858, 1067, 1214, 1382 |
| ApeKI | GCWGC | 2 cut(s) | 611, 927 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 830, 862 |
| AsiGI | ACCGGT | 1 cut(s) | 755 |
| Asp718I | GGTACC | 1 cut(s) | 939 |
| AspA2I | CCTAGG | 1 cut(s) | 1465 |
| AspS9I | GGNCC | 2 cut(s) | 124, 139 |
| AsuC2I | CCSGG | 3 cut(s) | 80, 1118, 1119 |
| AsuHPI | GGTGA | 6 cut(s) | 7, 269, 403, 745, 791, 1034 |
| AsuNHI | GCTAGC | 1 cut(s) | 31 |
| AvaI | CYCGRG | 2 cut(s) | 1117, 1231 |
| AvaII | GGWCC | 2 cut(s) | 124, 139 |
| AvrII | CCTAGG | 1 cut(s) | 1465 |
| AxyI | CCTNAGG | 1 cut(s) | 968 |
| BaeGI | GKGCMC | 1 cut(s) | 1080 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 137, 170 |
| BalI | TGGCCA | 1 cut(s) | 183 |
| BamHI | GGATCC | 1 cut(s) | 1461 |
| BanI | GGYRCC | 3 cut(s) | 939, 1077, 1355 |
| BbsI | GAAGAC | 1 cut(s) | 1256 |
| Bbv12I | GWGCWC | 1 cut(s) | 376 |
| BbvCI | CCTCAGC | 1 cut(s) | 796 |
| BbvI | GCAGC | 2 cut(s) | 598, 939 |
| BccI | CCATC | 7 cut(s) | 193, 326, 566, 725, 815, 1256, 1374 |
| BceAI | ACGGC | 3 cut(s) | 590, 873, 1201 |
| BciT130I | CCWGG | 5 cut(s) | 143, 502, 547, 908, 1386 |
| BclI | TGATCA | 1 cut(s) | 1092 |
| BcnI | CCSGG | 3 cut(s) | 80, 1118, 1119 |
| BcoDI | GTCTC | 1 cut(s) | 817 |
| BcuI | ACTAGT | 1 cut(s) | 365 |
| BfaI | CTAG | 4 cut(s) | 32, 366, 621, 1466 |
| BfrI | CTTAAG | 1 cut(s) | 356 |
| BfuAI | ACCTGC | 1 cut(s) | 1171 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1075, 1486 |
| BisI | GCNGC | 3 cut(s) | 612, 763, 928 |
| BlnI | CCTAGG | 1 cut(s) | 1465 |
| BlsI | GCNGC | 3 cut(s) | 613, 764, 929 |
| BmcAI | AGTACT | 1 cut(s) | 448 |
| Bme1390I | CCNGG | 8 cut(s) | 80, 143, 502, 547, 908, 1118, 1119, 1386 |
| Bme18I | GGWCC | 2 cut(s) | 124, 139 |
| BmeT110I | CYCGRG | 2 cut(s) | 1117, 1231 |
| BmgT120I | GGNCC | 2 cut(s) | 124, 139 |
| BmiI | GGNNCC | 4 cut(s) | 941, 1079, 1357, 1463 |
| BmrFI | CCNGG | 8 cut(s) | 80, 143, 502, 547, 908, 1118, 1119, 1386 |
| BmsI | GCATC | 4 cut(s) | 271, 533, 708, 914 |
| BmtI | GCTAGC | 1 cut(s) | 35 |
| BpiI | GAAGAC | 1 cut(s) | 1256 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 236, 268 |
| Bpu10I | CCTNAGC | 1 cut(s) | 796 |
| BpuMI | CCSGG | 3 cut(s) | 80, 1118, 1119 |
| Bsa29I | ATCGAT | 1 cut(s) | 1008 |
| BsaHI | GRCGYC | 2 cut(s) | 672, 1026 |
| BsaWI | WCCGGW | 2 cut(s) | 254, 755 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1288, 1318 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 190, 318, 438, 501, 512, 607, 883, 1284 |
| Bse118I | RCCGGY | 1 cut(s) | 755 |
| Bse1I | ACTGG | 3 cut(s) | 861, 1477, 1481 |
| Bse21I | CCTNAGG | 1 cut(s) | 968 |
| Bse3DI | GCAATG | 1 cut(s) | 474 |
| BseBI | CCWGG | 5 cut(s) | 143, 502, 547, 908, 1386 |
| BseCI | ATCGAT | 1 cut(s) | 1008 |
| BseGI | GGATG | 5 cut(s) | 337, 542, 736, 826, 1267 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 190, 318, 438, 501, 512, 607, 883, 1284 |
| BseMI | GCAATG | 1 cut(s) | 474 |
| BseMII | CTCAG | 4 cut(s) | 234, 310, 810, 828 |
| BseNI | ACTGG | 3 cut(s) | 861, 1477, 1481 |
| BseRI | GAGGAG | 2 cut(s) | 356, 1078 |
| BseSI | GKGCMC | 1 cut(s) | 1080 |
| BseX3I | CGGCCG | 1 cut(s) | 1214 |
| BseXI | GCAGC | 2 cut(s) | 598, 939 |
| BsgI | GTGCAG | 1 cut(s) | 597 |
| Bsh1236I | CGCG | 1 cut(s) | 1110 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1217 |
| BshFI | GGCC | 6 cut(s) | 183, 505, 860, 1069, 1216, 1384 |
| BshNI | GGYRCC | 3 cut(s) | 939, 1077, 1355 |
| BshTI | ACCGGT | 1 cut(s) | 755 |
| BshVI | ATCGAT | 1 cut(s) | 1008 |
| BsiEI | CGRYCG | 1 cut(s) | 1217 |
| BsiHKAI | GWGCWC | 1 cut(s) | 376 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1117, 1231 |
| BsiSI | CCGG | 5 cut(s) | 80, 255, 669, 756, 1118 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 190, 318, 438, 501, 512, 607, 883, 1284 |
| BsmAI | GTCTC | 1 cut(s) | 817 |
| BsnI | GGCC | 6 cut(s) | 183, 505, 860, 1069, 1216, 1384 |
| BsoBI | CYCGRG | 2 cut(s) | 1117, 1231 |
| Bsp1286I | GDGCHC | 2 cut(s) | 376, 1080 |
| Bsp1407I | TGTACA | 1 cut(s) | 3 |
| Bsp143I | GATC | 5 cut(s) | 70, 249, 1092, 1273, 1461 |
| Bsp19I | CCATGG | 2 cut(s) | 36, 408 |
| BspACI | CCGC | 2 cut(s) | 389, 763 |
| BspANI | GGCC | 6 cut(s) | 183, 505, 860, 1069, 1216, 1384 |
| BspCNI | CTCAG | 4 cut(s) | 235, 309, 809, 827 |
| BspDI | ATCGAT | 1 cut(s) | 1008 |
| BspFNI | CGCG | 1 cut(s) | 1110 |
| BspLI | GGNNCC | 4 cut(s) | 941, 1079, 1357, 1463 |
| BspMI | ACCTGC | 1 cut(s) | 1171 |
| BspOI | GCTAGC | 1 cut(s) | 35 |
| BspPI | GGATC | 4 cut(s) | 65, 1268, 1456, 1469 |
| BspT107I | GGYRCC | 3 cut(s) | 939, 1077, 1355 |
| BspTI | CTTAAG | 1 cut(s) | 356 |
| BsrDI | GCAATG | 1 cut(s) | 474 |
| BsrFI | RCCGGY | 1 cut(s) | 755 |
| BsrGI | TGTACA | 1 cut(s) | 3 |
| BsrI | ACTGG | 3 cut(s) | 861, 1477, 1481 |
| BssAI | RCCGGY | 1 cut(s) | 755 |
| BssMI | GATC | 5 cut(s) | 70, 249, 1092, 1273, 1461 |
| BssNI | GRCGYC | 2 cut(s) | 672, 1026 |
| BssT1I | CCWWGG | 6 cut(s) | 36, 408, 1102, 1207, 1278, 1465 |
| Bst2UI | CCWGG | 5 cut(s) | 143, 502, 547, 908, 1386 |
| Bst4CI | ACNGT | 7 cut(s) | 206, 748, 779, 983, 989, 1323, 1432 |
| Bst6I | CTCTTC | 1 cut(s) | 437 |
| BstACI | GRCGYC | 2 cut(s) | 672, 1026 |
| BstAFI | CTTAAG | 1 cut(s) | 356 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 60 |
| BstAUI | TGTACA | 1 cut(s) | 3 |
| BstC8I | GCNNGC | 4 cut(s) | 33, 90, 181, 309 |
| BstDEI | CTNAG | 5 cut(s) | 243, 296, 796, 814, 968 |
| BstDSI | CCRYGG | 4 cut(s) | 36, 408, 606, 1217 |
| BstF5I | GGATG | 5 cut(s) | 337, 542, 736, 826, 1267 |
| BstFNI | CGCG | 1 cut(s) | 1110 |
| BstKTI | GATC | 5 cut(s) | 73, 252, 1095, 1276, 1464 |
| BstMAI | GTCTC | 1 cut(s) | 817 |
| BstMBI | GATC | 5 cut(s) | 70, 249, 1092, 1273, 1461 |
| BstMCI | CGRYCG | 1 cut(s) | 1217 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 60, 611, 617, 1075, 1486 |
| BstNI | CCWGG | 5 cut(s) | 143, 502, 547, 908, 1386 |
| BstSCI | CCNGG | 8 cut(s) | 78, 141, 500, 545, 906, 1116, 1117, 1384 |
| BstSLI | GKGCMC | 1 cut(s) | 1080 |
| BstUI | CGCG | 1 cut(s) | 1110 |
| BstV1I | GCAGC | 2 cut(s) | 598, 939 |
| BstV2I | GAAGAC | 1 cut(s) | 1256 |
| BstX2I | RGATCY | 2 cut(s) | 70, 1461 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 121 |
| BstYI | RGATCY | 2 cut(s) | 70, 1461 |
| BstZI | CGGCCG | 1 cut(s) | 1214 |
| Bsu15I | ATCGAT | 1 cut(s) | 1008 |
| Bsu36I | CCTNAGG | 1 cut(s) | 968 |
| BsuRI | GGCC | 6 cut(s) | 183, 505, 860, 1069, 1216, 1384 |
| BsuTUI | ATCGAT | 1 cut(s) | 1008 |
| BtgI | CCRYGG | 4 cut(s) | 36, 408, 606, 1217 |
| BtsCI | GGATG | 5 cut(s) | 337, 542, 736, 826, 1267 |
| BtsI | GCAGTG | 3 cut(s) | 772, 918, 1095 |
| BtsIMutI | CAGTG | 7 cut(s) | 240, 304, 772, 918, 1095, 1319, 1470 |
| BveI | ACCTGC | 1 cut(s) | 1171 |
| Cac8I | GCNNGC | 4 cut(s) | 33, 90, 181, 309 |
| Cfr10I | RCCGGY | 1 cut(s) | 755 |
| Cfr13I | GGNCC | 2 cut(s) | 124, 139 |
| Cfr9I | CCCGGG | 1 cut(s) | 1117 |
| ClaI | ATCGAT | 1 cut(s) | 1008 |
| CseI | GACGC | 3 cut(s) | 661, 1034, 1116 |
| CsiI | ACCWGGT | 1 cut(s) | 141 |
| Csp6I | GTAC | 6 cut(s) | 4, 129, 146, 447, 476, 940 |
| CspAI | ACCGGT | 1 cut(s) | 755 |
| CviQI | GTAC | 6 cut(s) | 4, 129, 146, 447, 476, 940 |
| DdeI | CTNAG | 5 cut(s) | 243, 296, 796, 814, 968 |
| DpnI | GATC | 5 cut(s) | 72, 251, 1094, 1275, 1463 |
| DpnII | GATC | 5 cut(s) | 70, 249, 1092, 1273, 1461 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1031 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1031 |
| EaeI | YGGCCR | 3 cut(s) | 181, 858, 1214 |
| EagI | CGGCCG | 1 cut(s) | 1214 |
| Eam1104I | CTCTTC | 1 cut(s) | 437 |
| EarI | CTCTTC | 1 cut(s) | 437 |
| EclXI | CGGCCG | 1 cut(s) | 1214 |
| Eco130I | CCWWGG | 6 cut(s) | 36, 408, 1102, 1207, 1278, 1465 |
| Eco47I | GGWCC | 2 cut(s) | 124, 139 |
| Eco52I | CGGCCG | 1 cut(s) | 1214 |
| Eco81I | CCTNAGG | 1 cut(s) | 968 |
| Eco88I | CYCGRG | 2 cut(s) | 1117, 1231 |
| EcoRII | CCWGG | 5 cut(s) | 141, 500, 545, 906, 1384 |
| EcoT14I | CCWWGG | 6 cut(s) | 36, 408, 1102, 1207, 1278, 1465 |
| ErhI | CCWWGG | 6 cut(s) | 36, 408, 1102, 1207, 1278, 1465 |
| FbaI | TGATCA | 1 cut(s) | 1092 |
| FblI | GTMKAC | 1 cut(s) | 675 |
| Fnu4HI | GCNGC | 3 cut(s) | 612, 763, 928 |
| FokI | GGATG | 5 cut(s) | 344, 529, 743, 833, 1274 |
| Fsp4HI | GCNGC | 3 cut(s) | 612, 763, 928 |
| FspBI | CTAG | 4 cut(s) | 32, 366, 621, 1466 |
| GluI | GCNGC | 3 cut(s) | 612, 763, 928 |
| HaeIII | GGCC | 6 cut(s) | 183, 505, 860, 1069, 1216, 1384 |
| HapII | CCGG | 5 cut(s) | 80, 255, 669, 756, 1118 |
| HgaI | GACGC | 3 cut(s) | 661, 1034, 1116 |
| Hin1I | GRCGYC | 2 cut(s) | 672, 1026 |
| HincII | GTYRAC | 1 cut(s) | 156 |
| HindII | GTYRAC | 1 cut(s) | 156 |
| HinfI | GANTC | 5 cut(s) | 167, 173, 532, 1237, 1454 |
| HpaII | CCGG | 5 cut(s) | 80, 255, 669, 756, 1118 |
| HphI | GGTGA | 6 cut(s) | 7, 269, 403, 745, 791, 1034 |
| Hpy166II | GTNNAC | 7 cut(s) | 6, 156, 676, 701, 866, 1287, 1409 |
| Hpy188I | TCNGA | 7 cut(s) | 68, 75, 166, 172, 198, 288, 904 |
| Hpy188III | TCNNGA | 2 cut(s) | 773, 1246 |
| Hpy8I | GTNNAC | 7 cut(s) | 6, 156, 676, 701, 866, 1287, 1409 |
| Hpy99I | CGWCG | 1 cut(s) | 1037 |
| HpyAV | CCTTC | 3 cut(s) | 31, 340, 679 |
| HpyCH4III | ACNGT | 7 cut(s) | 206, 748, 779, 983, 989, 1323, 1432 |
| HpyCH4IV | ACGT | 2 cut(s) | 474, 845 |
| HpyCH4V | TGCA | 5 cut(s) | 54, 566, 614, 927, 1310 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 60, 611, 617, 1075, 1486 |
| HpyF3I | CTNAG | 5 cut(s) | 243, 296, 796, 814, 968 |
| HpySE526I | ACGT | 2 cut(s) | 474, 845 |
| Hsp92I | GRCGYC | 2 cut(s) | 672, 1026 |
| KpnI | GGTACC | 1 cut(s) | 943 |
| Ksp22I | TGATCA | 1 cut(s) | 1092 |
| Kzo9I | GATC | 5 cut(s) | 70, 249, 1092, 1273, 1461 |
| LmnI | GCTCC | 1 cut(s) | 167 |
| Lsp1109I | GCAGC | 2 cut(s) | 598, 939 |
| LweI | GCATC | 4 cut(s) | 271, 533, 708, 914 |
| MabI | ACCWGGT | 1 cut(s) | 141 |
| MaeI | CTAG | 4 cut(s) | 32, 366, 621, 1466 |
| MaeII | ACGT | 2 cut(s) | 474, 845 |
| MaeIII | GTNAC | 8 cut(s) | 13, 391, 629, 779, 836, 983, 989, 1022 |
| MalI | GATC | 5 cut(s) | 72, 251, 1094, 1275, 1463 |
| MboI | GATC | 5 cut(s) | 70, 249, 1092, 1273, 1461 |
| MboII | GAAGA | 5 cut(s) | 98, 290, 454, 721, 1261 |
| MflI | RGATCY | 2 cut(s) | 70, 1461 |
| MhlI | GDGCHC | 2 cut(s) | 376, 1080 |
| MlsI | TGGCCA | 1 cut(s) | 183 |
| MluCI | AATT | 3 cut(s) | 265, 974, 1045 |
| MluNI | TGGCCA | 1 cut(s) | 183 |
| MlyI | GAGTC | 3 cut(s) | 541, 1231, 1463 |
| MmeI | TCCRAC | 2 cut(s) | 519, 1110 |
| Mox20I | TGGCCA | 1 cut(s) | 183 |
| MscI | TGGCCA | 1 cut(s) | 183 |
| MseI | TTAA | 5 cut(s) | 357, 597, 933, 1185, 1401 |
| MslI | CAYNNNNRTG | 4 cut(s) | 119, 996, 1058, 1475 |
| Msp20I | TGGCCA | 1 cut(s) | 183 |
| MspCI | CTTAAG | 1 cut(s) | 356 |
| MspI | CCGG | 5 cut(s) | 80, 255, 669, 756, 1118 |
| MspR9I | CCNGG | 8 cut(s) | 80, 143, 502, 547, 908, 1118, 1119, 1386 |
| MvaI | CCWGG | 5 cut(s) | 143, 502, 547, 908, 1386 |
| MvnI | CGCG | 1 cut(s) | 1110 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 60, 611, 617, 1075, 1486 |
| NciI | CCSGG | 3 cut(s) | 80, 1118, 1119 |
| NcoI | CCATGG | 2 cut(s) | 36, 408 |
| NdeII | GATC | 5 cut(s) | 70, 249, 1092, 1273, 1461 |
| NheI | GCTAGC | 1 cut(s) | 31 |
| NlaIV | GGNNCC | 4 cut(s) | 941, 1079, 1357, 1463 |
| NmeAIII | GCCGAG | 1 cut(s) | 258 |
| NmuCI | GTSAC | 8 cut(s) | 13, 391, 629, 779, 836, 983, 989, 1022 |
| OliI | CACNNNNGTG | 2 cut(s) | 119, 1475 |
| PaeR7I | CTCGAG | 1 cut(s) | 1231 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1032 |
| PfeI | GAWTC | 2 cut(s) | 167, 173 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 190, 607, 883, 1284 |
| PinAI | ACCGGT | 1 cut(s) | 755 |
| PkrI | GCNGC | 3 cut(s) | 613, 764, 929 |
| PleI | GAGTC | 3 cut(s) | 540, 1231, 1462 |
| PpsI | GAGTC | 3 cut(s) | 540, 1231, 1462 |
| Psp1406I | AACGTT | 1 cut(s) | 845 |
| Psp6I | CCWGG | 5 cut(s) | 141, 500, 545, 906, 1384 |
| PspGI | CCWGG | 5 cut(s) | 141, 500, 545, 906, 1384 |
| PspN4I | GGNNCC | 4 cut(s) | 941, 1079, 1357, 1463 |
| PspPI | GGNCC | 2 cut(s) | 124, 139 |
| PspXI | VCTCGAGB | 1 cut(s) | 1231 |
| PsuI | RGATCY | 2 cut(s) | 70, 1461 |
| RsaI | GTAC | 6 cut(s) | 5, 130, 147, 448, 477, 941 |
| RsaNI | GTAC | 6 cut(s) | 4, 129, 146, 447, 476, 940 |
| RseI | CAYNNNNRTG | 4 cut(s) | 119, 996, 1058, 1475 |
| SaqAI | TTAA | 5 cut(s) | 357, 597, 933, 1185, 1401 |
| SatI | GCNGC | 3 cut(s) | 612, 763, 928 |
| Sau3AI | GATC | 5 cut(s) | 70, 249, 1092, 1273, 1461 |
| Sau96I | GGNCC | 2 cut(s) | 124, 139 |
| ScaI | AGTACT | 1 cut(s) | 448 |
| SchI | GAGTC | 3 cut(s) | 541, 1231, 1463 |
| ScrFI | CCNGG | 8 cut(s) | 80, 143, 502, 547, 908, 1118, 1119, 1386 |
| SduI | GDGCHC | 2 cut(s) | 376, 1080 |
| SexAI | ACCWGGT | 1 cut(s) | 141 |
| SfaNI | GCATC | 4 cut(s) | 271, 533, 708, 914 |
| Sfr274I | CTCGAG | 1 cut(s) | 1231 |
| SinI | GGWCC | 2 cut(s) | 124, 139 |
| SlaI | CTCGAG | 1 cut(s) | 1231 |
| SmaI | CCCGGG | 1 cut(s) | 1119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 119, 996, 1058, 1475 |
| SmlI | CTYRAG | 2 cut(s) | 356, 1231 |
| SmoI | CTYRAG | 2 cut(s) | 356, 1231 |
| SpeI | ACTAGT | 1 cut(s) | 365 |
| Sse9I | AATT | 3 cut(s) | 265, 974, 1045 |
| SsiI | CCGC | 2 cut(s) | 389, 763 |
| SspMI | CTAG | 4 cut(s) | 32, 366, 621, 1466 |
| StyD4I | CCNGG | 8 cut(s) | 78, 141, 500, 545, 906, 1116, 1117, 1384 |
| StyI | CCWWGG | 6 cut(s) | 36, 408, 1102, 1207, 1278, 1465 |
| TaaI | ACNGT | 7 cut(s) | 206, 748, 779, 983, 989, 1323, 1432 |
| TaiI | ACGT | 2 cut(s) | 477, 848 |
| TaqI | TCGA | 2 cut(s) | 1008, 1232 |
| TasI | AATT | 3 cut(s) | 265, 974, 1045 |
| TatI | WGTACW | 2 cut(s) | 3, 446 |
| TauI | GCSGC | 1 cut(s) | 765 |
| TfiI | GAWTC | 2 cut(s) | 167, 173 |
| Tru1I | TTAA | 5 cut(s) | 357, 597, 933, 1185, 1401 |
| Tru9I | TTAA | 5 cut(s) | 357, 597, 933, 1185, 1401 |
| TscAI | CASTG | 7 cut(s) | 247, 304, 772, 918, 1102, 1326, 1477 |
| TseFI | GTSAC | 8 cut(s) | 13, 391, 629, 779, 836, 983, 989, 1022 |
| TseI | GCWGC | 2 cut(s) | 611, 927 |
| Tsp45I | GTSAC | 8 cut(s) | 13, 391, 629, 779, 836, 983, 989, 1022 |
| TspDTI | ATGAA | 6 cut(s) | 435, 485, 1003, 1355, 1382, 1432 |
| TspGWI | ACGGA | 2 cut(s) | 116, 1304 |
| TspMI | CCCGGG | 1 cut(s) | 1117 |
| TspRI | CASTG | 7 cut(s) | 247, 304, 772, 918, 1102, 1326, 1477 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 190, 607, 883, 1284 |
| Vha464I | CTTAAG | 1 cut(s) | 356 |
| VpaK11BI | GGWCC | 2 cut(s) | 124, 139 |
| XhoI | CTCGAG | 1 cut(s) | 1231 |
| XmaI | CCCGGG | 1 cut(s) | 1117 |
| XmaJI | CCTAGG | 1 cut(s) | 1465 |
| XmiI | GTMKAC | 1 cut(s) | 675 |
| XspI | CTAG | 4 cut(s) | 32, 366, 621, 1466 |
| ZrmI | AGTACT | 1 cut(s) | 448 |