Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007373

Physical Location & Seq

Genomic Coordinates Forward (+)

10569474 .. 10570358

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTTCTTCCACATCCTGCTTCCAAGATCCGAAACCGGTTCAACTGGCCCTAGATAGCGTTCTTCAAGCCACCAATGTGGTCTGTACCTCGATGGACCGGGTACATGTGTTGGCAAGCTCTGAATCGGATTCTTCTGGCCGTGACGTGGCTCTGATGGACTGTGAAAGACTATATGATGAGAGTGTGCCGAGGCTGATGACTGAGTTGATATCCGGCGAGGGTAATTATACCGGAGAAGATGCTCGGACATGGCTCAGCGGTGTGCTTGCTAACCATAGGAGTTGTTGGGATAGCTTGGAAGAGAACGGTGTTGTTAAGAATACTAGTGGTGCTCAACTGTATAGTGCGGTGGCACAAAACTTGACCGTGGTGCTTGGTGAAGCTCTTGCTCTGTATGGGAAGAGTACTATGACTACTGATGAGGCAATGAAAGTGCGGCATGGACAAAACTCCAATGCAAGGCCATATGGAGGGCTTTTAGCATCGTGGAGTCCGGCAAGATCCAGAGCTGACTTTGTGGTGGCAAAAGATGGTTCACGCACTCACACAACAATTAACCATGCCGTGGCTGCACTTGCTAGAATGGGCGACAGACGACCTCCAAGAGCCATAATCTATGTGAAATCCGGCGTCTACAATGAGAAGGTAGAAATCGGTGGACACATGAAGAATGTGATGGGATGGCATGGACAGAACTGTAATCAGGTAGCCGCAGTGTCGTTGATGGTGACACCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

248

Amino Acids

26.64

Weight (kDa)

6.38

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	13 - 116	2.8e-12	Plant invertase/pectin methylesterase inhibitor
Pectinesterase	PF01095	172 - 227	5.4e-10	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60730
fragaria_vesca	FvH4_7g11333 FvH4_7g11340 FvH4_7g11360
malus_domestica	MD07G1118200.v1.1
prunus_persica	Prupe.2G141200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349551 RchiOBHm_Chr1g0349581
rosa_laevigata	RLG00000028540 RLG00000028543
rosa_multiflora	Rmu_sc0002495.1_g000023 Rmu_sc0006074.1_g000009
rosa_roxburghii	Rroxscaffold_4G00305450
rosa_rugosa	Rorug01G0204500
rosa_samantha	Rh1AG221800 Rh1AG222000 Rh1BG187900 Rh1BG188200 Rh1CG206600 Rh1CG206900 Rh1DG217300 Rh1DG217500
rosa_wichuraiana	Rw0G014800 Rw1G018850 Rw1G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	636
AciI	CCGC	4 cut(s)	261, 350, 439, 714
AclWI	GGATC	2 cut(s)	23, 498
AcoI	YGGCCR	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	633
AfaI	GTAC	3 cut(s)	88, 105, 409
AfiI	CCNNNNNNNGG	4 cut(s)	148, 462, 473, 568
AflIII	ACRYGT	1 cut(s)	106
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	44, 68
AhlI	ACTAGT	1 cut(s)	326
AjiI	CACGTC	1 cut(s)	148
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	4 cut(s)	120, 297, 386, 512
AluI	AGCT	4 cut(s)	120, 297, 386, 512
Alw21I	GWGCWC	1 cut(s)	337
AlwI	GGATC	2 cut(s)	23, 498
AoxI	GGCC	3 cut(s)	48, 139, 464
ApeKI	GCWGC	1 cut(s)	572
AsiGI	ACCGGT	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	49, 97
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	392, 742
AvaII	GGWCC	1 cut(s)	97
BaeI	ACNNNNGTAYC	2 cut(s)	95, 128
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	6 cut(s)	88, 151, 527, 673, 678, 721
BceAI	ACGGC	2 cut(s)	126, 551
BcnI	CCSGG	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	3 cut(s)	53, 327, 582
BisI	GCNGC	3 cut(s)	440, 573, 714
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	3 cut(s)	441, 574, 715
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	49, 97
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	232, 494
Bpu1102I	GCTNAGC	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	633
BsaJI	CCNNGG	3 cut(s)	191, 369, 567
BsaWI	WCCGGW	2 cut(s)	37, 233
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 462, 473, 568
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	191, 369, 567
BseGI	GGATG	2 cut(s)	14, 689
BseLI	CCNNNNNNNGG	4 cut(s)	148, 462, 473, 568
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	195, 271
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	559
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	3 cut(s)	50, 141, 466
BshTI	ACCGGT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	6 cut(s)	38, 100, 216, 234, 497, 630
BslI	CCNNNNNNNGG	4 cut(s)	148, 462, 473, 568
BsnI	GGCC	3 cut(s)	50, 141, 466
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	28, 503
Bsp1720I	GCTNAGC	1 cut(s)	257
BspACI	CCGC	4 cut(s)	261, 350, 439, 714
BspANI	GGCC	3 cut(s)	50, 141, 466
BspCNI	CTCAG	2 cut(s)	196, 270
BspPI	GGATC	2 cut(s)	23, 498
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	191, 369, 567
BssMI	GATC	2 cut(s)	28, 503
BssNI	GRCGYC	1 cut(s)	633
Bst4CI	ACNGT	5 cut(s)	164, 311, 342, 370, 701
Bst6I	CTCTTC	2 cut(s)	297, 398
BstACI	GRCGYC	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	118, 270
BstDEI	CTNAG	2 cut(s)	204, 257
BstDSI	CCRYGG	2 cut(s)	369, 567
BstF5I	GGATG	2 cut(s)	14, 689
BstKTI	GATC	2 cut(s)	31, 506
BstMBI	GATC	2 cut(s)	28, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	572, 578
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	559
BstX2I	RGATCY	2 cut(s)	28, 503
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	2 cut(s)	28, 503
BsuRI	GGCC	3 cut(s)	50, 141, 466
BtgI	CCRYGG	2 cut(s)	369, 567
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	14, 689
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	1 cut(s)	723
Cac8I	GCNNGC	2 cut(s)	118, 270
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	49, 97
CseI	GACGC	1 cut(s)	622
Csp6I	GTAC	3 cut(s)	87, 104, 408
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	6 cut(s)	107, 252, 443, 563, 667, 689
CviQI	GTAC	3 cut(s)	87, 104, 408
DdeI	CTNAG	2 cut(s)	204, 257
DpnI	GATC	2 cut(s)	30, 505
DpnII	GATC	2 cut(s)	28, 503
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	297, 398
EarI	CTCTTC	2 cut(s)	297, 398
Eco32I	GATATC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	213
FaeI	CATG	6 cut(s)	110, 255, 446, 566, 670, 692
FatI	CATG	6 cut(s)	106, 251, 442, 562, 666, 688
FauNDI	CATATG	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	3 cut(s)	440, 573, 714
FokI	GGATG	1 cut(s)	696
Fsp4HI	GCNGC	3 cut(s)	440, 573, 714
FspBI	CTAG	3 cut(s)	53, 327, 582
GluI	GCNGC	3 cut(s)	440, 573, 714
HaeIII	GGCC	3 cut(s)	50, 141, 466
HapII	CCGG	6 cut(s)	38, 100, 216, 234, 497, 630
HgaI	GACGC	1 cut(s)	622
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	6 cut(s)	110, 255, 446, 566, 670, 692
HinfI	GANTC	3 cut(s)	125, 131, 493
HpaII	CCGG	6 cut(s)	38, 100, 216, 234, 497, 630
HphI	GGTGA	2 cut(s)	392, 742
Hpy166II	GTNNAC	3 cut(s)	539, 637, 662
Hpy188I	TCNGA	5 cut(s)	33, 124, 130, 156, 249
Hpy188III	TCNNGA	1 cut(s)	507
Hpy8I	GTNNAC	3 cut(s)	539, 637, 662
HpyAV	CCTTC	1 cut(s)	640
HpyCH4III	ACNGT	5 cut(s)	164, 311, 342, 370, 701
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	461, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	572, 578
HpyF3I	CTNAG	2 cut(s)	204, 257
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	6 cut(s)	110, 255, 446, 566, 670, 692
Kzo9I	GATC	2 cut(s)	28, 503
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	2 cut(s)	232, 494
MaeI	CTAG	3 cut(s)	53, 327, 582
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	143, 730
MalI	GATC	2 cut(s)	30, 505
MboI	GATC	2 cut(s)	28, 503
MboII	GAAGA	6 cut(s)	56, 126, 251, 314, 415, 682
MflI	RGATCY	2 cut(s)	28, 503
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	2 cut(s)	226, 555
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	6 cut(s)	100, 186, 214, 418, 467, 612
MseI	TTAA	2 cut(s)	318, 558
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	6 cut(s)	38, 100, 216, 234, 497, 630
MspR9I	CCNGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	572, 578
NciI	CCSGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	2 cut(s)	28, 503
NlaIII	CATG	6 cut(s)	110, 255, 446, 566, 670, 692
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	2 cut(s)	143, 730
NspI	RCATGY	1 cut(s)	110
OliI	CACNNNNGTG	1 cut(s)	77
PciI	ACATGT	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	125, 131
PflMI	CCANNNNNTGG	1 cut(s)	568
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	441, 574, 715
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PscI	ACATGT	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	49, 97
PsuI	RGATCY	2 cut(s)	28, 503
RsaI	GTAC	3 cut(s)	88, 105, 409
RsaNI	GTAC	3 cut(s)	87, 104, 408
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	318, 558
SatI	GCNGC	3 cut(s)	440, 573, 714
Sau3AI	GATC	2 cut(s)	28, 503
Sau96I	GGNCC	2 cut(s)	49, 97
ScaI	AGTACT	1 cut(s)	409
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	2 cut(s)	232, 494
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	77
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	2 cut(s)	226, 555
SsiI	CCGC	4 cut(s)	261, 350, 439, 714
SspMI	CTAG	3 cut(s)	53, 327, 582
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	5 cut(s)	164, 311, 342, 370, 701
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	92
TasI	AATT	2 cut(s)	226, 555
TatI	WGTACW	1 cut(s)	407
TauI	GCSGC	2 cut(s)	442, 716
TfiI	GAWTC	2 cut(s)	125, 131
Tru1I	TTAA	2 cut(s)	318, 558
Tru9I	TTAA	2 cut(s)	318, 558
TscAI	CASTG	1 cut(s)	723
TseFI	GTSAC	2 cut(s)	143, 730
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	2 cut(s)	143, 730
TspDTI	ATGAA	2 cut(s)	446, 683
TspRI	CASTG	1 cut(s)	723
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	97
XceI	RCATGY	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	3 cut(s)	53, 327, 582
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.