Rmu_sc0002495.1_g000023

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002495.1
Physical Location & Seq
Forward (+)
101994 .. 104337
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002495.1_g000023.1.cds

Sequence Viewer

Length: 1341 bp
atgtccacttctgtcaccaccttcctcctgctagccatggctatggcttcttccatctcttgcctccgagatccgaacccggttcagctcgccctaaatggcgttcttcaagccaccaatgtggtccgtacctctatggacctggtacatgggttggcaagctccgaatcggattctgctggccatgatgtggctctgatggactgtgaaagactatatgatgagagtgtgccgaggctcaaagagatctcctgcgagggtaattataccggagaagatgctcggacatggctcagtggtgtgcttgccaaccataggagttgttgggatggcttggaggagaagggttttgttgagaataccagtggtgctcatcattatagtgcggtggcacaaaacgtgcttggtgaagctcttgctttgcatggggagagtactatgactactgatgaggcaatgatagaagtaccacatggacataattccaaccccaagccaaatggagggcttttagcatcatggagtccagcaacatccagggctgactttgtggtggcaaaagatggttcaggcactcacacaacaattaaccaagccgtggttgcacttgctagaatgggtcacaggcgacctccaagagccataatctatgtgaaatccggcgtctacaatgcaagggacataacgtttgagaatacggccggtccacaaaagcaccaagcagtggcattgagggtcagctctgacctgtcagtgttttaccgatgcagcattaaggggtaccaagacactctctacgcccattccctaaggcaattctaccgtgactgtcacatatatggcacaatcgatttcatattcggtgacgcccccgtcgtgctacaaaattgcgacattcttgtgaggaggccaatggggcaccaatccaacatgatcactgcccaaggacgcgacaacctgggagagaacacgggcattgttattcaaggttgtcacgttagacctgcgagggagtttgagggggttaagggttcgtataggacttaccttggtcgaccgtggcagagatactcgaggactctgttcttgaagacagatttggatggtttggttgatccaaaggggtggacggaatggagaggtagtttttcactttcaacactgtattatggggagtatatgaatgtaggggtgggtgcctcaactgacaagagggttagatggcctggttttcatgtgcttagtagtccacaggagttcagccctttcacagttagtcgtttcattcaaggagagtcatggattctaggcactgatgtgccagtttggcttggaatataa

Protein Analysis

446

Amino Acids

49.16

Weight (kDa)

6.35

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
Acc36I ACCTGC 1 cut(s) 1012
Acc65I GGTACC 1 cut(s) 780
AccB1I GGYRCC 3 cut(s) 780, 918, 1196
AccB7I CCANNNNNTGG 3 cut(s) 190, 598, 724
AccI GTMKAC 2 cut(s) 666, 1054
AccII CGCG 1 cut(s) 951
AciI CCGC 1 cut(s) 386
AclI AACGTT 1 cut(s) 686
AclWI GGATC 2 cut(s) 65, 1109
AcoI YGGCCR 2 cut(s) 181, 699
AcyI GRCGYC 2 cut(s) 663, 867
AfaI GTAC 5 cut(s) 130, 147, 436, 468, 782
AfiI CCNNNNNNNGG 5 cut(s) 190, 315, 503, 598, 724
AgsI TTSAA 5 cut(s) 110, 986, 1090, 1158, 1289
AjnI CCWGG 4 cut(s) 141, 536, 957, 1225
AjuI GAANNNNNNNTTGG 2 cut(s) 1082, 1114
AleI CACNNNNGTG 2 cut(s) 119, 1316
AluBI AGCT 4 cut(s) 88, 162, 413, 741
AluI AGCT 4 cut(s) 88, 162, 413, 741
Alw21I GWGCWC 1 cut(s) 373
AlwI GGATC 2 cut(s) 65, 1109
Ama87I CYCGRG 1 cut(s) 1072
AoxI GGCC 4 cut(s) 181, 699, 908, 1223
ApeKI GCWGC 1 cut(s) 768
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
Asp718I GGTACC 1 cut(s) 780
AspS9I GGNCC 3 cut(s) 124, 139, 704
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 7, 419, 875
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 1072
AvaII GGWCC 3 cut(s) 124, 139, 704
AxyI CCTNAGG 1 cut(s) 809
BaeGI GKGCMC 1 cut(s) 921
BaeI ACNNNNGTAYC 2 cut(s) 137, 170
BalI TGGCCA 1 cut(s) 183
BanI GGYRCC 3 cut(s) 780, 918, 1196
BbsI GAAGAC 1 cut(s) 1097
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 780
BccI CCATC 6 cut(s) 62, 193, 323, 557, 1097, 1215
BceAI ACGGC 2 cut(s) 581, 714
BciT130I CCWGG 4 cut(s) 143, 538, 959, 1227
BclI TGATCA 1 cut(s) 933
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 3 cut(s) 32, 612, 1307
BfuAI ACCTGC 1 cut(s) 1012
BglI GCCNNNNNGGC 2 cut(s) 916, 1327
BglII AGATCT 1 cut(s) 246
BisI GCNGC 1 cut(s) 769
BlsI GCNGC 1 cut(s) 770
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 5 cut(s) 80, 143, 538, 959, 1227
Bme18I GGWCC 3 cut(s) 124, 139, 704
BmeT110I CYCGRG 1 cut(s) 1072
BmgT120I GGNCC 3 cut(s) 124, 139, 704
BmiI GGNNCC 3 cut(s) 782, 920, 1198
BmrFI CCNGG 5 cut(s) 80, 143, 538, 959, 1227
BmsI GCATC 3 cut(s) 268, 524, 755
BmtI GCTAGC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 1097
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 849
BsaHI GRCGYC 2 cut(s) 663, 867
BsaJI CCNNGG 8 cut(s) 36, 233, 537, 597, 943, 958, 1048, 1058
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 1129, 1159
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 315, 503, 598, 724
Bse118I RCCGGY 1 cut(s) 701
Bse1I ACTGG 2 cut(s) 363, 1322
Bse21I CCTNAGG 1 cut(s) 809
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 4 cut(s) 143, 538, 959, 1227
BseCI ATCGAT 1 cut(s) 849
BseDI CCNNGG 8 cut(s) 36, 233, 537, 597, 943, 958, 1048, 1058
BseGI GGATG 3 cut(s) 334, 533, 1108
BseLI CCNNNNNNNGG 5 cut(s) 190, 315, 503, 598, 724
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 307
BseNI ACTGG 2 cut(s) 363, 1322
BseRI GAGGAG 2 cut(s) 353, 919
BseSI GKGCMC 1 cut(s) 921
BseX3I CGGCCG 1 cut(s) 699
BseXI GCAGC 1 cut(s) 780
Bsh1236I CGCG 1 cut(s) 951
Bsh1285I CGRYCG 2 cut(s) 702, 1058
BshFI GGCC 4 cut(s) 183, 701, 910, 1225
BshNI GGYRCC 3 cut(s) 780, 918, 1196
BshVI ATCGAT 1 cut(s) 849
BsiEI CGRYCG 2 cut(s) 702, 1058
BsiHKAI GWGCWC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 1072
BsiSI CCGG 4 cut(s) 80, 270, 660, 702
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 5 cut(s) 190, 315, 503, 598, 724
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 4 cut(s) 183, 701, 910, 1225
BsoBI CYCGRG 1 cut(s) 1072
Bsp1286I GDGCHC 2 cut(s) 373, 921
Bsp143I GATC 4 cut(s) 70, 246, 933, 1114
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 1 cut(s) 386
BspANI GGCC 4 cut(s) 183, 701, 910, 1225
BspCNI CTCAG 1 cut(s) 306
BspDI ATCGAT 1 cut(s) 849
BspFNI CGCG 1 cut(s) 951
BspLI GGNNCC 3 cut(s) 782, 920, 1198
BspMI ACCTGC 1 cut(s) 1012
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 2 cut(s) 65, 1109
BspT107I GGYRCC 3 cut(s) 780, 918, 1196
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 701
BsrI ACTGG 2 cut(s) 363, 1322
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 8 cut(s) 36, 233, 537, 597, 943, 958, 1048, 1058
BssMI GATC 4 cut(s) 70, 246, 933, 1114
BssNI GRCGYC 2 cut(s) 663, 867
BssT1I CCWWGG 3 cut(s) 36, 943, 1048
Bst2UI CCWGG 4 cut(s) 143, 538, 959, 1227
Bst4CI ACNGT 6 cut(s) 206, 824, 830, 1059, 1164, 1273
BstACI GRCGYC 2 cut(s) 663, 867
BstC8I GCNNGC 5 cut(s) 33, 90, 160, 181, 306
BstDEI CTNAG 3 cut(s) 293, 809, 1241
BstDSI CCRYGG 3 cut(s) 36, 597, 1058
BstF5I GGATG 3 cut(s) 334, 533, 1108
BstFNI CGCG 1 cut(s) 951
BstKTI GATC 4 cut(s) 73, 249, 936, 1117
BstMBI GATC 4 cut(s) 70, 246, 933, 1114
BstMCI CGRYCG 2 cut(s) 702, 1058
BstMWI GCNNNNNNNGC 3 cut(s) 602, 916, 1327
BstNI CCWGG 4 cut(s) 143, 538, 959, 1227
BstSCI CCNGG 5 cut(s) 78, 141, 536, 957, 1225
BstSLI GKGCMC 1 cut(s) 921
BstUI CGCG 1 cut(s) 951
BstV1I GCAGC 1 cut(s) 780
BstV2I GAAGAC 1 cut(s) 1097
BstX2I RGATCY 2 cut(s) 70, 246
BstXI CCANNNNNNTGG 3 cut(s) 43, 121, 1125
BstYI RGATCY 2 cut(s) 70, 246
BstZI CGGCCG 1 cut(s) 699
Bsu15I ATCGAT 1 cut(s) 849
Bsu36I CCTNAGG 1 cut(s) 809
BsuRI GGCC 4 cut(s) 183, 701, 910, 1225
BsuTUI ATCGAT 1 cut(s) 849
BtgI CCRYGG 3 cut(s) 36, 597, 1058
BtsCI GGATG 3 cut(s) 334, 533, 1108
BtsI GCAGTG 2 cut(s) 729, 936
BtsIMutI CAGTG 7 cut(s) 301, 370, 729, 759, 936, 1160, 1311
BveI ACCTGC 1 cut(s) 1012
Cac8I GCNNGC 5 cut(s) 33, 90, 160, 181, 306
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 3 cut(s) 124, 139, 704
ClaI ATCGAT 1 cut(s) 849
CseI GACGC 3 cut(s) 652, 875, 957
CsiI ACCWGGT 1 cut(s) 141
Csp6I GTAC 5 cut(s) 129, 146, 435, 467, 781
CviQI GTAC 5 cut(s) 129, 146, 435, 467, 781
DdeI CTNAG 3 cut(s) 293, 809, 1241
DpnI GATC 4 cut(s) 72, 248, 935, 1116
DpnII GATC 4 cut(s) 70, 246, 933, 1114
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
EaeI YGGCCR 2 cut(s) 181, 699
EagI CGGCCG 1 cut(s) 699
EclXI CGGCCG 1 cut(s) 699
Eco130I CCWWGG 3 cut(s) 36, 943, 1048
Eco47I GGWCC 3 cut(s) 124, 139, 704
Eco52I CGGCCG 1 cut(s) 699
Eco81I CCTNAGG 1 cut(s) 809
Eco88I CYCGRG 1 cut(s) 1072
EcoRII CCWGG 4 cut(s) 141, 536, 957, 1225
EcoT14I CCWWGG 3 cut(s) 36, 943, 1048
ErhI CCWWGG 3 cut(s) 36, 943, 1048
FaqI GGGAC 1 cut(s) 692
FbaI TGATCA 1 cut(s) 933
FblI GTMKAC 2 cut(s) 666, 1054
Fnu4HI GCNGC 1 cut(s) 769
FokI GGATG 3 cut(s) 341, 520, 1115
Fsp4HI GCNGC 1 cut(s) 769
FspBI CTAG 3 cut(s) 32, 612, 1307
GluI GCNGC 1 cut(s) 769
HaeIII GGCC 4 cut(s) 183, 701, 910, 1225
HapII CCGG 4 cut(s) 80, 270, 660, 702
HgaI GACGC 3 cut(s) 652, 875, 957
Hin1I GRCGYC 2 cut(s) 663, 867
HincII GTYRAC 1 cut(s) 1055
HindII GTYRAC 1 cut(s) 1055
HinfI GANTC 6 cut(s) 167, 173, 523, 1078, 1295, 1303
HpaII CCGG 4 cut(s) 80, 270, 660, 702
HphI GGTGA 3 cut(s) 7, 419, 875
Hpy166II GTNNAC 6 cut(s) 6, 667, 707, 1055, 1128, 1250
Hpy188I TCNGA 7 cut(s) 68, 75, 166, 172, 198, 285, 745
Hpy188III TCNNGA 1 cut(s) 1087
Hpy8I GTNNAC 6 cut(s) 6, 667, 707, 1055, 1128, 1250
Hpy99I CGWCG 1 cut(s) 878
HpyAV CCTTC 2 cut(s) 31, 337
HpyCH4III ACNGT 6 cut(s) 206, 824, 830, 1059, 1164, 1273
HpyCH4IV ACGT 3 cut(s) 399, 686, 996
HpyCH4V TGCA 4 cut(s) 424, 605, 674, 768
HpyF10VI GCNNNNNNNGC 3 cut(s) 602, 916, 1327
HpyF3I CTNAG 3 cut(s) 293, 809, 1241
HpySE526I ACGT 3 cut(s) 399, 686, 996
Hsp92I GRCGYC 2 cut(s) 663, 867
KpnI GGTACC 1 cut(s) 784
Ksp22I TGATCA 1 cut(s) 933
Kzo9I GATC 4 cut(s) 70, 246, 933, 1114
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 1 cut(s) 780
LweI GCATC 3 cut(s) 268, 524, 755
MabI ACCWGGT 1 cut(s) 141
MaeI CTAG 3 cut(s) 32, 612, 1307
MaeII ACGT 3 cut(s) 399, 686, 996
MaeIII GTNAC 6 cut(s) 13, 620, 824, 830, 863, 992
MalI GATC 4 cut(s) 72, 248, 935, 1116
MboI GATC 4 cut(s) 70, 246, 933, 1114
MboII GAAGA 4 cut(s) 42, 98, 287, 1102
MflI RGATCY 2 cut(s) 70, 246
MhlI GDGCHC 2 cut(s) 373, 921
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 5 cut(s) 262, 481, 585, 815, 886
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 3 cut(s) 532, 1072, 1304
MmeI TCCRAC 2 cut(s) 510, 951
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 3 cut(s) 588, 774, 1026
MslI CAYNNNNRTG 6 cut(s) 41, 119, 381, 837, 899, 1316
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 4 cut(s) 80, 270, 660, 702
MspR9I CCNGG 5 cut(s) 80, 143, 538, 959, 1227
MvaI CCWGG 4 cut(s) 143, 538, 959, 1227
MvnI CGCG 1 cut(s) 951
MwoI GCNNNNNNNGC 3 cut(s) 602, 916, 1327
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 36
NdeII GATC 4 cut(s) 70, 246, 933, 1114
NheI GCTAGC 1 cut(s) 31
NlaIV GGNNCC 3 cut(s) 782, 920, 1198
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 6 cut(s) 13, 620, 824, 830, 863, 992
OliI CACNNNNGTG 2 cut(s) 119, 1316
PaeR7I CTCGAG 1 cut(s) 1072
PcsI WCGNNNNNNNCGW 1 cut(s) 873
PfeI GAWTC 3 cut(s) 167, 173, 1303
PflMI CCANNNNNTGG 3 cut(s) 190, 598, 724
PkrI GCNGC 1 cut(s) 770
PleI GAGTC 3 cut(s) 531, 1072, 1303
PpsI GAGTC 3 cut(s) 531, 1072, 1303
Psp1406I AACGTT 1 cut(s) 686
Psp6I CCWGG 4 cut(s) 141, 536, 957, 1225
PspGI CCWGG 4 cut(s) 141, 536, 957, 1225
PspN4I GGNNCC 3 cut(s) 782, 920, 1198
PspPI GGNCC 3 cut(s) 124, 139, 704
PspXI VCTCGAGB 1 cut(s) 1072
PsuI RGATCY 2 cut(s) 70, 246
RsaI GTAC 5 cut(s) 130, 147, 436, 468, 782
RsaNI GTAC 5 cut(s) 129, 146, 435, 467, 781
RseI CAYNNNNRTG 6 cut(s) 41, 119, 381, 837, 899, 1316
SalI GTCGAC 1 cut(s) 1053
SaqAI TTAA 3 cut(s) 588, 774, 1026
SatI GCNGC 1 cut(s) 769
Sau3AI GATC 4 cut(s) 70, 246, 933, 1114
Sau96I GGNCC 3 cut(s) 124, 139, 704
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 3 cut(s) 532, 1072, 1304
ScrFI CCNGG 5 cut(s) 80, 143, 538, 959, 1227
SduI GDGCHC 2 cut(s) 373, 921
SexAI ACCWGGT 1 cut(s) 141
SfaNI GCATC 3 cut(s) 268, 524, 755
Sfr274I CTCGAG 1 cut(s) 1072
SinI GGWCC 3 cut(s) 124, 139, 704
SlaI CTCGAG 1 cut(s) 1072
SmiMI CAYNNNNRTG 6 cut(s) 41, 119, 381, 837, 899, 1316
SmlI CTYRAG 1 cut(s) 1072
SmoI CTYRAG 1 cut(s) 1072
Sse9I AATT 5 cut(s) 262, 481, 585, 815, 886
SsiI CCGC 1 cut(s) 386
SspMI CTAG 3 cut(s) 32, 612, 1307
StyD4I CCNGG 5 cut(s) 78, 141, 536, 957, 1225
StyI CCWWGG 3 cut(s) 36, 943, 1048
TaaI ACNGT 6 cut(s) 206, 824, 830, 1059, 1164, 1273
TaiI ACGT 3 cut(s) 402, 689, 999
TaqI TCGA 3 cut(s) 849, 1054, 1073
TasI AATT 5 cut(s) 262, 481, 585, 815, 886
TatI WGTACW 1 cut(s) 434
TfiI GAWTC 3 cut(s) 167, 173, 1303
Tru1I TTAA 3 cut(s) 588, 774, 1026
Tru9I TTAA 3 cut(s) 588, 774, 1026
TscAI CASTG 7 cut(s) 301, 370, 729, 759, 943, 1167, 1318
TseFI GTSAC 6 cut(s) 13, 620, 824, 830, 863, 992
TseI GCWGC 1 cut(s) 768
Tsp45I GTSAC 6 cut(s) 13, 620, 824, 830, 863, 992
TspDTI ATGAA 4 cut(s) 844, 1196, 1223, 1273
TspGWI ACGGA 2 cut(s) 116, 1145
TspRI CASTG 7 cut(s) 301, 370, 729, 759, 943, 1167, 1318
Van91I CCANNNNNTGG 3 cut(s) 190, 598, 724
VpaK11BI GGWCC 3 cut(s) 124, 139, 704
XhoI CTCGAG 1 cut(s) 1072
XmiI GTMKAC 2 cut(s) 666, 1054
XspI CTAG 3 cut(s) 32, 612, 1307
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.