RchiOBHm_Chr1g0349581

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
42655248 .. 42657162
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57555

Sequence Viewer

Length: 1107 bp
ATGGACTGTGAAAGACTATATGATGAGAGTGTGCCGAGGCTCACTGAGTTGATCTCCGGTGAGCGTAATTATACCAGAGAAGATGCTCGGACATGGCTCAGTGGTGTGCTTGCCAACCATAGGAGTTGTTGGGATGGCTTGGAGGAGAAGGGTTTTCTTAAGAATGCTAGTGGTGCTCATCATTATAGGGCGGTGACACAAAACTTGACCATGGTGCTTGATGAGGCTCTTGCTTTGTATGGGAAGAGTACTATGACTACTGATGAGGCAATGAACGTATCACATGGACAAAACTCCAAACCCAGGCCAAATGGAGGGCTTTTAGCATCATGGAGTCCAGCAACATCCAGGGCTGACTTCGTGGTTGCAAAAGATGGTTCAGGCACTCACACAACACTTAACCAAGCCGTGGCTGCACTTGCTAGAATGGGTCACAGACGACCTCCAAGAGCCATAATCTATGTGAAATCCGGCGTCTACAATGAGAAGGTGGAAATTGGTGGACATATGAAGAATGTGATGCTTGTTGGGGATGGCATGGACAGAACTGTAATCACTGGTAGCCGCAGTGTCATGGACGGTGACAGCACTTTGACCTCAGCCACATTCGGTGTCTCCGGGGATGGTTTCTGGGCGAGGGACATAACGTTTGAGAATACGGCCGGTCCACAAAAGCACCAAGCAGTGGCATTGAGGGTCAGCTCTGACCTGGCAGTGTTTTACCGATGCAGCATTAAGGGGTACCAAGACACTCTCTACACCCATTCCCTAAGGCAATTCTACAGTGACTGTCACATATATGGCACAATTGATTTCATATTCGGTGACGCCCCCGTCGTGCTACAAAATTGTGACATTCTTGTGAGGAGGCCAATGGGGCACCAATCCAACATGATCACTGCCCAAGGACGCGACAACCCGGGAGAGAACACGGGCATTGTTATTCAAGGTTGTAGCGTTAGACCTGCGAGGGAGTTTGAGGGGGTTAAGGGTTCGTATAGGACTTACCTTGGTCGGCCGTGGCAGAGATACTCGAGGACTCTGTTCTTGAAGACAGATTTGGATGGTTTGGTTGATCCAAAGGGGTGGACGGAATGGAGAGGCTAG

Protein Analysis

368

Amino Acids

40.8

Weight (kDa)

8.16

Isoelectric Point (pI)

29.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 2 - 74 3.8e-09 Plant invertase/pectin methylesterase inhibitor
Pectinesterase PF01095 119 - 368 4.6e-111 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 833
Acc36I ACCTGC 1 cut(s) 973
Acc65I GGTACC 1 cut(s) 741
AccB1I GGYRCC 2 cut(s) 741, 879
AccB7I CCANNNNNTGG 2 cut(s) 409, 685
AccI GTMKAC 1 cut(s) 477
AccII CGCG 1 cut(s) 912
AciI CCGC 2 cut(s) 191, 565
AclI AACGTT 1 cut(s) 647
AclWI GGATC 1 cut(s) 1070
AcoI YGGCCR 2 cut(s) 660, 1016
AcyI GRCGYC 2 cut(s) 474, 828
AfaI GTAC 2 cut(s) 250, 743
AfiI CCNNNNNNNGG 5 cut(s) 120, 303, 314, 409, 685
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 947, 1051
AjnI CCWGG 3 cut(s) 302, 347, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
AluBI AGCT 1 cut(s) 702
AluI AGCT 1 cut(s) 702
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 1 cut(s) 1070
AlwNI CAGNNNCTG 1 cut(s) 789
Ama87I CYCGRG 2 cut(s) 919, 1033
AoxI GGCC 4 cut(s) 305, 660, 869, 1016
ApeKI GCWGC 2 cut(s) 413, 729
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
Asp718I GGTACC 1 cut(s) 741
AspS9I GGNCC 1 cut(s) 665
AsuC2I CCSGG 3 cut(s) 619, 920, 921
AsuHPI GGTGA 4 cut(s) 71, 205, 593, 836
AvaI CYCGRG 2 cut(s) 919, 1033
AvaII GGWCC 1 cut(s) 665
AxyI CCTNAGG 1 cut(s) 770
BaeGI GKGCMC 1 cut(s) 882
BanI GGYRCC 2 cut(s) 741, 879
BbsI GAAGAC 1 cut(s) 1058
Bbv12I GWGCWC 1 cut(s) 178
BbvCI CCTCAGC 1 cut(s) 598
BbvI GCAGC 2 cut(s) 400, 741
BccI CCATC 5 cut(s) 128, 368, 527, 617, 1058
BceAI ACGGC 3 cut(s) 392, 675, 1003
BciT130I CCWGG 3 cut(s) 304, 349, 710
BclI TGATCA 1 cut(s) 894
BcnI CCSGG 3 cut(s) 619, 920, 921
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 3 cut(s) 168, 423, 1105
BfmI CTRYAG 1 cut(s) 781
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 973
BglI GCCNNNNNGGC 1 cut(s) 877
BisI GCNGC 3 cut(s) 414, 565, 730
BlsI GCNGC 3 cut(s) 415, 566, 731
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 6 cut(s) 304, 349, 619, 710, 920, 921
Bme18I GGWCC 1 cut(s) 665
BmeT110I CYCGRG 2 cut(s) 919, 1033
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 2 cut(s) 743, 881
BmrFI CCNGG 6 cut(s) 304, 349, 619, 710, 920, 921
BmsI GCATC 4 cut(s) 73, 335, 510, 716
BpiI GAAGAC 1 cut(s) 1058
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu10I CCTNAGC 1 cut(s) 598
BpuMI CCSGG 3 cut(s) 619, 920, 921
BsaHI GRCGYC 2 cut(s) 474, 828
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 303, 314, 409, 685
Bse118I RCCGGY 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 562
Bse21I CCTNAGG 1 cut(s) 770
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 3 cut(s) 304, 349, 710
BseGI GGATG 5 cut(s) 139, 344, 538, 628, 1069
BseLI CCNNNNNNNGG 5 cut(s) 120, 303, 314, 409, 685
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 36, 112, 612
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 2 cut(s) 158, 880
BseSI GKGCMC 1 cut(s) 882
BseX3I CGGCCG 2 cut(s) 660, 1016
BseXI GCAGC 2 cut(s) 400, 741
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 912
Bsh1285I CGRYCG 2 cut(s) 663, 1019
BshFI GGCC 4 cut(s) 307, 662, 871, 1018
BshNI GGYRCC 2 cut(s) 741, 879
BsiEI CGRYCG 2 cut(s) 663, 1019
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 2 cut(s) 919, 1033
BsiSI CCGG 5 cut(s) 57, 471, 618, 663, 920
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 5 cut(s) 120, 303, 314, 409, 685
BsmAI GTCTC 1 cut(s) 619
BsmFI GGGAC 1 cut(s) 653
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 4 cut(s) 307, 662, 871, 1018
BsoBI CYCGRG 2 cut(s) 919, 1033
Bsp1286I GDGCHC 2 cut(s) 178, 882
Bsp143I GATC 3 cut(s) 51, 894, 1075
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 2 cut(s) 191, 565
BspANI GGCC 4 cut(s) 307, 662, 871, 1018
BspCNI CTCAG 3 cut(s) 37, 111, 611
BspFNI CGCG 1 cut(s) 912
BspLI GGNNCC 2 cut(s) 743, 881
BspMI ACCTGC 1 cut(s) 973
BspPI GGATC 1 cut(s) 1070
BspT107I GGYRCC 2 cut(s) 741, 879
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 662
BsrI ACTGG 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 662
BssMI GATC 3 cut(s) 51, 894, 1075
BssNI GRCGYC 2 cut(s) 474, 828
BssT1I CCWWGG 3 cut(s) 210, 904, 1009
Bst2UI CCWGG 3 cut(s) 304, 349, 710
Bst4CI ACNGT 5 cut(s) 8, 550, 581, 785, 791
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 2 cut(s) 474, 828
BstAFI CTTAAG 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 4 cut(s) 45, 98, 598, 770
BstDSI CCRYGG 3 cut(s) 210, 408, 1019
BstF5I GGATG 5 cut(s) 139, 344, 538, 628, 1069
BstFNI CGCG 1 cut(s) 912
BstKTI GATC 3 cut(s) 54, 897, 1078
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 3 cut(s) 51, 894, 1075
BstMCI CGRYCG 2 cut(s) 663, 1019
BstMWI GCNNNNNNNGC 4 cut(s) 173, 413, 419, 877
BstNI CCWGG 3 cut(s) 304, 349, 710
BstSCI CCNGG 6 cut(s) 302, 347, 617, 708, 918, 919
BstSFI CTRYAG 1 cut(s) 781
BstSLI GKGCMC 1 cut(s) 882
BstUI CGCG 1 cut(s) 912
BstV1I GCAGC 2 cut(s) 400, 741
BstV2I GAAGAC 1 cut(s) 1058
BstXI CCANNNNNNTGG 1 cut(s) 1086
BstZI CGGCCG 2 cut(s) 660, 1016
Bsu36I CCTNAGG 1 cut(s) 770
BsuRI GGCC 4 cut(s) 307, 662, 871, 1018
BtgI CCRYGG 3 cut(s) 210, 408, 1019
BtsCI GGATG 5 cut(s) 139, 344, 538, 628, 1069
BtsI GCAGTG 4 cut(s) 574, 690, 720, 897
BtsIMutI CAGTG 8 cut(s) 42, 106, 555, 574, 690, 720, 790, 897
BveI ACCTGC 1 cut(s) 973
Cac8I GCNNGC 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 789
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 1 cut(s) 665
Cfr9I CCCGGG 1 cut(s) 919
CseI GACGC 3 cut(s) 463, 836, 918
Csp6I GTAC 2 cut(s) 249, 742
CviAII CATG 7 cut(s) 93, 211, 284, 330, 538, 574, 892
CviQI GTAC 2 cut(s) 249, 742
DdeI CTNAG 4 cut(s) 45, 98, 598, 770
DpnI GATC 3 cut(s) 53, 896, 1077
DpnII GATC 3 cut(s) 51, 894, 1075
DrdI GACNNNNNNGTC 1 cut(s) 833
DseDI GACNNNNNNGTC 1 cut(s) 833
EaeI YGGCCR 2 cut(s) 660, 1016
EagI CGGCCG 2 cut(s) 660, 1016
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EclXI CGGCCG 2 cut(s) 660, 1016
Eco130I CCWWGG 3 cut(s) 210, 904, 1009
Eco47I GGWCC 1 cut(s) 665
Eco52I CGGCCG 2 cut(s) 660, 1016
Eco81I CCTNAGG 1 cut(s) 770
Eco88I CYCGRG 2 cut(s) 919, 1033
EcoRII CCWGG 3 cut(s) 302, 347, 708
EcoT14I CCWWGG 3 cut(s) 210, 904, 1009
ErhI CCWWGG 3 cut(s) 210, 904, 1009
FaeI CATG 7 cut(s) 96, 214, 287, 333, 541, 577, 895
FaqI GGGAC 1 cut(s) 653
FatI CATG 7 cut(s) 92, 210, 283, 329, 537, 573, 891
FauNDI CATATG 1 cut(s) 507
FbaI TGATCA 1 cut(s) 894
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 3 cut(s) 414, 565, 730
FokI GGATG 5 cut(s) 146, 331, 545, 635, 1076
Fsp4HI GCNGC 3 cut(s) 414, 565, 730
FspBI CTAG 3 cut(s) 168, 423, 1105
GluI GCNGC 3 cut(s) 414, 565, 730
HaeIII GGCC 4 cut(s) 307, 662, 871, 1018
HapII CCGG 5 cut(s) 57, 471, 618, 663, 920
HgaI GACGC 3 cut(s) 463, 836, 918
Hin1I GRCGYC 2 cut(s) 474, 828
Hin1II CATG 7 cut(s) 96, 214, 287, 333, 541, 577, 895
HinfI GANTC 2 cut(s) 334, 1039
HpaII CCGG 5 cut(s) 57, 471, 618, 663, 920
HphI GGTGA 4 cut(s) 71, 205, 593, 836
Hpy166II GTNNAC 4 cut(s) 478, 503, 668, 1089
Hpy188I TCNGA 2 cut(s) 90, 706
Hpy188III TCNNGA 1 cut(s) 1048
Hpy8I GTNNAC 4 cut(s) 478, 503, 668, 1089
Hpy99I CGWCG 1 cut(s) 839
HpyAV CCTTC 2 cut(s) 142, 481
HpyCH4III ACNGT 5 cut(s) 8, 550, 581, 785, 791
HpyCH4IV ACGT 2 cut(s) 276, 647
HpyCH4V TGCA 3 cut(s) 368, 416, 729
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 413, 419, 877
HpyF3I CTNAG 4 cut(s) 45, 98, 598, 770
HpySE526I ACGT 2 cut(s) 276, 647
Hsp92I GRCGYC 2 cut(s) 474, 828
Hsp92II CATG 7 cut(s) 96, 214, 287, 333, 541, 577, 895
KpnI GGTACC 1 cut(s) 745
Ksp22I TGATCA 1 cut(s) 894
Kzo9I GATC 3 cut(s) 51, 894, 1075
Lsp1109I GCAGC 2 cut(s) 400, 741
LweI GCATC 4 cut(s) 73, 335, 510, 716
MaeI CTAG 3 cut(s) 168, 423, 1105
MaeII ACGT 2 cut(s) 276, 647
MaeIII GTNAC 7 cut(s) 193, 431, 581, 785, 791, 824, 851
MalI GATC 3 cut(s) 53, 896, 1077
MboI GATC 3 cut(s) 51, 894, 1075
MboII GAAGA 4 cut(s) 92, 256, 523, 1063
MfeI CAATTG 1 cut(s) 807
MhlI GDGCHC 2 cut(s) 178, 882
MluCI AATT 5 cut(s) 67, 495, 776, 807, 847
MlyI GAGTC 2 cut(s) 343, 1033
MmeI TCCRAC 1 cut(s) 912
MseI TTAA 4 cut(s) 159, 399, 735, 987
MslI CAYNNNNRTG 2 cut(s) 798, 860
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 5 cut(s) 57, 471, 618, 663, 920
MspR9I CCNGG 6 cut(s) 304, 349, 619, 710, 920, 921
MunI CAATTG 1 cut(s) 807
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 3 cut(s) 304, 349, 710
MvnI CGCG 1 cut(s) 912
MwoI GCNNNNNNNGC 4 cut(s) 173, 413, 419, 877
NciI CCSGG 3 cut(s) 619, 920, 921
NcoI CCATGG 1 cut(s) 210
NdeI CATATG 1 cut(s) 507
NdeII GATC 3 cut(s) 51, 894, 1075
NlaIII CATG 7 cut(s) 96, 214, 287, 333, 541, 577, 895
NlaIV GGNNCC 2 cut(s) 743, 881
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 7 cut(s) 193, 431, 581, 785, 791, 824, 851
PaeR7I CTCGAG 1 cut(s) 1033
PcsI WCGNNNNNNNCGW 1 cut(s) 834
PctI GAATGC 1 cut(s) 169
PflMI CCANNNNNTGG 2 cut(s) 409, 685
PkrI GCNGC 3 cut(s) 415, 566, 731
PleI GAGTC 2 cut(s) 342, 1033
PpsI GAGTC 2 cut(s) 342, 1033
Psp1406I AACGTT 1 cut(s) 647
Psp6I CCWGG 3 cut(s) 302, 347, 708
PspGI CCWGG 3 cut(s) 302, 347, 708
PspN4I GGNNCC 2 cut(s) 743, 881
PspPI GGNCC 1 cut(s) 665
PspXI VCTCGAGB 1 cut(s) 1033
PstNI CAGNNNCTG 1 cut(s) 789
RsaI GTAC 2 cut(s) 250, 743
RsaNI GTAC 2 cut(s) 249, 742
RseI CAYNNNNRTG 2 cut(s) 798, 860
SaqAI TTAA 4 cut(s) 159, 399, 735, 987
SatI GCNGC 3 cut(s) 414, 565, 730
Sau3AI GATC 3 cut(s) 51, 894, 1075
Sau96I GGNCC 1 cut(s) 665
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 2 cut(s) 343, 1033
ScrFI CCNGG 6 cut(s) 304, 349, 619, 710, 920, 921
SduI GDGCHC 2 cut(s) 178, 882
SfaNI GCATC 4 cut(s) 73, 335, 510, 716
SfcI CTRYAG 1 cut(s) 781
Sfr274I CTCGAG 1 cut(s) 1033
SinI GGWCC 1 cut(s) 665
SlaI CTCGAG 1 cut(s) 1033
SmaI CCCGGG 1 cut(s) 921
SmiMI CAYNNNNRTG 2 cut(s) 798, 860
SmlI CTYRAG 2 cut(s) 158, 1033
SmoI CTYRAG 2 cut(s) 158, 1033
Sse9I AATT 5 cut(s) 67, 495, 776, 807, 847
SsiI CCGC 2 cut(s) 191, 565
SspMI CTAG 3 cut(s) 168, 423, 1105
StyD4I CCNGG 6 cut(s) 302, 347, 617, 708, 918, 919
StyI CCWWGG 3 cut(s) 210, 904, 1009
TaaI ACNGT 5 cut(s) 8, 550, 581, 785, 791
TaiI ACGT 2 cut(s) 279, 650
TaqI TCGA 1 cut(s) 1034
TasI AATT 5 cut(s) 67, 495, 776, 807, 847
TatI WGTACW 1 cut(s) 248
TauI GCSGC 1 cut(s) 567
Tru1I TTAA 4 cut(s) 159, 399, 735, 987
Tru9I TTAA 4 cut(s) 159, 399, 735, 987
TscAI CASTG 8 cut(s) 49, 106, 562, 574, 690, 720, 790, 904
TseFI GTSAC 7 cut(s) 193, 431, 581, 785, 791, 824, 851
TseI GCWGC 2 cut(s) 413, 729
Tsp45I GTSAC 7 cut(s) 193, 431, 581, 785, 791, 824, 851
TspDTI ATGAA 3 cut(s) 287, 524, 805
TspGWI ACGGA 1 cut(s) 1106
TspMI CCCGGG 1 cut(s) 919
TspRI CASTG 8 cut(s) 49, 106, 562, 574, 690, 720, 790, 904
Van91I CCANNNNNTGG 2 cut(s) 409, 685
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 665
XhoI CTCGAG 1 cut(s) 1033
XmaI CCCGGG 1 cut(s) 919
XmiI GTMKAC 1 cut(s) 477
XspI CTAG 3 cut(s) 168, 423, 1105
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.