Pectinesterase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G60730 |
| fragaria_vesca | FvH4_7g11333 FvH4_7g11340 FvH4_7g11360 |
| malus_domestica | MD07G1118200.v1.1 |
| prunus_persica | Prupe.2G141200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0349551 RchiOBHm_Chr1g0349581 |
| rosa_laevigata | RLG00000028540 RLG00000028543 |
| rosa_multiflora | Rmu_sc0002495.1_g000023 Rmu_sc0006074.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00305450 |
| rosa_rugosa | Rorug01G0204500 |
| rosa_samantha | Rh1AG221800 Rh1AG222000 Rh1BG187900 Rh1BG188200 Rh1CG206600 Rh1CG206900 Rh1DG217300 Rh1DG217500 |
| rosa_wichuraiana | Rw0G014800 Rw1G018850 Rw1G018900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 833 |
| Acc36I | ACCTGC | 1 cut(s) | 973 |
| Acc65I | GGTACC | 1 cut(s) | 741 |
| AccB1I | GGYRCC | 2 cut(s) | 741, 879 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 409, 685 |
| AccI | GTMKAC | 1 cut(s) | 477 |
| AccII | CGCG | 1 cut(s) | 912 |
| AciI | CCGC | 2 cut(s) | 191, 565 |
| AclI | AACGTT | 1 cut(s) | 647 |
| AclWI | GGATC | 1 cut(s) | 1070 |
| AcoI | YGGCCR | 2 cut(s) | 660, 1016 |
| AcyI | GRCGYC | 2 cut(s) | 474, 828 |
| AfaI | GTAC | 2 cut(s) | 250, 743 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 120, 303, 314, 409, 685 |
| AflII | CTTAAG | 1 cut(s) | 158 |
| AgsI | TTSAA | 2 cut(s) | 947, 1051 |
| AjnI | CCWGG | 3 cut(s) | 302, 347, 708 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1043, 1075 |
| AluBI | AGCT | 1 cut(s) | 702 |
| AluI | AGCT | 1 cut(s) | 702 |
| Alw21I | GWGCWC | 1 cut(s) | 178 |
| Alw26I | GTCTC | 1 cut(s) | 619 |
| AlwI | GGATC | 1 cut(s) | 1070 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 789 |
| Ama87I | CYCGRG | 2 cut(s) | 919, 1033 |
| AoxI | GGCC | 4 cut(s) | 305, 660, 869, 1016 |
| ApeKI | GCWGC | 2 cut(s) | 413, 729 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 632, 664 |
| Asp718I | GGTACC | 1 cut(s) | 741 |
| AspS9I | GGNCC | 1 cut(s) | 665 |
| AsuC2I | CCSGG | 3 cut(s) | 619, 920, 921 |
| AsuHPI | GGTGA | 4 cut(s) | 71, 205, 593, 836 |
| AvaI | CYCGRG | 2 cut(s) | 919, 1033 |
| AvaII | GGWCC | 1 cut(s) | 665 |
| AxyI | CCTNAGG | 1 cut(s) | 770 |
| BaeGI | GKGCMC | 1 cut(s) | 882 |
| BanI | GGYRCC | 2 cut(s) | 741, 879 |
| BbsI | GAAGAC | 1 cut(s) | 1058 |
| Bbv12I | GWGCWC | 1 cut(s) | 178 |
| BbvCI | CCTCAGC | 1 cut(s) | 598 |
| BbvI | GCAGC | 2 cut(s) | 400, 741 |
| BccI | CCATC | 5 cut(s) | 128, 368, 527, 617, 1058 |
| BceAI | ACGGC | 3 cut(s) | 392, 675, 1003 |
| BciT130I | CCWGG | 3 cut(s) | 304, 349, 710 |
| BclI | TGATCA | 1 cut(s) | 894 |
| BcnI | CCSGG | 3 cut(s) | 619, 920, 921 |
| BcoDI | GTCTC | 1 cut(s) | 619 |
| BfaI | CTAG | 3 cut(s) | 168, 423, 1105 |
| BfmI | CTRYAG | 1 cut(s) | 781 |
| BfrI | CTTAAG | 1 cut(s) | 158 |
| BfuAI | ACCTGC | 1 cut(s) | 973 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 877 |
| BisI | GCNGC | 3 cut(s) | 414, 565, 730 |
| BlsI | GCNGC | 3 cut(s) | 415, 566, 731 |
| BmcAI | AGTACT | 1 cut(s) | 250 |
| Bme1390I | CCNGG | 6 cut(s) | 304, 349, 619, 710, 920, 921 |
| Bme18I | GGWCC | 1 cut(s) | 665 |
| BmeT110I | CYCGRG | 2 cut(s) | 919, 1033 |
| BmgT120I | GGNCC | 1 cut(s) | 665 |
| BmiI | GGNNCC | 2 cut(s) | 743, 881 |
| BmrFI | CCNGG | 6 cut(s) | 304, 349, 619, 710, 920, 921 |
| BmsI | GCATC | 4 cut(s) | 73, 335, 510, 716 |
| BpiI | GAAGAC | 1 cut(s) | 1058 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 38, 70 |
| Bpu10I | CCTNAGC | 1 cut(s) | 598 |
| BpuMI | CCSGG | 3 cut(s) | 619, 920, 921 |
| BsaHI | GRCGYC | 2 cut(s) | 474, 828 |
| BsaWI | WCCGGW | 1 cut(s) | 56 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 120, 303, 314, 409, 685 |
| Bse118I | RCCGGY | 1 cut(s) | 662 |
| Bse1I | ACTGG | 1 cut(s) | 562 |
| Bse21I | CCTNAGG | 1 cut(s) | 770 |
| Bse3DI | GCAATG | 1 cut(s) | 276 |
| BseBI | CCWGG | 3 cut(s) | 304, 349, 710 |
| BseGI | GGATG | 5 cut(s) | 139, 344, 538, 628, 1069 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 120, 303, 314, 409, 685 |
| BseMI | GCAATG | 1 cut(s) | 276 |
| BseMII | CTCAG | 3 cut(s) | 36, 112, 612 |
| BseNI | ACTGG | 1 cut(s) | 562 |
| BseRI | GAGGAG | 2 cut(s) | 158, 880 |
| BseSI | GKGCMC | 1 cut(s) | 882 |
| BseX3I | CGGCCG | 2 cut(s) | 660, 1016 |
| BseXI | GCAGC | 2 cut(s) | 400, 741 |
| BsgI | GTGCAG | 1 cut(s) | 399 |
| Bsh1236I | CGCG | 1 cut(s) | 912 |
| Bsh1285I | CGRYCG | 2 cut(s) | 663, 1019 |
| BshFI | GGCC | 4 cut(s) | 307, 662, 871, 1018 |
| BshNI | GGYRCC | 2 cut(s) | 741, 879 |
| BsiEI | CGRYCG | 2 cut(s) | 663, 1019 |
| BsiHKAI | GWGCWC | 1 cut(s) | 178 |
| BsiHKCI | CYCGRG | 2 cut(s) | 919, 1033 |
| BsiSI | CCGG | 5 cut(s) | 57, 471, 618, 663, 920 |
| BslFI | GGGAC | 1 cut(s) | 653 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 120, 303, 314, 409, 685 |
| BsmAI | GTCTC | 1 cut(s) | 619 |
| BsmFI | GGGAC | 1 cut(s) | 653 |
| BsmI | GAATGC | 1 cut(s) | 169 |
| BsnI | GGCC | 4 cut(s) | 307, 662, 871, 1018 |
| BsoBI | CYCGRG | 2 cut(s) | 919, 1033 |
| Bsp1286I | GDGCHC | 2 cut(s) | 178, 882 |
| Bsp143I | GATC | 3 cut(s) | 51, 894, 1075 |
| Bsp19I | CCATGG | 1 cut(s) | 210 |
| BspACI | CCGC | 2 cut(s) | 191, 565 |
| BspANI | GGCC | 4 cut(s) | 307, 662, 871, 1018 |
| BspCNI | CTCAG | 3 cut(s) | 37, 111, 611 |
| BspFNI | CGCG | 1 cut(s) | 912 |
| BspLI | GGNNCC | 2 cut(s) | 743, 881 |
| BspMI | ACCTGC | 1 cut(s) | 973 |
| BspPI | GGATC | 1 cut(s) | 1070 |
| BspT107I | GGYRCC | 2 cut(s) | 741, 879 |
| BspTI | CTTAAG | 1 cut(s) | 158 |
| BsrDI | GCAATG | 1 cut(s) | 276 |
| BsrFI | RCCGGY | 1 cut(s) | 662 |
| BsrI | ACTGG | 1 cut(s) | 562 |
| BssAI | RCCGGY | 1 cut(s) | 662 |
| BssMI | GATC | 3 cut(s) | 51, 894, 1075 |
| BssNI | GRCGYC | 2 cut(s) | 474, 828 |
| BssT1I | CCWWGG | 3 cut(s) | 210, 904, 1009 |
| Bst2UI | CCWGG | 3 cut(s) | 304, 349, 710 |
| Bst4CI | ACNGT | 5 cut(s) | 8, 550, 581, 785, 791 |
| Bst6I | CTCTTC | 1 cut(s) | 239 |
| BstACI | GRCGYC | 2 cut(s) | 474, 828 |
| BstAFI | CTTAAG | 1 cut(s) | 158 |
| BstC8I | GCNNGC | 1 cut(s) | 111 |
| BstDEI | CTNAG | 4 cut(s) | 45, 98, 598, 770 |
| BstDSI | CCRYGG | 3 cut(s) | 210, 408, 1019 |
| BstF5I | GGATG | 5 cut(s) | 139, 344, 538, 628, 1069 |
| BstFNI | CGCG | 1 cut(s) | 912 |
| BstKTI | GATC | 3 cut(s) | 54, 897, 1078 |
| BstMAI | GTCTC | 1 cut(s) | 619 |
| BstMBI | GATC | 3 cut(s) | 51, 894, 1075 |
| BstMCI | CGRYCG | 2 cut(s) | 663, 1019 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 173, 413, 419, 877 |
| BstNI | CCWGG | 3 cut(s) | 304, 349, 710 |
| BstSCI | CCNGG | 6 cut(s) | 302, 347, 617, 708, 918, 919 |
| BstSFI | CTRYAG | 1 cut(s) | 781 |
| BstSLI | GKGCMC | 1 cut(s) | 882 |
| BstUI | CGCG | 1 cut(s) | 912 |
| BstV1I | GCAGC | 2 cut(s) | 400, 741 |
| BstV2I | GAAGAC | 1 cut(s) | 1058 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1086 |
| BstZI | CGGCCG | 2 cut(s) | 660, 1016 |
| Bsu36I | CCTNAGG | 1 cut(s) | 770 |
| BsuRI | GGCC | 4 cut(s) | 307, 662, 871, 1018 |
| BtgI | CCRYGG | 3 cut(s) | 210, 408, 1019 |
| BtsCI | GGATG | 5 cut(s) | 139, 344, 538, 628, 1069 |
| BtsI | GCAGTG | 4 cut(s) | 574, 690, 720, 897 |
| BtsIMutI | CAGTG | 8 cut(s) | 42, 106, 555, 574, 690, 720, 790, 897 |
| BveI | ACCTGC | 1 cut(s) | 973 |
| Cac8I | GCNNGC | 1 cut(s) | 111 |
| CaiI | CAGNNNCTG | 1 cut(s) | 789 |
| Cfr10I | RCCGGY | 1 cut(s) | 662 |
| Cfr13I | GGNCC | 1 cut(s) | 665 |
| Cfr9I | CCCGGG | 1 cut(s) | 919 |
| CseI | GACGC | 3 cut(s) | 463, 836, 918 |
| Csp6I | GTAC | 2 cut(s) | 249, 742 |
| CviAII | CATG | 7 cut(s) | 93, 211, 284, 330, 538, 574, 892 |
| CviQI | GTAC | 2 cut(s) | 249, 742 |
| DdeI | CTNAG | 4 cut(s) | 45, 98, 598, 770 |
| DpnI | GATC | 3 cut(s) | 53, 896, 1077 |
| DpnII | GATC | 3 cut(s) | 51, 894, 1075 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 833 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 833 |
| EaeI | YGGCCR | 2 cut(s) | 660, 1016 |
| EagI | CGGCCG | 2 cut(s) | 660, 1016 |
| Eam1104I | CTCTTC | 1 cut(s) | 239 |
| EarI | CTCTTC | 1 cut(s) | 239 |
| EclXI | CGGCCG | 2 cut(s) | 660, 1016 |
| Eco130I | CCWWGG | 3 cut(s) | 210, 904, 1009 |
| Eco47I | GGWCC | 1 cut(s) | 665 |
| Eco52I | CGGCCG | 2 cut(s) | 660, 1016 |
| Eco81I | CCTNAGG | 1 cut(s) | 770 |
| Eco88I | CYCGRG | 2 cut(s) | 919, 1033 |
| EcoRII | CCWGG | 3 cut(s) | 302, 347, 708 |
| EcoT14I | CCWWGG | 3 cut(s) | 210, 904, 1009 |
| ErhI | CCWWGG | 3 cut(s) | 210, 904, 1009 |
| FaeI | CATG | 7 cut(s) | 96, 214, 287, 333, 541, 577, 895 |
| FaqI | GGGAC | 1 cut(s) | 653 |
| FatI | CATG | 7 cut(s) | 92, 210, 283, 329, 537, 573, 891 |
| FauNDI | CATATG | 1 cut(s) | 507 |
| FbaI | TGATCA | 1 cut(s) | 894 |
| FblI | GTMKAC | 1 cut(s) | 477 |
| Fnu4HI | GCNGC | 3 cut(s) | 414, 565, 730 |
| FokI | GGATG | 5 cut(s) | 146, 331, 545, 635, 1076 |
| Fsp4HI | GCNGC | 3 cut(s) | 414, 565, 730 |
| FspBI | CTAG | 3 cut(s) | 168, 423, 1105 |
| GluI | GCNGC | 3 cut(s) | 414, 565, 730 |
| HaeIII | GGCC | 4 cut(s) | 307, 662, 871, 1018 |
| HapII | CCGG | 5 cut(s) | 57, 471, 618, 663, 920 |
| HgaI | GACGC | 3 cut(s) | 463, 836, 918 |
| Hin1I | GRCGYC | 2 cut(s) | 474, 828 |
| Hin1II | CATG | 7 cut(s) | 96, 214, 287, 333, 541, 577, 895 |
| HinfI | GANTC | 2 cut(s) | 334, 1039 |
| HpaII | CCGG | 5 cut(s) | 57, 471, 618, 663, 920 |
| HphI | GGTGA | 4 cut(s) | 71, 205, 593, 836 |
| Hpy166II | GTNNAC | 4 cut(s) | 478, 503, 668, 1089 |
| Hpy188I | TCNGA | 2 cut(s) | 90, 706 |
| Hpy188III | TCNNGA | 1 cut(s) | 1048 |
| Hpy8I | GTNNAC | 4 cut(s) | 478, 503, 668, 1089 |
| Hpy99I | CGWCG | 1 cut(s) | 839 |
| HpyAV | CCTTC | 2 cut(s) | 142, 481 |
| HpyCH4III | ACNGT | 5 cut(s) | 8, 550, 581, 785, 791 |
| HpyCH4IV | ACGT | 2 cut(s) | 276, 647 |
| HpyCH4V | TGCA | 3 cut(s) | 368, 416, 729 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 173, 413, 419, 877 |
| HpyF3I | CTNAG | 4 cut(s) | 45, 98, 598, 770 |
| HpySE526I | ACGT | 2 cut(s) | 276, 647 |
| Hsp92I | GRCGYC | 2 cut(s) | 474, 828 |
| Hsp92II | CATG | 7 cut(s) | 96, 214, 287, 333, 541, 577, 895 |
| KpnI | GGTACC | 1 cut(s) | 745 |
| Ksp22I | TGATCA | 1 cut(s) | 894 |
| Kzo9I | GATC | 3 cut(s) | 51, 894, 1075 |
| Lsp1109I | GCAGC | 2 cut(s) | 400, 741 |
| LweI | GCATC | 4 cut(s) | 73, 335, 510, 716 |
| MaeI | CTAG | 3 cut(s) | 168, 423, 1105 |
| MaeII | ACGT | 2 cut(s) | 276, 647 |
| MaeIII | GTNAC | 7 cut(s) | 193, 431, 581, 785, 791, 824, 851 |
| MalI | GATC | 3 cut(s) | 53, 896, 1077 |
| MboI | GATC | 3 cut(s) | 51, 894, 1075 |
| MboII | GAAGA | 4 cut(s) | 92, 256, 523, 1063 |
| MfeI | CAATTG | 1 cut(s) | 807 |
| MhlI | GDGCHC | 2 cut(s) | 178, 882 |
| MluCI | AATT | 5 cut(s) | 67, 495, 776, 807, 847 |
| MlyI | GAGTC | 2 cut(s) | 343, 1033 |
| MmeI | TCCRAC | 1 cut(s) | 912 |
| MseI | TTAA | 4 cut(s) | 159, 399, 735, 987 |
| MslI | CAYNNNNRTG | 2 cut(s) | 798, 860 |
| MspCI | CTTAAG | 1 cut(s) | 158 |
| MspI | CCGG | 5 cut(s) | 57, 471, 618, 663, 920 |
| MspR9I | CCNGG | 6 cut(s) | 304, 349, 619, 710, 920, 921 |
| MunI | CAATTG | 1 cut(s) | 807 |
| Mva1269I | GAATGC | 1 cut(s) | 169 |
| MvaI | CCWGG | 3 cut(s) | 304, 349, 710 |
| MvnI | CGCG | 1 cut(s) | 912 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 173, 413, 419, 877 |
| NciI | CCSGG | 3 cut(s) | 619, 920, 921 |
| NcoI | CCATGG | 1 cut(s) | 210 |
| NdeI | CATATG | 1 cut(s) | 507 |
| NdeII | GATC | 3 cut(s) | 51, 894, 1075 |
| NlaIII | CATG | 7 cut(s) | 96, 214, 287, 333, 541, 577, 895 |
| NlaIV | GGNNCC | 2 cut(s) | 743, 881 |
| NmeAIII | GCCGAG | 1 cut(s) | 60 |
| NmuCI | GTSAC | 7 cut(s) | 193, 431, 581, 785, 791, 824, 851 |
| PaeR7I | CTCGAG | 1 cut(s) | 1033 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 834 |
| PctI | GAATGC | 1 cut(s) | 169 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 409, 685 |
| PkrI | GCNGC | 3 cut(s) | 415, 566, 731 |
| PleI | GAGTC | 2 cut(s) | 342, 1033 |
| PpsI | GAGTC | 2 cut(s) | 342, 1033 |
| Psp1406I | AACGTT | 1 cut(s) | 647 |
| Psp6I | CCWGG | 3 cut(s) | 302, 347, 708 |
| PspGI | CCWGG | 3 cut(s) | 302, 347, 708 |
| PspN4I | GGNNCC | 2 cut(s) | 743, 881 |
| PspPI | GGNCC | 1 cut(s) | 665 |
| PspXI | VCTCGAGB | 1 cut(s) | 1033 |
| PstNI | CAGNNNCTG | 1 cut(s) | 789 |
| RsaI | GTAC | 2 cut(s) | 250, 743 |
| RsaNI | GTAC | 2 cut(s) | 249, 742 |
| RseI | CAYNNNNRTG | 2 cut(s) | 798, 860 |
| SaqAI | TTAA | 4 cut(s) | 159, 399, 735, 987 |
| SatI | GCNGC | 3 cut(s) | 414, 565, 730 |
| Sau3AI | GATC | 3 cut(s) | 51, 894, 1075 |
| Sau96I | GGNCC | 1 cut(s) | 665 |
| ScaI | AGTACT | 1 cut(s) | 250 |
| SchI | GAGTC | 2 cut(s) | 343, 1033 |
| ScrFI | CCNGG | 6 cut(s) | 304, 349, 619, 710, 920, 921 |
| SduI | GDGCHC | 2 cut(s) | 178, 882 |
| SfaNI | GCATC | 4 cut(s) | 73, 335, 510, 716 |
| SfcI | CTRYAG | 1 cut(s) | 781 |
| Sfr274I | CTCGAG | 1 cut(s) | 1033 |
| SinI | GGWCC | 1 cut(s) | 665 |
| SlaI | CTCGAG | 1 cut(s) | 1033 |
| SmaI | CCCGGG | 1 cut(s) | 921 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 798, 860 |
| SmlI | CTYRAG | 2 cut(s) | 158, 1033 |
| SmoI | CTYRAG | 2 cut(s) | 158, 1033 |
| Sse9I | AATT | 5 cut(s) | 67, 495, 776, 807, 847 |
| SsiI | CCGC | 2 cut(s) | 191, 565 |
| SspMI | CTAG | 3 cut(s) | 168, 423, 1105 |
| StyD4I | CCNGG | 6 cut(s) | 302, 347, 617, 708, 918, 919 |
| StyI | CCWWGG | 3 cut(s) | 210, 904, 1009 |
| TaaI | ACNGT | 5 cut(s) | 8, 550, 581, 785, 791 |
| TaiI | ACGT | 2 cut(s) | 279, 650 |
| TaqI | TCGA | 1 cut(s) | 1034 |
| TasI | AATT | 5 cut(s) | 67, 495, 776, 807, 847 |
| TatI | WGTACW | 1 cut(s) | 248 |
| TauI | GCSGC | 1 cut(s) | 567 |
| Tru1I | TTAA | 4 cut(s) | 159, 399, 735, 987 |
| Tru9I | TTAA | 4 cut(s) | 159, 399, 735, 987 |
| TscAI | CASTG | 8 cut(s) | 49, 106, 562, 574, 690, 720, 790, 904 |
| TseFI | GTSAC | 7 cut(s) | 193, 431, 581, 785, 791, 824, 851 |
| TseI | GCWGC | 2 cut(s) | 413, 729 |
| Tsp45I | GTSAC | 7 cut(s) | 193, 431, 581, 785, 791, 824, 851 |
| TspDTI | ATGAA | 3 cut(s) | 287, 524, 805 |
| TspGWI | ACGGA | 1 cut(s) | 1106 |
| TspMI | CCCGGG | 1 cut(s) | 919 |
| TspRI | CASTG | 8 cut(s) | 49, 106, 562, 574, 690, 720, 790, 904 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 409, 685 |
| Vha464I | CTTAAG | 1 cut(s) | 158 |
| VpaK11BI | GGWCC | 1 cut(s) | 665 |
| XhoI | CTCGAG | 1 cut(s) | 1033 |
| XmaI | CCCGGG | 1 cut(s) | 919 |
| XmiI | GTMKAC | 1 cut(s) | 477 |
| XspI | CTAG | 3 cut(s) | 168, 423, 1105 |
| ZrmI | AGTACT | 1 cut(s) | 250 |