Prupe.2G141200_v2.0.a1

Pectinesterase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
19754635 .. 19757309
2675 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G141200.1

Sequence Viewer

Length: 1479 bp
ATGTCCACTTCTGTAGTCATCACCACCTTCTTCCTCTTATTAGCCATGGCTGCCTCCACCTTCTGCCTCCAACAGCCAAACCCAATTCAGGTTGCCCTAGATAGGGTTCTTCAAGCCACAAATTGGGTCCAGAGTTCAATTAAATTACATGAATTGGGCAGCGATGATACTTCAAATGATGGTGGTGTGGCTCTGAGAGACTGTGCTCAACTATATGATGAGAGTGCGGCTAGGCTCATGGTGTTACTGTCCAACAATGAGAGTTATAGTGGTGATGACGCACGAACATGGCTCAGTGGGTTGCTTGCCAACCAGAGGACTTGTTTGGATGGCTTGGATGAGAAGGGTTTCAATAAGACTGATGAGCATCGTGTGGTGGCAGAAAACTTGACTATGGTGCTTGGTGAAGCTCTTGCTTTCTATGGGAAGGGTATGCATGAGGGTAGGAGAGTACCACCAAGGGAACAAGAACCCAAGCCCAAACAAAATGAAGGTCTTTTAGTATCATGGAGTCTAGGAACATCCAGGGCTGATTTTGTGGTGGCAAAAGATGGTTCAGGAACACATAGAACAATCAATGAGGCTGTAGCTGCACTTGTTCGCATGGGTCACAGGCGACCCCCAAGAGTCATAATCTATGTGAAACCCGGTGTGTATCAAGAGAAGGTGGAGCTTCATAGAAATATAGTAAATGTAATGCTTGTTGGTGCTGGCATTGACAAAACTATCATCACCGGTAGTCACAGCTATCGCGGAGGTTTAACAACTCGAAACTCAGCTACATTCGGTGTATCAGGGGATGGATTTTGGGCAAGGGACATAACATTTGAGAACACGGCAGGTCCCGAAATGCACCAGGCAGTGGCACTGAGGGTGAGCTCAGACATCACAGTGTTCTACCGATGCAGCATCAAAGGGTACCAAGACACACTTTATGTCCACGCGAATAGGCAATTTTATCGCGACTGTCAAATATACGGCACGATTGATTTCATATTCGGTAACGCCATTGCGGTGTTACAAAATTGTGACATTTTTGTGAGGAGGCCAATGAACTCCCAATCGAACATGATCACCGCGCAAGGCCGCGACAAGGAATCGGAGACCACAGGGATTGTAATCCATGGTTGTCGCGTTAGACCTGCACCAGAGTTTGCAAGGGTCAAGGGCTCATTTAGGAGCTATTTGGGCAGGCCATGGAAGAGGTTTTCAAGGACTGTGTTTATGAAAACTGACCTGGATGGCTTGATTGATCCAAAGGGGTGGACAGAATGGAGGGGCAGCTATGGACTTTCAACATTGTTCTATGGGGAGTACATGAATACAGGGACTGGGGCATCAACTGAACAGAGGGTTAAGTGGCCGGGATTTCATGTGCTCAATAGTCCTCAGGAGGCTAGCCCTTTCACAGTTAATAAATTCATTCAGGGACAGTTTTGGCTTCCAGCCACTGGTGTGCCATTCTGGCCTGGAATATAA

Protein Analysis

493

Amino Acids

54.79

Weight (kDa)

8.72

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 830, 1150
Acc65I GGTACC 1 cut(s) 918
AccB1I GGYRCC 1 cut(s) 918
AccB7I CCANNNNNTGG 3 cut(s) 123, 862, 1451
AccII CGCG 6 cut(s) 753, 944, 963, 1079, 1089, 1134
AciI CCGC 5 cut(s) 227, 753, 1013, 1077, 1087
AclWI GGATC 1 cut(s) 1247
AcoI YGGCCR 1 cut(s) 1361
AcsI RAATTY 1 cut(s) 1418
AfaI GTAC 3 cut(s) 453, 920, 1316
AfiI CCNNNNNNNGG 8 cut(s) 88, 102, 103, 123, 315, 862, 1093, 1451
AgeI ACCGGT 1 cut(s) 734
AgsI TTSAA 6 cut(s) 113, 138, 174, 352, 1212, 1296
AjnI CCWGG 4 cut(s) 524, 855, 1236, 1468
AleI CACNNNNGTG 1 cut(s) 1454
AluBI AGCT 8 cut(s) 410, 590, 673, 747, 779, 879, 1182, 1284
AluI AGCT 8 cut(s) 410, 590, 673, 747, 779, 879, 1182, 1284
Alw21I GWGCWC 3 cut(s) 208, 881, 1380
Alw26I GTCTC 2 cut(s) 192, 1097
AlwI GGATC 1 cut(s) 1247
AlwNI CAGNNNCTG 2 cut(s) 1331, 1451
AoxI GGCC 5 cut(s) 1046, 1084, 1193, 1361, 1466
ApeKI GCWGC 5 cut(s) 50, 159, 590, 906, 1281
ApoI RAATTY 1 cut(s) 1418
ArsI GACNNNNNNTTYG 4 cut(s) 478, 510, 809, 841
AsiGI ACCGGT 1 cut(s) 734
Asp700I GAANNNNTTC 1 cut(s) 347
Asp718I GGTACC 1 cut(s) 918
AspLEI GCGC 1 cut(s) 1081
AspS9I GGNCC 2 cut(s) 127, 842
AsuC2I CCSGG 2 cut(s) 648, 1365
AsuHPI GGTGA 6 cut(s) 13, 284, 416, 724, 886, 1066
AsuNHI GCTAGC 1 cut(s) 1397
AvaII GGWCC 2 cut(s) 127, 842
AxyI CCTNAGG 1 cut(s) 1389
BanI GGYRCC 1 cut(s) 918
BanII GRGCYC 2 cut(s) 881, 1172
Bbv12I GWGCWC 3 cut(s) 208, 881, 1380
BbvI GCAGC 5 cut(s) 37, 171, 577, 918, 1293
BccI CCATC 5 cut(s) 173, 323, 545, 794, 1235
BceAI ACGGC 2 cut(s) 852, 994
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 4 cut(s) 526, 857, 1238, 1470
BclI TGATCA 1 cut(s) 1071
BcnI CCSGG 2 cut(s) 648, 1365
BcoDI GTCTC 2 cut(s) 192, 1097
BfaI CTAG 4 cut(s) 98, 231, 515, 1398
BfmI CTRYAG 2 cut(s) 12, 585
BfuAI ACCTGC 2 cut(s) 830, 1150
BglI GCCNNNNNGGC 1 cut(s) 1465
BisI GCNGC 7 cut(s) 51, 160, 228, 591, 907, 1087, 1282
BlsI GCNGC 7 cut(s) 52, 161, 229, 592, 908, 1088, 1283
Bme1390I CCNGG 6 cut(s) 526, 648, 857, 1238, 1365, 1470
Bme18I GGWCC 2 cut(s) 127, 842
BmgT120I GGNCC 2 cut(s) 127, 842
BmiI GGNNCC 3 cut(s) 128, 844, 920
BmrFI CCNGG 6 cut(s) 526, 648, 857, 1238, 1365, 1470
BmrI ACTGGG 1 cut(s) 1341
BmsI GCATC 4 cut(s) 376, 893, 918, 1346
BmtI GCTAGC 1 cut(s) 1401
BmuI ACTGGG 1 cut(s) 1341
BpuMI CCSGG 2 cut(s) 648, 1365
BsaBI GATNNNNATC 2 cut(s) 366, 1118
BsaI GGTCTC 1 cut(s) 1097
BsaJI CCNNGG 5 cut(s) 45, 458, 525, 1123, 1196
BsaWI WCCGGW 1 cut(s) 734
Bsc4I CCNNNNNNNGG 8 cut(s) 88, 102, 103, 123, 315, 862, 1093, 1451
Bse118I RCCGGY 1 cut(s) 734
Bse1I ACTGG 2 cut(s) 1336, 1456
Bse21I CCTNAGG 1 cut(s) 1389
Bse3DI GCAATG 1 cut(s) 1008
Bse8I GATNNNNATC 2 cut(s) 366, 1118
BseBI CCWGG 4 cut(s) 526, 857, 1238, 1470
BseDI CCNNGG 5 cut(s) 45, 458, 525, 1123, 1196
BseGI GGATG 5 cut(s) 334, 343, 521, 805, 1246
BseJI GATNNNNATC 2 cut(s) 366, 1118
BseLI CCNNNNNNNGG 8 cut(s) 88, 102, 103, 123, 315, 862, 1093, 1451
BseMI GCAATG 1 cut(s) 1008
BseMII CTCAG 6 cut(s) 185, 307, 789, 860, 894, 1403
BseNI ACTGG 2 cut(s) 1336, 1456
BseRI GAGGAG 1 cut(s) 1057
BseXI GCAGC 5 cut(s) 37, 171, 577, 918, 1293
BsgI GTGCAG 2 cut(s) 576, 1128
Bsh1236I CGCG 6 cut(s) 753, 944, 963, 1079, 1089, 1134
BshFI GGCC 5 cut(s) 1048, 1086, 1195, 1363, 1468
BshNI GGYRCC 1 cut(s) 918
BshTI ACCGGT 1 cut(s) 734
BsiHKAI GWGCWC 3 cut(s) 208, 881, 1380
BsiSI CCGG 3 cut(s) 648, 735, 1364
BslFI GGGAC 4 cut(s) 828, 830, 1342, 1443
BslI CCNNNNNNNGG 8 cut(s) 88, 102, 103, 123, 315, 862, 1093, 1451
BsmAI GTCTC 2 cut(s) 192, 1097
BsmFI GGGAC 4 cut(s) 828, 830, 1342, 1443
BsnI GGCC 5 cut(s) 1048, 1086, 1195, 1363, 1468
Bso31I GGTCTC 1 cut(s) 1097
Bsp1286I GDGCHC 4 cut(s) 208, 881, 1172, 1380
Bsp143I GATC 2 cut(s) 1071, 1252
Bsp19I CCATGG 3 cut(s) 45, 1123, 1196
Bsp68I TCGCGA 1 cut(s) 963
BspACI CCGC 5 cut(s) 227, 753, 1013, 1077, 1087
BspANI GGCC 5 cut(s) 1048, 1086, 1195, 1363, 1468
BspCNI CTCAG 6 cut(s) 186, 306, 788, 861, 893, 1402
BspFNI CGCG 6 cut(s) 753, 944, 963, 1079, 1089, 1134
BspLI GGNNCC 3 cut(s) 128, 844, 920
BspMI ACCTGC 2 cut(s) 830, 1150
BspOI GCTAGC 1 cut(s) 1401
BspPI GGATC 1 cut(s) 1247
BspT107I GGYRCC 1 cut(s) 918
BspTNI GGTCTC 1 cut(s) 1097
BsrDI GCAATG 1 cut(s) 1008
BsrFI RCCGGY 1 cut(s) 734
BsrI ACTGG 2 cut(s) 1336, 1456
BssAI RCCGGY 1 cut(s) 734
BssECI CCNNGG 5 cut(s) 45, 458, 525, 1123, 1196
BssMI GATC 2 cut(s) 1071, 1252
BssT1I CCWWGG 4 cut(s) 45, 458, 1123, 1196
Bst2UI CCWGG 4 cut(s) 526, 857, 1238, 1470
Bst4CI ACNGT 7 cut(s) 203, 249, 892, 968, 1219, 1411, 1434
Bst6I CTCTTC 1 cut(s) 1196
BstC8I GCNNGC 4 cut(s) 306, 712, 1193, 1399
BstDEI CTNAG 6 cut(s) 194, 293, 775, 869, 880, 1389
BstDSI CCRYGG 3 cut(s) 45, 1123, 1196
BstF5I GGATG 5 cut(s) 334, 343, 521, 805, 1246
BstFNI CGCG 6 cut(s) 753, 944, 963, 1079, 1089, 1134
BstHHI GCGC 1 cut(s) 1081
BstKTI GATC 2 cut(s) 1074, 1255
BstMAI GTCTC 2 cut(s) 192, 1097
BstMBI GATC 2 cut(s) 1071, 1252
BstMWI GCNNNNNNNGC 4 cut(s) 50, 590, 1188, 1465
BstNI CCWGG 4 cut(s) 526, 857, 1238, 1470
BstSCI CCNGG 6 cut(s) 524, 646, 855, 1236, 1363, 1468
BstSFI CTRYAG 2 cut(s) 12, 585
BstUI CGCG 6 cut(s) 753, 944, 963, 1079, 1089, 1134
BstV1I GCAGC 5 cut(s) 37, 171, 577, 918, 1293
BstXI CCANNNNNNTGG 1 cut(s) 1263
Bsu36I CCTNAGG 1 cut(s) 1389
BsuRI GGCC 5 cut(s) 1048, 1086, 1195, 1363, 1468
BtgI CCRYGG 3 cut(s) 45, 1123, 1196
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 5 cut(s) 334, 343, 521, 805, 1246
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 5 cut(s) 301, 866, 867, 897, 1449
BtuMI TCGCGA 1 cut(s) 963
BveI ACCTGC 2 cut(s) 830, 1150
Cac8I GCNNGC 4 cut(s) 306, 712, 1193, 1399
CaiI CAGNNNCTG 2 cut(s) 1331, 1451
CfoI GCGC 1 cut(s) 1081
Cfr10I RCCGGY 1 cut(s) 734
Cfr13I GGNCC 2 cut(s) 127, 842
CseI GACGC 1 cut(s) 287
Csp6I GTAC 3 cut(s) 452, 919, 1315
CspAI ACCGGT 1 cut(s) 734
CspCI CAANNNNNGTGG 2 cut(s) 1096, 1131
CviQI GTAC 3 cut(s) 452, 919, 1315
DdeI CTNAG 6 cut(s) 194, 293, 775, 869, 880, 1389
DpnI GATC 2 cut(s) 1073, 1254
DpnII GATC 2 cut(s) 1071, 1252
EaeI YGGCCR 1 cut(s) 1361
Eam1104I CTCTTC 1 cut(s) 1196
EarI CTCTTC 1 cut(s) 1196
Ecl136II GAGCTC 1 cut(s) 879
Eco130I CCWWGG 4 cut(s) 45, 458, 1123, 1196
Eco24I GRGCYC 2 cut(s) 881, 1172
Eco31I GGTCTC 1 cut(s) 1097
Eco47I GGWCC 2 cut(s) 127, 842
Eco53kI GAGCTC 1 cut(s) 879
Eco81I CCTNAGG 1 cut(s) 1389
EcoICRI GAGCTC 1 cut(s) 879
EcoO109I RGGNCCY 1 cut(s) 842
EcoRII CCWGG 4 cut(s) 524, 855, 1236, 1468
EcoT14I CCWWGG 4 cut(s) 45, 458, 1123, 1196
EcoT22I ATGCAT 1 cut(s) 438
EcoT38I GRGCYC 2 cut(s) 881, 1172
ErhI CCWWGG 4 cut(s) 45, 458, 1123, 1196
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FaqI GGGAC 4 cut(s) 828, 830, 1342, 1443
FbaI TGATCA 1 cut(s) 1071
Fnu4HI GCNGC 7 cut(s) 51, 160, 228, 591, 907, 1087, 1282
FokI GGATG 5 cut(s) 341, 350, 508, 812, 1253
FriOI GRGCYC 2 cut(s) 881, 1172
Fsp4HI GCNGC 7 cut(s) 51, 160, 228, 591, 907, 1087, 1282
FspBI CTAG 4 cut(s) 98, 231, 515, 1398
GlaI GCGC 1 cut(s) 1080
GluI GCNGC 7 cut(s) 51, 160, 228, 591, 907, 1087, 1282
HaeIII GGCC 5 cut(s) 1048, 1086, 1195, 1363, 1468
HapII CCGG 3 cut(s) 648, 735, 1364
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 1081
Hin6I GCGC 1 cut(s) 1079
HinP1I GCGC 1 cut(s) 1079
HinfI GANTC 3 cut(s) 511, 627, 1097
HpaII CCGG 3 cut(s) 648, 735, 1364
HphI GGTGA 6 cut(s) 13, 284, 416, 724, 886, 1066
Hpy166II GTNNAC 3 cut(s) 6, 940, 1266
Hpy188I TCNGA 3 cut(s) 195, 883, 1102
Hpy188III TCNNGA 6 cut(s) 130, 558, 659, 845, 962, 1391
Hpy8I GTNNAC 3 cut(s) 6, 940, 1266
HpyAV CCTTC 6 cut(s) 37, 70, 337, 421, 485, 658
HpyCH4III ACNGT 7 cut(s) 203, 249, 892, 968, 1219, 1411, 1434
HpyCH4V TGCA 6 cut(s) 436, 593, 853, 906, 1145, 1157
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 590, 1188, 1465
HpyF3I CTNAG 6 cut(s) 194, 293, 775, 869, 880, 1389
HspAI GCGC 1 cut(s) 1079
KpnI GGTACC 1 cut(s) 922
Ksp22I TGATCA 1 cut(s) 1071
Kzo9I GATC 2 cut(s) 1071, 1252
LmnI GCTCC 2 cut(s) 670, 1179
Lsp1109I GCAGC 5 cut(s) 37, 171, 577, 918, 1293
LweI GCATC 4 cut(s) 376, 893, 918, 1346
MaeI CTAG 4 cut(s) 98, 231, 515, 1398
MaeIII GTNAC 6 cut(s) 243, 608, 740, 1001, 1017, 1028
MalI GATC 2 cut(s) 1073, 1254
MboI GATC 2 cut(s) 1071, 1252
MboII GAAGA 3 cut(s) 22, 101, 1213
MhlI GDGCHC 4 cut(s) 208, 881, 1172, 1380
MluCI AATT 8 cut(s) 84, 121, 138, 143, 152, 953, 1024, 1418
MlyI GAGTC 2 cut(s) 520, 636
MmeI TCCRAC 2 cut(s) 94, 276
Mph1103I ATGCAT 1 cut(s) 438
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 4 cut(s) 141, 761, 1356, 1413
MslI CAYNNNNRTG 5 cut(s) 286, 890, 1013, 1037, 1454
MspI CCGG 3 cut(s) 648, 735, 1364
MspR9I CCNGG 6 cut(s) 526, 648, 857, 1238, 1365, 1470
MvaI CCWGG 4 cut(s) 526, 857, 1238, 1470
MvnI CGCG 6 cut(s) 753, 944, 963, 1079, 1089, 1134
MwoI GCNNNNNNNGC 4 cut(s) 50, 590, 1188, 1465
NciI CCSGG 2 cut(s) 648, 1365
NcoI CCATGG 3 cut(s) 45, 1123, 1196
NdeII GATC 2 cut(s) 1071, 1252
NheI GCTAGC 1 cut(s) 1397
NlaIV GGNNCC 3 cut(s) 128, 844, 920
NmuCI GTSAC 3 cut(s) 608, 740, 1028
NruI TCGCGA 1 cut(s) 963
NsiI ATGCAT 1 cut(s) 438
OliI CACNNNNGTG 1 cut(s) 1454
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 1 cut(s) 1097
PflMI CCANNNNNTGG 3 cut(s) 123, 862, 1451
PinAI ACCGGT 1 cut(s) 734
PkrI GCNGC 7 cut(s) 52, 161, 229, 592, 908, 1088, 1283
PleI GAGTC 2 cut(s) 519, 635
PpsI GAGTC 2 cut(s) 519, 635
PpuMI RGGWCCY 1 cut(s) 842
Psp124BI GAGCTC 1 cut(s) 881
Psp5II RGGWCCY 1 cut(s) 842
Psp6I CCWGG 4 cut(s) 524, 855, 1236, 1468
PspGI CCWGG 4 cut(s) 524, 855, 1236, 1468
PspN4I GGNNCC 3 cut(s) 128, 844, 920
PspPI GGNCC 2 cut(s) 127, 842
PspPPI RGGWCCY 1 cut(s) 842
PstNI CAGNNNCTG 2 cut(s) 1331, 1451
RruI TCGCGA 1 cut(s) 963
RsaI GTAC 3 cut(s) 453, 920, 1316
RsaNI GTAC 3 cut(s) 452, 919, 1315
RseI CAYNNNNRTG 5 cut(s) 286, 890, 1013, 1037, 1454
SacI GAGCTC 1 cut(s) 881
SaqAI TTAA 4 cut(s) 141, 761, 1356, 1413
SatI GCNGC 7 cut(s) 51, 160, 228, 591, 907, 1087, 1282
Sau3AI GATC 2 cut(s) 1071, 1252
Sau96I GGNCC 2 cut(s) 127, 842
SchI GAGTC 2 cut(s) 520, 636
ScrFI CCNGG 6 cut(s) 526, 648, 857, 1238, 1365, 1470
SduI GDGCHC 4 cut(s) 208, 881, 1172, 1380
SfaNI GCATC 4 cut(s) 376, 893, 918, 1346
SfcI CTRYAG 2 cut(s) 12, 585
SinI GGWCC 2 cut(s) 127, 842
SmiMI CAYNNNNRTG 5 cut(s) 286, 890, 1013, 1037, 1454
Sse9I AATT 8 cut(s) 84, 121, 138, 143, 152, 953, 1024, 1418
SsiI CCGC 5 cut(s) 227, 753, 1013, 1077, 1087
SspMI CTAG 4 cut(s) 98, 231, 515, 1398
SstI GAGCTC 1 cut(s) 881
StyD4I CCNGG 6 cut(s) 524, 646, 855, 1236, 1363, 1468
StyI CCWWGG 4 cut(s) 45, 458, 1123, 1196
TaaI ACNGT 7 cut(s) 203, 249, 892, 968, 1219, 1411, 1434
TaqI TCGA 2 cut(s) 769, 1064
TasI AATT 8 cut(s) 84, 121, 138, 143, 152, 953, 1024, 1418
TatI WGTACW 1 cut(s) 1314
TauI GCSGC 2 cut(s) 230, 1089
TfiI GAWTC 1 cut(s) 1097
Tru1I TTAA 4 cut(s) 141, 761, 1356, 1413
Tru9I TTAA 4 cut(s) 141, 761, 1356, 1413
TscAI CASTG 5 cut(s) 301, 867, 873, 897, 1456
TseFI GTSAC 3 cut(s) 608, 740, 1028
TseI GCWGC 5 cut(s) 50, 159, 590, 906, 1281
Tsp45I GTSAC 3 cut(s) 608, 740, 1028
TspDTI ATGAA 9 cut(s) 165, 504, 665, 982, 1067, 1241, 1334, 1361, 1411
TspRI CASTG 5 cut(s) 301, 867, 873, 897, 1456
Van91I CCANNNNNTGG 3 cut(s) 123, 862, 1451
VpaK11BI GGWCC 2 cut(s) 127, 842
XapI RAATTY 1 cut(s) 1418
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 4 cut(s) 98, 231, 515, 1398
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.